Lag0021664 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021664
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 10448205 .. 10452676 (+)
RNA-Seq Expression	Lag0021664
Synteny	Lag0021664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGACCACCTCAGCATGGATTACCACCTAAGCACTAGACTTAAGTAAGTGCAAGTAATTGGTAGCTATTAAGCAAGCCTATTGATTAAATAGTTAGTCTGTTAGAATTGTTATTAGTTACAACTAATTCTTGTTTTTCTCTACTGTGAAATTTAGTCGTAACTTTAATTTAGTTGTAACTTGAATTATTCTGTATTCATAGATTGCTCTTATATAAGGCATCTGTTTTGATCACTAATAATATGCAAGATTCATTTGTGATCATTGATCTGAGTTCTTAGATTTTCTTGATTAAGAACTTCATCAGTAGCCCAACCCAGGTGAGATCGAGAAATTAGAGTGAATAGGTCAGTAATTCGACCTAGGTGAAAGCAGATGCGTGTTAACCTAACCTAGTTGAGATTAGGTGCTTAGAGCTTGTCATAGGCAAGATCAAGTAACTATCAGCTCATCTTAAGCTTTTTGGTTTAGGCATAGGGTTGAAAGACTGAAAGACCTGACATGCCTCATCCAACACCTTGTCGCAAACTAGATATCAGACTTAAGAATGTGTACTTAGTAGTGTGTTGTCATGCCCTGTATTGACCTATCTACAATGGCACCTCAACCACCAACCAACTGGTCTACAAACATCCTAGCAAGTCACAATAAAAGTTATTCCTAGCAAGTCACAATAAAAGTTATGGCTTTGCCACCGTATTAAGCTGAACTGAGTTGCATCCATCAAAATTGTGACTTGTGTCCATGCCTAGTGTGACTATAGTACTATACTAGTATTCTATGACTAGAGGTAATCATTATGCAAGTTTCTCTTATATATATGAGGATGGTTGGCAAGCACCACACTAGTGTTAAGTGTCACAATCGCAAACTTTCAAACTCGGGACGGGCGATTGTGCGGCACTTGTCCTAACCCGGCGGGCAAGTCAGCCGTACAAAAATCGCAAATCGCGGACAACTTCGGCGTAGGGTTTAGCCTCCACTCACGTTTTAGGAGAAAATTGGTTTTATAAAACGTGAGAGAGAAAAAGCATTGAAAACATCTTTAAAAGAGAGCATTGAATACAAGGGTGCAAGGAAGCTTGATTGCAAGAAAGTATACAATGCTTGGTAGGGGGTGGTTTGATGACTACTTGGTCCCCCTATAGTATGAGGCATTTTTAGTCTGGCAGGCGTGAACATGCGACATCGCGAGGAGTCATACGCCCACAAAACTCATTACAACAGAAAGTAAATAACAAAACTAATTACATGGTACTAAAACATGATGGGTGAGGATGGTTTGGACATGCGGCCATAGGCACAACTCGCCCTGGACAAGCATGCTCATGGCTTTGCCACCGTATTAAGCTGAACTGAGTTGCATCCATCAAAATTGTGACTTGTGTCCATGCCTAGTGTGACTATAGTACTATACTAGTATTCTATGACTAGAGGTAATCATTATGCAAGTTTCTCTTATATATATGAGGATGGTTGGCAAGCACCACACTAGTGTTAAGCGCCGCCTAGCCTTTACAAGTAAACTCTAGCATACTCATTTGTCATCTTTATATTCCGTTTTTCCATCTCTAATCATTTATTTCTGGGATGATATTTGGTTATGTGATTCTTCTTTTAAGTTGTGTTTTCCTCGATTATTTGCTATCTCTACATCTTCGAATGGTTTGGTGGCTGGTTTGTGGGATTCTCAGCATTTATCATGGAATATTGTCTTTAGGAGGCTGCTTAAGGATGATGAAATTCCAGCTTTGCAATCGTTGTTGGGTGTTCTTTCTTCCTTGAAGGTTGGCTCTCGTGCTGATTCAAGAATATGGTCGTTGGAACCCTCTGGTTTATTCACAGTAAAATCGTTATCAAGAAAATTAGCAGCTTCTTCTCTGTTGCAAAAGGACTTATTTCGAGCTGTATGGAAATCAAAAGGTCCTAAGAATAATCTTATCGGCATAACCTTGAATTTTCATTGGCTTTGAAGCATCACTTATTATGCGGTTAAAGCTTTCTCCTGGAACTATGGATGGAAAGTAATTTGAGAATTTTTTAGTACAAGCATCTTCCTTGGTGAATCTCCAAGAATGAAAACTTTCCTAATGGTGTTCCCTTTCTAAGTATTTTGTAAGTTTTTTTTTTTTTTTTTTTGTTAGATATTAATCTGAATTGGGATGCAAGTTGTTTCTGTTTTATTTCATCCCTTGTGGGGCTTGTATTCTTTTGAGCGTTAGTCTCTTTTCATTTCTTTTAAAATAACCACCGTGAAATGCACATAATTTCTATCAGCTTTCTAAACAAAATCATGAAACTATCATCTTGTAGTACTACACACTTTGCTAGCTTGTGGAGTTGCTGGCTATTGGTTAAGCATCAATTCTCTCTGTTTTTTCGTTTTTGGTTGGGTGGCGGTTGGAACGAACAAAGTTGAAGAGTTGGATTTCACCCATTCTTGCAATATCCATTGCTCATTGTAGAGTTTGTTAATTAGTAGCATATTCTCCCACAAATACAACAGGTTTTTATCTTTAAAATCTTTTATCAATATCAGTAGCATATTAGATAAACTTCTCTTTCCGATTTTAAATATTTATGACTACTATAGCTAAATTCAAGTTCTATATCTTTGTGCTAATTAATTAGTGCACTTCTAAAGTCTACATGAGTTCTTTTTTCCCCTGCACTAAAAGTCCTATTTTATCTGCTATTTGGCAAACATATTTCAGGCGCACCAATTCTCCAATGGAAAAGCAAAGGACCAGTTTGAAGTATAAAGAAAGTTCTTTTTTCTCCTTACACTAATGTAAGTTTCTTTTTAATATTTTATTTTACAAGGCTACTTTTATAGCTTGGATGTTCAAGCAGACTCGCACCAAAATGAAAAAAAAATGGTTTATGGTTATATTAATTCCCTGCCTCATTCTCAAGTTTGTTTATGTAATTCTTAATCTACTTTCTCTTCATTCTTTCTTCTTTCTTCTTACTTCTAACTAGTGAACAAAAAATCATAGTAACTTGCATGTTTGCAATATATCATAAGAAAATCTTTATACTTCTTTAGAAGAATAAATGGTACTCTTAGAAGTACACACCCAACTTTGATCCAAGAATTAGTTTGACATTCATTAAAAAATTACATGTGGAAATAGTGTTTATAAGTTTAATTTTCAAAAAACAAAAACCAAAAACCAAATGGTTATCAATCGGGACATAATTAATTGCATTTGACATTTTGATTGTAGGTGTTCATCTACCCCAAGATAGATATTGTACCGTATTTATTTATTGTCCAAGGAGCCGTGGGTCACATTTTGTAATACTAACGATATTCTCTGAATTTACAAGTGAACAAAACTTCCCTACATACCCCATTAAAATCTTGACAACTAAGAAAGAGGAAGGGAGAACATTTTTATTTTTTTTTAATTATTATTTGAGTTCCCTACGACTACATGTACCAGCTTATTCATCGATGAAACTTTTGTTTTAGATTAGATATCTTTTTTTTTCTTGTCAAATTCAATAAAGAACAATTTCATTATAGACTTGTATATTGTTTCCATAATTTGTAAGTGAAGATGAGCCTGCTAGAGGTAGAGATGCAAATACTGACCATGATGTAATTTACATGTATACCATCTTAAAATGACAAAAAAGAAATTACGGAAGAAGTGCAAAAATAAAAATAAAACTACCCTTTATCGTGATAATATAGTTCCATTAATTGTAACTATTTCTCAAAAAATAATAATAATAATAATAATAATAAATAAAATAAAATAAAATAAAATAAAATAAAAAGTTATGTAATTTCTTTAAATTTTTAAGTTGTTACAATCGTAATCTCAAATTTCTACATTTATTACAGTTAAACACATCAGTTTAATTATAACGATTTTACTACTTCAAAAGTGATAACACATTGAAATTTGAGAATGCATTGTGATTGTAAGAAATAACTCTATAACCAGTAGTTTTTTAAAAATATATATATATAAATCTGACATACTTTCTCCATTTAATTTTTCAACGTTTCATTCTCTTTGTTGATAAATTATTTCTATGTTCATAGGTCTATTAAATGATTGCTTCACAATAATGCTAACTACATATAGGATTCTAGCCTTCTAGGAAAGCATATTTCTACTAAAATACAAATTTTACACCAATGAAGTATACAGTTACAAATTATAATCTCATTGGCTCTTAAGAGTTAAATGGTGGCGGGTAACGAACACACCTAAGCTTAGGAATCCAAACATCTATTTAAGATGTGAAATTTTATTGCATAAACAGCTAGAATCCAGCCACCTGATACAGTTGCGAACAAAGCTGCACTTCAACGGTTGAGGTCTCATCAGATCGCCCAAGCTGTTGTCCTAGAAGAAGCACAAATAGAAGACAAACATGTTATACATACACTTGGTTCTTGGACTCCAGACTTGTGGTATGCAGAATTTAAAGCACCAGCAGACTTTTAA

mRNA sequence

ATGTCAGACCACCTCAGCATGGATTACCACCTAAGCACTAGACTTAAGAGGCTGCTTAAGGATGATGAAATTCCAGCTTTGCAATCGTTGTTGGGTGTTCTTTCTTCCTTGAAGGTTGGCTCTCGTGCTGATTCAAGAATATGGTCGTTGGAACCCTCTGGTTTATTCACAGTAAAATCGTTATCAAGAAAATTAGCAGCTTCTTCTCTGTTGCAAAAGGACTTATTTCGAGCTGTATGGAAATCAAAAGCTAGAATCCAGCCACCTGATACAGTTGCGAACAAAGCTGCACTTCAACGGTTGAGGTCTCATCAGATCGCCCAAGCTGTTGTCCTAGAAGAAGCACAAATAGAAGACAAACATGTTATACATACACTTGGTTCTTGGACTCCAGACTTGTGGTATGCAGAATTTAAAGCACCAGCAGACTTTTAA

Coding sequence (CDS)

ATGTCAGACCACCTCAGCATGGATTACCACCTAAGCACTAGACTTAAGAGGCTGCTTAAGGATGATGAAATTCCAGCTTTGCAATCGTTGTTGGGTGTTCTTTCTTCCTTGAAGGTTGGCTCTCGTGCTGATTCAAGAATATGGTCGTTGGAACCCTCTGGTTTATTCACAGTAAAATCGTTATCAAGAAAATTAGCAGCTTCTTCTCTGTTGCAAAAGGACTTATTTCGAGCTGTATGGAAATCAAAAGCTAGAATCCAGCCACCTGATACAGTTGCGAACAAAGCTGCACTTCAACGGTTGAGGTCTCATCAGATCGCCCAAGCTGTTGTCCTAGAAGAAGCACAAATAGAAGACAAACATGTTATACATACACTTGGTTCTTGGACTCCAGACTTGTGGTATGCAGAATTTAAAGCACCAGCAGACTTTTAA

Protein sequence

MSDHLSMDYHLSTRLKRLLKDDEIPALQSLLGVLSSLKVGSRADSRIWSLEPSGLFTVKSLSRKLAASSLLQKDLFRAVWKSKARIQPPDTVANKAALQRLRSHQIAQAVVLEEAQIEDKHVIHTLGSWTPDLWYAEFKAPADF

Homology

[Close]

BLAST of Lag0021664 vs. NCBI nr
Match: XP_022155195.1 (uncharacterized protein LOC111022333 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 3   DHLSMDYHLSTRLKRLLKDDEIPALQSLLGVLSSLKVGSRADSRIWSLEPSGLFTVKSLS 62
           D  ++ + +STR  R LKDDEI     LL +L S    +  D R+WSLEPSG+F+V S+S
Sbjct: 70  DAQTLSWRISTR--RALKDDEIEEFSVLLYLLHSHSPSNELDRRLWSLEPSGMFSVASIS 129

