Lag0021600 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021600
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	B-block_TFIIIC domain-containing protein
Location	chr7: 9660583 .. 9661005 (-)
RNA-Seq Expression	Lag0021600
Synteny	Lag0021600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCACCGTCTCCTCCGCCGTCGAAGAAATTTGCTCACAGGGTCTAAACGGACTCGCTCTCCGCAATCTATGGCCCAGGCTCGAACCGTCTCTCTCAGCTTCCGGCCTCGACCTCTCCAATGGTGTCAAGACCGCCGTCTGGACCCAACTCCTTCGCGTCCCATCCCTGCAATTCGAAACTGGCAAGGTGACCTATGATGCTAAGGACCCATCTATTCAGTCATTCGAAGATGCTGAAAGGTTGAATTTGAAGGTTGTGGCCAAAGAGCATCTTAGGGATAATTTTGTAGGGCTCTACAATGTGCGATCAGCCAGTTCCAACATGTCCGCCCATCAAAGACGTGTCCTTGAGCGACTCGCGATTGCTAGGTACGCTACGAGTAGGCTTGCTGTGTCTTATTCTGCAGTGTGCATTTGA

mRNA sequence

ATGGACGCCACCGTCTCCTCCGCCGTCGAAGAAATTTGCTCACAGGGTCTAAACGGACTCGCTCTCCGCAATCTATGGCCCAGGCTCGAACCGTCTCTCTCAGCTTCCGGCCTCGACCTCTCCAATGGTGTCAAGACCGCCGTCTGGACCCAACTCCTTCGCGTCCCATCCCTGCAATTCGAAACTGGCAAGGTGACCTATGATGCTAAGGACCCATCTATTCAGTCATTCGAAGATGCTGAAAGGTTGAATTTGAAGGTTGTGGCCAAAGAGCATCTTAGGGATAATTTTGTAGGGCTCTACAATGTGCGATCAGCCAGTTCCAACATGTCCGCCCATCAAAGACGTGTCCTTGAGCGACTCGCGATTGCTAGGTACGCTACGAGTAGGCTTGCTGTGTCTTATTCTGCAGTGTGCATTTGA

Coding sequence (CDS)

ATGGACGCCACCGTCTCCTCCGCCGTCGAAGAAATTTGCTCACAGGGTCTAAACGGACTCGCTCTCCGCAATCTATGGCCCAGGCTCGAACCGTCTCTCTCAGCTTCCGGCCTCGACCTCTCCAATGGTGTCAAGACCGCCGTCTGGACCCAACTCCTTCGCGTCCCATCCCTGCAATTCGAAACTGGCAAGGTGACCTATGATGCTAAGGACCCATCTATTCAGTCATTCGAAGATGCTGAAAGGTTGAATTTGAAGGTTGTGGCCAAAGAGCATCTTAGGGATAATTTTGTAGGGCTCTACAATGTGCGATCAGCCAGTTCCAACATGTCCGCCCATCAAAGACGTGTCCTTGAGCGACTCGCGATTGCTAGGTACGCTACGAGTAGGCTTGCTGTGTCTTATTCTGCAGTGTGCATTTGA

Protein sequence

MDATVSSAVEEICSQGLNGLALRNLWPRLEPSLSASGLDLSNGVKTAVWTQLLRVPSLQFETGKVTYDAKDPSIQSFEDAERLNLKVVAKEHLRDNFVGLYNVRSASSNMSAHQRRVLERLAIARYATSRLAVSYSAVCI

Homology

[Close]

BLAST of Lag0021600 vs. NCBI nr
Match: XP_038903712.1 (uncharacterized protein LOC120090216 isoform X1 [Benincasa hispida] >XP_038903717.1 uncharacterized protein LOC120090216 isoform X1 [Benincasa hispida] >XP_038903723.1 uncharacterized protein LOC120090216 isoform X1 [Benincasa hispida] >XP_038903732.1 uncharacterized protein LOC120090216 isoform X1 [Benincasa hispida])

HSP 1 Score: 220.7 bits (561), Expect = 7.9e-54
Identity = 114/125 (91.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MDATVSSAVEEICSQGLNGLALRNLWPRLEPSLSASGLDLSNGVKTAVWTQLLRVPSLQF 60
           MDA VSSAVEEICSQG NGLALRNLW RLEPSLSASGLDLSNGVK AVWTQLLRVPSLQF
Sbjct: 1   MDAVVSSAVEEICSQGQNGLALRNLWSRLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60

Query: 61  ETGKVTYDAKDPSIQSFEDAERLNLKVVAKEHLRDNFVGLYNVRSASSNMSAHQRRVLER 120
           E  K  +DAKDPSIQSFEDAERLNLKVVAKEHLRD+FVGLYNVRSA SNMSAHQRRVLER
Sbjct: 61  EASKGFHDAKDPSIQSFEDAERLNLKVVAKEHLRDSFVGLYNVRSAGSNMSAHQRRVLER 120

Query: 121 LAIAR 126
           LAIAR
Sbjct: 121 LAIAR 125

[Close]

BLAST of Lag0021600 vs. NCBI nr
Match: XP_038903737.1 (uncharacterized protein LOC120090216 isoform X2 [Benincasa hispida])

