Lag0021560 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021560
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	COP9 signalosome complex subunit 5b-like
Location	chr7: 9195081 .. 9198070 (-)
RNA-Seq Expression	Lag0021560
Synteny	Lag0021560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATGAAATGTCTGAGAGAAGTGGAGGGTGGGAAAGAGCGAAAAAGGTATGTGGAAATGGAAGATTAGCTGCTATTTATTCAGCATTACTGTTTGATTTGTGAATGAGATTGAAATTAATGTGAGGATTAATGAGTTTATGGGGTGGATTATATAGTGGGGAAAAGTGTATTGGGTGACTTGGAAAGTTCAATTGAAATAGCTTTTTATGGGAGTTTGCTATGCATTAGGCATGAGGATGGTGAATGCATTGAAGAGGGAAAGAAGAGGTAGTGGTGAGCTGAAATAAGTTAAGAATTAGGTGAAGAACATGTGAATGGCAGGTGATTTCTCATGAACTTTGGGATAAAGGAATCTAGGAAATTTGGTTTCTTTTTTACCAGAATTTACAATACATCTTTGACTTGTAGATCATGAGATTTCTGTACATGGATTGGCCTTTTAACTAAAAGAAGTTTGGTTGGGGAAAGATTATTTTGATAACACAAAGTGAAGGGTAACGGCAAATTTCGGGGGAAGTTTGGTTGTGCGAAACTTGAAGGTATTTCCATGTACTATACTTCATATTAAAAAAAAAAAAAAAAAAAAGAAAGAAGAAGAAGAAGAAGAAAAAACTAAAAAATCAAATCTTGTGGTGCAGGCCAAGGCAGCAAAGCACCGAGACCTTATCTTCTAAAGCAACAAAAAGTACAGGTTCGTCGATTCGAGGCCATGAATTCCCAATAATCCTAAAATTTCGACTTAATTTTTTATTTGGGAGTGTAAATTTGCAGTCAAAGTTTATTGATCTTGCCTGCTACTCACTAATCATGGCTTCCATTGTTGCTTCTCTTCCTCTGCCATTGTTGGCCCCTGGCAAAAGCTTCAACCTTTTGAATACTTCCCAGAAGCTCACTGTTTTTCCCATTGCAAGTAAGTTTATCACTCCAATCAAGATCCTAATTAGTTTAATTTGTCTTCCGTCTGAACTTCTTGCGTTGAAATTGATATCTGTTCGACCGTGTTTATTGTTGTGCTTTTGTTTGAATTTTGAACTTAATGCTTGGCACATTATTCGTGGGTGGAAGGGATATTTCGATGCAACGCTGAAAGCAACTTCGAGTTGGGATTTAGGTTTTTATGACTAGTGCAGTTTATTTTAGGGCTAGAAAATCTTTTAGTCTTTACTTCCATATATGGTTAGCACAGTTTTTAGACATGAAGTAGCCTAGACAAGTTGAGAGTGCTAGCTTCTTTCCATACACTAGCATTCACAATATACGATACAATTCACTCGCAGAATCTGAGTGGTTCACAATTTTTTCTGGTCTATTTGGTGTATAGACTACAAGGTTTGCCTTTTAGTTGAATTTGGAGTGATGAATGAGGCTTTATACAATAAGTTTTTGTTGAAATTTCTGAATGGAATTGTCAATTTTCACTCTTATTAAGCTTGCAATTTCTTTGATGTGTCAATCTGAGGGAAGTGTGTGTTGCTGCTACATTAGCTAGAATGATTACTAAGTGTGCCTCTTAGTTGCAATTTGGTGAGTTCAGACTTTGTGACAATTTTCCTGGATGAGTTTCATCTTTCCTTTTTCAATTGCACTTTTTATTATCCCTACAAATAGCTTTGATACTCAGCCAACCCTCCTATTATTTTGACAACAAGGGCTTTCATTGCTACCTCTTTGTAGTGTCCTAGTCAACCCCCTATTTTGACAACCCATATTTACTGACAATGATCTTGTAGCTTGATGCATTTGTCTCTCACATATCCTAATGGGAAAAGGTTTCAAACATTGCCTCTTTACCTACTCACTTCTGTATCAGTACTTTTAAATCTTGTTTGAGTTGAATGTCTTGATTATGAAATGGGAAGATAAAGCACGTCAAATGAGTACATGTCCTGAATCATCTAATTTTGGATTTTAAAAAAATAAATTATAAATCTTATGTTAGGAACACAATGATGCTCATTTCAGTTGAAAACTCTATACTATGTTTTGTATCAATATGATGGTAATGTCTTTCATGGCCAGATTGAACCACTGTTTCTGGTGTTGACATGTATTTTTGCCTTTGCCTTGGACGACTGTTGCAAGCTGATCAAAATTATTTTCCTGTGCACTTAGTGAAAGAGGATTGTTATGAGATTGATGAGTTTTTAAAACAAACGATGCCTGAGACTAGAGTTTTGAGCTTTTTTTTTCTTCCATGATTTATTTGAACTTGATTTCATACATGCTTGATTTTCGTTGAGATTAGTTGAGACTCTGGGAAGTTTTGTATTGCTTTTTGTTGAGATTGATTTTGGTAAGTGTCAGTTGCAACAGGAGTAAAAATTGTAACATTTATCCAAGTTTGATGTCCAATTTAATTTGATGATATTGAAAGTTTAGGTATTAATATCACTTGAGCTCTTGTGTATAATTCTGATATTTTTGAGCTGATCTTGTCTGAACTGTTGATCATACACCTTAAATTATTAGTTTGTTTTTGTCTAAACAAATGTTTTTCCTCACTCAATCTTTCAACTTCTTGGATTTTTTTAGTTTATTTGTCGTTCGGTACACCCTTTTTCTTAACTTGTACATATTATTGCAGTATTATGCGCTTGATATCACTTATTTCAAGTCTTCACTTGACTGCCACCTCTTGGATTTGCTTAGGAACAAGTACTGGGTCAATACTCTTTCATCTTCTCCTCTCTTGGGTAATGGAGATTATGTTGCTGGTCAAATCTCAGATTTAGGTATCCTTCATTACAACACACTCTTTTTACTACTCTGACTCTCTTTTTACTACTCTGACTCAAATCATTTGGTGTGATTTGATTCTTTTTTAGTGGTTTATTTTGTGCTTTGCAGCTGAAAAACTTGAGCAGTTGGAAAATCAGTTGGCTCACCCCCGCGTTGGGCCATTAATAGCTCCTTATTTATCTTATGCTTTCTTCTTTTATATATATACACGAGCACATGTTATTCTCTCTTGTACATGTGAATGA

mRNA sequence

ATGTTCGATGAAATGTCTGAGAGAAGTGGAGGGTGGGAAAGAGCGAAAAAGCTTTTTATGGGAGTTTGCTATGCATTAGGCATGAGGATGGTGAATGCATTGAAGAGGGAAAGAAGAGGCCAAGGCAGCAAAGCACCGAGACCTTATCTTCTAAAGCAACAAAAAGTACAGTCAAAGTTTATTGATCTTGCCTGCTACTCACTAATCATGGCTTCCATTGTTGCTTCTCTTCCTCTGCCATTGTTGGCCCCTGGCAAAAGCTTCAACCTTTTGAATACTTCCCAGAAGCTCACTGTTTTTCCCATTGCAAACTACAAGTATTATGCGCTTGATATCACTTATTTCAAGTCTTCACTTGACTGCCACCTCTTGGATTTGCTTAGGAACAAGTACTGGGTCAATACTCTTTCATCTTCTCCTCTCTTGGGTAATGGAGATTATGTTGCTGGTCAAATCTCAGATTTAGCTGAAAAACTTGAGCAGTTGGAAAATCAGTTGGCTCACCCCCGCGTTGGGCCATTAATAGCTCCTTATTTATCTTATGCTTTCTTCTTTTATATATATACACGAGCACATGTTATTCTCTCTTGTACATGTGAATGA

Coding sequence (CDS)

ATGTTCGATGAAATGTCTGAGAGAAGTGGAGGGTGGGAAAGAGCGAAAAAGCTTTTTATGGGAGTTTGCTATGCATTAGGCATGAGGATGGTGAATGCATTGAAGAGGGAAAGAAGAGGCCAAGGCAGCAAAGCACCGAGACCTTATCTTCTAAAGCAACAAAAAGTACAGTCAAAGTTTATTGATCTTGCCTGCTACTCACTAATCATGGCTTCCATTGTTGCTTCTCTTCCTCTGCCATTGTTGGCCCCTGGCAAAAGCTTCAACCTTTTGAATACTTCCCAGAAGCTCACTGTTTTTCCCATTGCAAACTACAAGTATTATGCGCTTGATATCACTTATTTCAAGTCTTCACTTGACTGCCACCTCTTGGATTTGCTTAGGAACAAGTACTGGGTCAATACTCTTTCATCTTCTCCTCTCTTGGGTAATGGAGATTATGTTGCTGGTCAAATCTCAGATTTAGCTGAAAAACTTGAGCAGTTGGAAAATCAGTTGGCTCACCCCCGCGTTGGGCCATTAATAGCTCCTTATTTATCTTATGCTTTCTTCTTTTATATATATACACGAGCACATGTTATTCTCTCTTGTACATGTGAATGA

Protein sequence

MFDEMSERSGGWERAKKLFMGVCYALGMRMVNALKRERRGQGSKAPRPYLLKQQKVQSKFIDLACYSLIMASIVASLPLPLLAPGKSFNLLNTSQKLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQLENQLAHPRVGPLIAPYLSYAFFFYIYTRAHVILSCTCE

Homology

[Close]

BLAST of Lag0021560 vs. NCBI nr
Match: KAG6585421.1 (COP9 signalosome complex subunit 5b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-30
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 196 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 255

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQLENQLAH R GPLIAP
Sbjct: 256 AEKLEQLENQLAHSRFGPLIAP 277

[Close]

BLAST of Lag0021560 vs. NCBI nr
Match: XP_022951989.1 (COP9 signalosome complex subunit 5b-like [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-30
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQLENQLAH R GPLIAP
Sbjct: 283 AEKLEQLENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. NCBI nr
Match: XP_023538610.1 (COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-30
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQLENQLAH R GPLIAP
Sbjct: 283 AEKLEQLENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. NCBI nr
Match: KAG7020342.1 (COP9 signalosome complex subunit 5b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-30
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQLENQLAH R GPLIAP
Sbjct: 283 AEKLEQLENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. NCBI nr
Match: XP_022961810.1 (COP9 signalosome complex subunit 5b-like [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ+ENQLAH R GPLIAP
Sbjct: 283 AEKLEQVENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. ExPASy Swiss-Prot
Match: Q8LAZ7 (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana OX=3702 GN=CSN5A PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YY+LDITYFKSSLD HLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 214 KIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 273

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ E+QLA+ R G  IAP
Sbjct: 274 AEKLEQAESQLANSRYGG-IAP 294

[Close]

BLAST of Lag0021560 vs. ExPASy Swiss-Prot
Match: Q8H936 (COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN5 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLD HLLDLL NKYWVNTLSSSPLLGN DYVAGQI DL
Sbjct: 215 KIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNRDYVAGQIFDL 274

Query: 156 AEKLEQLENQLAHPRVGPLI 176
           A+KLEQ E QLAH R G L+
Sbjct: 275 ADKLEQAEGQLAHSRYGMLM 294

[Close]

BLAST of Lag0021560 vs. ExPASy Swiss-Prot
Match: Q9FVU9 (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana OX=3702 GN=CSN5B PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-25
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YY+LD+TYFKSSLD HLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 214 KIEDFGVHCKQYYSLDVTYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 273

Query: 156 AEKLEQLENQLAHPRVGPLI 176
           AEKLEQ E+ L   R G ++
Sbjct: 274 AEKLEQAESHLVQSRFGGVV 293

[Close]

BLAST of Lag0021560 vs. ExPASy Swiss-Prot
Match: Q54PF3 (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=csn5 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-20
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YY+L+ITYFKSSLD  LLD L NKYWVNTLSSSP+  N DY+ GQI+DL
Sbjct: 209 KIEDFGVHCKQYYSLEITYFKSSLDQQLLDKLWNKYWVNTLSSSPIFSNRDYITGQINDL 268

Query: 156 AEKLEQLENQLAHPR 171
           +EKLEQ E QL+H R
Sbjct: 269 SEKLEQAETQLSHSR 283

[Close]

BLAST of Lag0021560 vs. ExPASy Swiss-Prot
Match: Q6P635 (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis OX=8364 GN=cops5 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYAL++TYFKSSLD  LL+LL NKYWVNTLSSS LL N DY  GQ+ DL
Sbjct: 210 KIEDFGVHCKQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDL 269

Query: 156 AEKLEQLENQL 167
           +EKLEQ E QL
Sbjct: 270 SEKLEQSEAQL 280

[Close]

BLAST of Lag0021560 vs. ExPASy TrEMBL
Match: A0A6J1GKC4 (COP9 signalosome complex subunit 5b-like OS=Cucurbita moschata OX=3662 GN=LOC111454705 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQLENQLAH R GPLIAP
Sbjct: 283 AEKLEQLENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. ExPASy TrEMBL
Match: A0A6J1KBB5 (COP9 signalosome complex subunit 5b-like OS=Cucurbita maxima OX=3661 GN=LOC111492347 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-30
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ+ENQLAH R GPLIAP
Sbjct: 283 AEKLEQVENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. ExPASy TrEMBL
Match: A0A5A7V9Z7 (COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003160 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-30
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ+ENQLAH R GPLIAP
Sbjct: 283 AEKLEQVENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. ExPASy TrEMBL
Match: A0A0A0LPC3 (MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G378560 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-30
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ+ENQLAH R GPLIAP
Sbjct: 283 AEKLEQVENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. ExPASy TrEMBL
Match: A0A6J1HDA2 (COP9 signalosome complex subunit 5b-like OS=Cucurbita moschata OX=3662 GN=LOC111462460 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.5e-30
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YYALDITYFKSSLDCHLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 223 KIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 282

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ+ENQLAH R GPLIAP
Sbjct: 283 AEKLEQVENQLAHSRFGPLIAP 304

[Close]

BLAST of Lag0021560 vs. TAIR 10
Match: AT1G22920.1 (COP9 signalosome 5A )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YY+LDITYFKSSLD HLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 214 KIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 273

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ E+QLA+ R G  IAP
Sbjct: 274 AEKLEQAESQLANSRYGG-IAP 294

[Close]

BLAST of Lag0021560 vs. TAIR 10
Match: AT1G22920.2 (COP9 signalosome 5A )

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YY+LDITYFKSSLD HLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 214 KIEDFGVHCKQYYSLDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 273

Query: 156 AEKLEQLENQLAHPRVGPLIAP 178
           AEKLEQ E+QLA+ R G  IAP
Sbjct: 274 AEKLEQAESQLANSRYGG-IAP 294

[Close]

BLAST of Lag0021560 vs. TAIR 10
Match: AT1G71230.1 (COP9-signalosome 5B )

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-26
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 96  KLTVFPIANYKYYALDITYFKSSLDCHLLDLLRNKYWVNTLSSSPLLGNGDYVAGQISDL 155
           K+  F +   +YY+LD+TYFKSSLD HLLDLL NKYWVNTLSSSPLLGNGDYVAGQISDL
Sbjct: 214 KIEDFGVHCKQYYSLDVTYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDL 273

Query: 156 AEKLEQLENQLAHPRVGPLI 176
           AEKLEQ E+ L   R G ++
Sbjct: 274 AEKLEQAESHLVQSRFGGVV 293

The following BLAST results are available for this feature:

BLAST of Lag0021560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585421.1	5.1e-30	85.37	COP9 signalosome complex subunit 5b, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022951989.1	5.1e-30	85.37	COP9 signalosome complex subunit 5b-like [Cucurbita moschata]	[more]
XP_023538610.1	5.1e-30	85.37	COP9 signalosome complex subunit 5b-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7020342.1	5.1e-30	85.37	COP9 signalosome complex subunit 5b [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961810.1	1.1e-29	84.15	COP9 signalosome complex subunit 5b-like [Cucurbita moschata]	[more]

BLAST of Lag0021560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAZ7	1.6e-26	76.83	COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana OX=3702 GN=CSN5A PE=...	[more]
Q8H936	1.0e-25	75.00	COP9 signalosome complex subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9FVU9	3.0e-25	71.25	COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana OX=3702 GN=CSN5B PE=...	[more]
Q54PF3	3.8e-20	64.00	COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=csn5 ...	[more]
Q6P635	1.4e-17	64.79	COP9 signalosome complex subunit 5 OS=Xenopus tropicalis OX=8364 GN=cops5 PE=2 S...	[more]

BLAST of Lag0021560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKC4	2.5e-30	85.37	COP9 signalosome complex subunit 5b-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KBB5	5.5e-30	84.15	COP9 signalosome complex subunit 5b-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5A7V9Z7	5.5e-30	84.15	COP9 signalosome complex subunit 5b-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0LPC3	5.5e-30	84.15	MPN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G378560 PE=3 SV...	[more]
A0A6J1HDA2	5.5e-30	84.15	COP9 signalosome complex subunit 5b-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Lag0021560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22920.1	1.1e-27	76.83	COP9 signalosome 5A	[more]
AT1G22920.2	1.1e-27	76.83	COP9 signalosome 5A	[more]
AT1G71230.1	2.1e-26	71.25	COP9-signalosome 5B	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 52..143 e-value: 1.5E-10 score: 42.8
None	No IPR available	PANTHER	PTHR10410	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	coord: 96..173
IPR040961	Cop9 signalosome subunit 5 C-terminal domain	PFAM	PF18323	CSN5_C	coord: 137..170 e-value: 2.7E-8 score: 34.6
IPR037740	COP9 signalosome complex subunit 5	PANTHER	PTHR10410:SF33	BNAC07G13420D PROTEIN	coord: 96..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021560.1	Lag0021560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000338	protein deneddylation
biological_process	GO:1990641	response to iron ion starvation
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0070122	isopeptidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0019784	NEDD8-specific protease activity