Query: 63  RKLAASSLLQKDLFRAVWKSKA 85
            KL ++S L K LF+A+WKSK+
Sbjct: 130 -KLCSASSLPKALFKAIWKSKS 148

[Close]

BLAST of Lag0021664 vs. NCBI nr
Match: XP_038878804.1 (uncharacterized protein LOC120070945 isoform X8 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-06
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10   HLSTRLKRLLKDDEIPALQSLLGVLSSLKVGSRADSRIWSLEPSGLFTVKSLSRKLAASS 69
            H     ++LLK D I   Q LLGVL+ +KV    +S  WSL+    F+VKSL + L ASS
Sbjct: 1344 HWDEVFRKLLKVDGIIDFQQLLGVLARIKVNDNLNSCSWSLDSLEKFSVKSLGKHLEASS 1403

Query: 70   LLQKDLFRAVWKSKA 85
            L+ K++F A+W+S+A
Sbjct: 1404 LICKEVFSALWQSRA 1418

[Close]

BLAST of Lag0021664 vs. NCBI nr
Match: XP_038878803.1 (uncharacterized protein LOC120070945 isoform X7 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-06
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10   HLSTRLKRLLKDDEIPALQSLLGVLSSLKVGSRADSRIWSLEPSGLFTVKSLSRKLAASS 69
            H     ++LLK D I   Q LLGVL+ +KV    +S  WSL+    F+VKSL + L ASS
Sbjct: 1344 HWDEVFRKLLKVDGIIDFQQLLGVLARIKVNDNLNSCSWSLDSLEKFSVKSLGKHLEASS 1403

Query: 70   LLQKDLFRAVWKSKA 85
            L+ K++F A+W+S+A
Sbjct: 1404 LICKEVFSALWQSRA 1418

[Close]

BLAST of Lag0021664 vs. NCBI nr
Match: XP_038878806.1 (DDT domain-containing protein PTM isoform X9 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-06
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10   HLSTRLKRLLKDDEIPALQSLLGVLSSLKVGSRADSRIWSLEPSGLFTVKSLSRKLAASS 69
            H     ++LLK D I   Q LLGVL+ +KV    +S  WSL+    F+VKSL + L ASS
Sbjct: 1344 HWDEVFRKLLKVDGIIDFQQLLGVLARIKVNDNLNSCSWSLDSLEKFSVKSLGKHLEASS 1403

Query: 70   LLQKDLFRAVWKSKA 85
            L+ K++F A+W+S+A
Sbjct: 1404 LICKEVFSALWQSRA 1418

[Close]

BLAST of Lag0021664 vs. NCBI nr
Match: TYK22579.1 (hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 16  KRLLKDDEIPALQSLLGVLSSLKVGSRADSRIWSLEPSGLFTVKSLSRKLAASSLLQKDL 75
           +RLLKD+EI   QSLL +LSS ++    D RIWSL+  G ++VKSLS  L+ S  L+K  
Sbjct: 108 RRLLKDEEIQDFQSLL-LLSSRRMAELEDGRIWSLDALGHYSVKSLSTHLSPSCPLEKAC 167

Query: 76  FRAVWKSKA 85
           ++A+WK+ +
Sbjct: 168 YKALWKTSS 175

The following BLAST results are available for this feature:

BLAST of Lag0021664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155195.1	1.8e-08	48.78	uncharacterized protein LOC111022333 [Momordica charantia]	[more]
XP_038878804.1	6.3e-06	45.33	uncharacterized protein LOC120070945 isoform X8 [Benincasa hispida]	[more]
XP_038878803.1	6.3e-06	45.33	uncharacterized protein LOC120070945 isoform X7 [Benincasa hispida]	[more]
XP_038878806.1	6.3e-06	45.33	DDT domain-containing protein PTM isoform X9 [Benincasa hispida]	[more]
TYK22579.1	1.4e-05	47.83	hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0021664 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021664.1	Lag0021664.1	mRNA