HSP 1 Score: 220.7 bits (561), Expect = 7.9e-54
Identity = 114/125 (91.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MDATVSSAVEEICSQGLNGLALRNLWPRLEPSLSASGLDLSNGVKTAVWTQLLRVPSLQF 60
           MDA VSSAVEEICSQG NGLALRNLW RLEPSLSASGLDLSNGVK AVWTQLLRVPSLQF
Sbjct: 1   MDAVVSSAVEEICSQGQNGLALRNLWSRLEPSLSASGLDLSNGVKAAVWTQLLRVPSLQF 60

Query: 61  ETGKVTYDAKDPSIQSFEDAERLNLKVVAKEHLRDNFVGLYNVRSASSNMSAHQRRVLER 120
           E  K  +DAKDPSIQSFEDAERLNLKVVAKEHLRD+FVGLYNVRSA SNMSAHQRRVLER
Sbjct: 61  EASKGFHDAKDPSIQSFEDAERLNLKVVAKEHLRDSFVGLYNVRSAGSNMSAHQRRVLER 120

Query: 121 LAIAR 126
           LAIAR
Sbjct: 121 LAIAR 125

[Close]

BLAST of Lag0021600 vs. NCBI nr
Match: KAG6597622.1 (hypothetical protein SDJN03_10802, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 110/125 (88.00%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MDATVSSAVEEICSQGLNGLALRNLWPRLEPSLSASGLDLSNGVKTAVWTQLLRVPSLQF 60
           MD  VSSAVEEICSQG NGL LRNLW RLEPSLSASGLDLSNGVKTAVWTQL  +PSLQF
Sbjct: 1   MDVIVSSAVEEICSQGQNGLTLRNLWSRLEPSLSASGLDLSNGVKTAVWTQLRSIPSLQF 60

Query: 61  ETGKVTYDAKDPSIQSFEDAERLNLKVVAKEHLRDNFVGLYNVRSASSNMSAHQRRVLER 120
           + GKVTYDAKDPSIQSFE+AERLN+KV+ KE+LRDNFVGLYNVRSASSNMSAHQRRVLER
Sbjct: 61  DAGKVTYDAKDPSIQSFENAERLNVKVMGKEYLRDNFVGLYNVRSASSNMSAHQRRVLER 120

Query: 121 LAIAR 126
           LAIAR
Sbjct: 121 LAIAR 125

[Close]

BLAST of Lag0021600 vs. NCBI nr
Match: XP_023539363.1 (uncharacterized protein LOC111800020 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 110/125 (88.00%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MDATVSSAVEEICSQGLNGLALRNLWPRLEPSLSASGLDLSNGVKTAVWTQLLRVPSLQF 60
           MD  VSSAVEEICSQG NGL LRNLW RLEPSLSASGLDLSNGVKTAVWTQL  +PSLQF
Sbjct: 1   MDVIVSSAVEEICSQGQNGLTLRNLWSRLEPSLSASGLDLSNGVKTAVWTQLRSIPSLQF 60

Query: 61  ETGKVTYDAKDPSIQSFEDAERLNLKVVAKEHLRDNFVGLYNVRSASSNMSAHQRRVLER 120
           + GKVTYDAKDPSIQSFE+AERLN+KV+ KE+LRDNFVGLYNVRSASSNMSAHQRRVLER
Sbjct: 61  DAGKVTYDAKDPSIQSFENAERLNVKVMGKEYLRDNFVGLYNVRSASSNMSAHQRRVLER 120

Query: 121 LAIAR 126
           LAIAR
Sbjct: 121 LAIAR 125

[Close]

BLAST of Lag0021600 vs. NCBI nr
Match: KAG7029063.1 (hypothetical protein SDJN02_10246 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 110/125 (88.00%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MDATVSSAVEEICSQGLNGLALRNLWPRLEPSLSASGLDLSNGVKTAVWTQLLRVPSLQF 60
           MD  VSSAVEEICSQG NGL LRNLW RLEPSLSASGLDLSNGVKTAVWTQL  +PSLQF
Sbjct: 1   MDVIVSSAVEEICSQGQNGLTLRNLWSRLEPSLSASGLDLSNGVKTAVWTQLRSIPSLQF 60

Query: 61  ETGKVTYDAKDPSIQSFEDAERLNLKVVAKEHLRDNFVGLYNVRSASSNMSAHQRRVLER 120
           + GKVTYDAKDPSIQSFE+AERLN+KV+ KE+LRDNFVGLYNVRSASSNMSAHQRRVLER
Sbjct: 61  DAGKVTYDAKDPSIQSFENAERLNVKVMGKEYLRDNFVGLYNVRSASSNMSAHQRRVLER 120

Query: 121 LAIAR 126
           LAIAR
Sbjct: 121 LAIAR 125

The following BLAST results are available for this feature:

BLAST of Lag0021600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903712.1	7.9e-54	91.20	uncharacterized protein LOC120090216 isoform X1 [Benincasa hispida] >XP_03890371...	[more]
XP_038903737.1	7.9e-54	91.20	uncharacterized protein LOC120090216 isoform X2 [Benincasa hispida]	[more]
KAG6597622.1	5.1e-53	88.00	hypothetical protein SDJN03_10802, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023539363.1	5.1e-53	88.00	uncharacterized protein LOC111800020 [Cucurbita pepo subsp. pepo]	[more]
KAG7029063.1	5.1e-53	88.00	hypothetical protein SDJN02_10246 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0021600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044210	Transcription facto Tfc3-like	PANTHER	PTHR15180	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021600.1	Lag0021600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042791	5S class rRNA transcription by RNA polymerase III
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000127	transcription factor TFIIIC complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity