Lag0021517 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021517
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr7: 8635803 .. 8636689 (-)
RNA-Seq Expression	Lag0021517
Synteny	Lag0021517

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATTATGCTAAGAAAAGAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCCATCAGGTCCAATATAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTACCCATCAGGTCCAATATATTTCGAACTCAACCCTGGAGCTGAGGTCGAAATCTTCTCAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCCATCAGGTCCAATATATTTCGAACTCAACCCTGGAGCTGAGGTCGAAATCTTCTCAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCATCAGGTCCAATATATTTGAACCCAACCCTGGAAGCTGAGGTCGAAATCTTCTCAAATTTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTACCCATCAGGTCCAATATATTTCGAACCCAACCCTGGAAGCTGAGGTCGAAATCTTCTCAAATTTTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCACTATATTTCGAACCCAGCCCTAGAGCTGAGGTCGAAGTCTTCTCAAGTTCTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCACTATATTTCGAACCCAGCCCTAGAGTTGAGGTCGAAGTTTTCTCAAGTTTTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTTCAATATATTTCGAATGCAACCCTAGGGCTGAGGTCGAAGTCTTCTCAAATTTTGGCTAAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTATTCATCAGGTAA

mRNA sequence

ATGCACATTATGCTAAGAAAAGAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCCATCAGGTCCAATATAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTACCCATCAGGTCCAATATATTTCGAACTCAACCCTGGAGCTGAGGTCGAAATCTTCTCAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCATCAGGTCCAATATATTTGAACCCAACCCTGGAAGCTGAGGTCGAAATCTTCTCAAATTTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTACCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCACTATATTTCGAACCCAGCCCTAGAGCTGAGGTCGAAGTCTTCTCAAGTTCTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTTCAATATATTTCGAATGCAACCCTAGGGCTGAGGTCGAAGTCTTCTCAAATTTTGGCTAAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTATTCATCAGGTAA

Coding sequence (CDS)

ATGCACATTATGCTAAGAAAAGAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCCATCAGGTCCAATATAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTACCCATCAGGTCCAATATATTTCGAACTCAACCCTGGAGCTGAGGTCGAAATCTTCTCAAATTTTGGTTAAATCGAACCCAGTCCTGGAACAGAGGTCGAAGCCTGTACCATCAGGTCCAATATATTTGAACCCAACCCTGGAAGCTGAGGTCGAAATCTTCTCAAATTTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTACCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTCCACTATATTTCGAACCCAGCCCTAGAGCTGAGGTCGAAGTCTTCTCAAGTTCTGGTTAAATCGAACCCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGTCCTGGAACTGAGGTCGAAGCCTGTATCCATCAGGTTCAATATATTTCGAATGCAACCCTAGGGCTGAGGTCGAAGTCTTCTCAAATTTTGGCTAAATTGAACCCAGTCCTAGAACTGAGGTCGAAGCCTGTATTCATCAGGTAA

Protein sequence

MHIMLRKEILVKSNPVLEQRSKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPVPISPGTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKSSQILAKLNPVLELRSKPVFIR

Homology

[Close]

BLAST of Lag0021517 vs. NCBI nr
Match: KAA0042506.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-10
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 0


Query: 69  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIH 128
           P  E  ++   SGP+++ P    +V IFSNLVKS+P L+LRSKPV  P S   E EAC+ 
Sbjct: 223 PRSEAEAEACLSGPLFIKPNPGVKVYIFSNLVKSSPDLKLRSKPVYQPRSE-AEAEACLS 282

Query: 129 QVHYISNPALELRSKSSQVLVKSNPVLELRSKPV-SISPGTEVEACIHQVQYISNATLGL 188
              +I  P+   +  +   LVKS+P L+LR KPV       EVEAC+    +I  +  G 
Sbjct: 283 SPLFI-KPSPGAKVDAFSNLVKSSPDLKLRPKPVYQPRSEAEVEACLSSPLFIKPSP-GA 342

Query: 189 RSKSSQILAKLNPVLELRSKPVF 209
           +  +   L K +P L+LR KP +
Sbjct: 343 KVDAFSNLVKSSPDLKLRPKPFY 362

[Close]

BLAST of Lag0021517 vs. NCBI nr
Match: KAA0036934.1 (uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-10
Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = 0


Query: 31  IEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLE 90
           I+PSPR +V+   + V+  S+  L+LR K         P  E  ++   SGP+++ P+  
Sbjct: 808 IKPSPRAKVDVFLNLVK--SSPDLKLRPKPVY-----QPRSEAEAEACLSGPLFIKPSPR 867

Query: 91  AEVEIFSNLVKSNPVLELRSKPVPISPGTEV--EACIHQVHYISNPALELRSKSSQVLVK 150
           A+V++FSNLVKS+P L+LR KPV   P +EV  EAC+    +I  P+L  +      LVK
Sbjct: 868 AKVDVFSNLVKSSPDLKLRPKPV-YQPRSEVEAEACLSGPLFI-KPSLRAKVDVFLNLVK 927

Query: 151 SNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKS 190
           S+P L+LR K V            +QV Y+SN  L LR  S
Sbjct: 928 SSPDLKLRPKSV------------YQVLYLSNLVLELRLMS 947

[Close]

BLAST of Lag0021517 vs. NCBI nr
Match: KAA0067952.1 (uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-07
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 69  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIH 128
           P  E  ++   SGP+++ P+  A+V++FSNLVKS+P L+LR KPV  P S   E EAC+ 
Sbjct: 715 PRSEAEAEACLSGPLFIKPSPRAKVDVFSNLVKSSPDLKLRLKPVYQPRSE-AEAEACLS 774

Query: 129 QVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLR 187
              +I  P+   +      LVKS+P L+LR KPV            +QV Y+SN  L LR
Sbjct: 775 GPLFI-KPSPRGKVDVFLNLVKSSPDLKLRPKPV------------YQVLYLSNLALELR 820

[Close]

BLAST of Lag0021517 vs. NCBI nr
Match: TYK20464.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 8.3e-07
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 69  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIH 128
           P  E  ++   SGP+++ P+   +V++FSNLVKS+P L+LR KPV  P S   E EAC+ 
Sbjct: 223 PRSEAEAEACLSGPLFIKPSPRVKVDVFSNLVKSSPDLKLRPKPVYQPRSE-AEAEACLS 282

Query: 129 QVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLR 188
              +I  P+   +      LVK +P L+LRSKPV            ++V Y+SN  L LR
Sbjct: 283 GPLFI-KPSPRAKVDVFSNLVKLSPDLKLRSKPV------------YRVLYLSNLVLELR 331

Query: 189 SKS 190
             S
Sbjct: 343 LMS 331

[Close]

BLAST of Lag0021517 vs. NCBI nr
Match: TYK03242.1 (putative integrase [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-06
Identity = 59/172 (34.30%), Postives = 93/172 (54.07%), Query Frame = 0


Query: 1   MHIMLRKEILVKSNPVLEQR--SKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRS 60
           M ++L  E+ + S  VL +    +   IR+ +I+PSPR +V+  ++ V+  S+  L+ R 
Sbjct: 56  MEVVLPLEVEIPSLRVLMEAKLDEAEWIRAPLIKPSPRAKVDVFSNLVK--SSPDLKSRP 115

Query: 61  KSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PIS 120
           K         P  E  ++   SGP+++ P+  A+V++F NLVKS+P L+LR K V  P S
Sbjct: 116 KPDY-----QPRSEAEAEACLSGPLFIKPSPGAKVDVFLNLVKSSPDLKLRLKLVYQPKS 175

Query: 121 P-------GTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVS 162
                     EVEAC+    +I  P+   +      LVKS+P L+LR +PVS
Sbjct: 176 EAEAEACLSVEVEACLSGPLFI-RPSPRAKVDVFSNLVKSSPDLKLRPEPVS 219

[Close]

BLAST of Lag0021517 vs. ExPASy TrEMBL
Match: A0A5A7T0A1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = 0


Query: 31  IEPSPRTEVEACTHQVQYISNSTLELRSKSSQILVKSNPVLEQRSKPVPSGPIYLNPTLE 90
           I+PSPR +V+   + V+  S+  L+LR K         P  E  ++   SGP+++ P+  
Sbjct: 808 IKPSPRAKVDVFLNLVK--SSPDLKLRPKPVY-----QPRSEAEAEACLSGPLFIKPSPR 867

Query: 91  AEVEIFSNLVKSNPVLELRSKPVPISPGTEV--EACIHQVHYISNPALELRSKSSQVLVK 150
           A+V++FSNLVKS+P L+LR KPV   P +EV  EAC+    +I  P+L  +      LVK
Sbjct: 868 AKVDVFSNLVKSSPDLKLRPKPV-YQPRSEVEAEACLSGPLFI-KPSLRAKVDVFLNLVK 927

Query: 151 SNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLRSKS 190
           S+P L+LR K V            +QV Y+SN  L LR  S
Sbjct: 928 SSPDLKLRPKSV------------YQVLYLSNLVLELRLMS 947

[Close]

BLAST of Lag0021517 vs. ExPASy TrEMBL
Match: A0A5A7TKN3 (Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00600 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 0


Query: 69  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIH 128
           P  E  ++   SGP+++ P    +V IFSNLVKS+P L+LRSKPV  P S   E EAC+ 
Sbjct: 223 PRSEAEAEACLSGPLFIKPNPGVKVYIFSNLVKSSPDLKLRSKPVYQPRSE-AEAEACLS 282

Query: 129 QVHYISNPALELRSKSSQVLVKSNPVLELRSKPV-SISPGTEVEACIHQVQYISNATLGL 188
              +I  P+   +  +   LVKS+P L+LR KPV       EVEAC+    +I  +  G 
Sbjct: 283 SPLFI-KPSPGAKVDAFSNLVKSSPDLKLRPKPVYQPRSEAEVEACLSSPLFIKPSP-GA 342

Query: 189 RSKSSQILAKLNPVLELRSKPVF 209
           +  +   L K +P L+LR KP +
Sbjct: 343 KVDAFSNLVKSSPDLKLRPKPFY 362

[Close]

BLAST of Lag0021517 vs. ExPASy TrEMBL
Match: A0A5A7VHZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001360 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 49/120 (40.83%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 69  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIH 128
           P  E  ++   SGP+++ P+  A+V++FSNLVKS+P L+LR KPV  P S   E EAC+ 
Sbjct: 715 PRSEAEAEACLSGPLFIKPSPRAKVDVFSNLVKSSPDLKLRLKPVYQPRSE-AEAEACLS 774

Query: 129 QVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLR 187
              +I  P+   +      LVKS+P L+LR KPV            +QV Y+SN  L LR
Sbjct: 775 GPLFI-KPSPRGKVDVFLNLVKSSPDLKLRPKPV------------YQVLYLSNLALELR 820

[Close]

BLAST of Lag0021517 vs. ExPASy TrEMBL
Match: A0A5D3DAC8 (Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00320 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-07
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 69  PVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PISPGTEVEACIH 128
           P  E  ++   SGP+++ P+   +V++FSNLVKS+P L+LR KPV  P S   E EAC+ 
Sbjct: 223 PRSEAEAEACLSGPLFIKPSPRVKVDVFSNLVKSSPDLKLRPKPVYQPRSE-AEAEACLS 282

Query: 129 QVHYISNPALELRSKSSQVLVKSNPVLELRSKPVSISPGTEVEACIHQVQYISNATLGLR 188
              +I  P+   +      LVK +P L+LRSKPV            ++V Y+SN  L LR
Sbjct: 283 GPLFI-KPSPRAKVDVFSNLVKLSPDLKLRSKPV------------YRVLYLSNLVLELR 331

Query: 189 SKS 190
             S
Sbjct: 343 LMS 331

[Close]

BLAST of Lag0021517 vs. ExPASy TrEMBL
Match: A0A5D3BWN6 (Putative integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00590 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-07
Identity = 59/172 (34.30%), Postives = 93/172 (54.07%), Query Frame = 0


Query: 1   MHIMLRKEILVKSNPVLEQR--SKPVPIRSNIIEPSPRTEVEACTHQVQYISNSTLELRS 60
           M ++L  E+ + S  VL +    +   IR+ +I+PSPR +V+  ++ V+  S+  L+ R 
Sbjct: 56  MEVVLPLEVEIPSLRVLMEAKLDEAEWIRAPLIKPSPRAKVDVFSNLVK--SSPDLKSRP 115

Query: 61  KSSQILVKSNPVLEQRSKPVPSGPIYLNPTLEAEVEIFSNLVKSNPVLELRSKPV--PIS 120
           K         P  E  ++   SGP+++ P+  A+V++F NLVKS+P L+LR K V  P S
Sbjct: 116 KPDY-----QPRSEAEAEACLSGPLFIKPSPGAKVDVFLNLVKSSPDLKLRLKLVYQPKS 175

Query: 121 P-------GTEVEACIHQVHYISNPALELRSKSSQVLVKSNPVLELRSKPVS 162
                     EVEAC+    +I  P+   +      LVKS+P L+LR +PVS
Sbjct: 176 EAEAEACLSVEVEACLSGPLFI-RPSPRAKVDVFSNLVKSSPDLKLRPEPVS 219

The following BLAST results are available for this feature:

BLAST of Lag0021517 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042506.1	6.2e-10	39.86	putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu...	[more]
KAA0036934.1	6.2e-10	38.51	uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]	[more]
KAA0067952.1	4.9e-07	40.83	uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa]	[more]
TYK20464.1	8.3e-07	39.02	putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu...	[more]
TYK03242.1	1.9e-06	34.30	putative integrase [Cucumis melo var. makuwa]	[more]

BLAST of Lag0021517 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0021517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0A1	3.0e-10	38.51	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 ...	[more]
A0A5A7TKN3	3.0e-10	39.86	Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=...	[more]
A0A5A7VHZ0	2.4e-07	40.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DAC8	4.0e-07	39.02	Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=...	[more]
A0A5D3BWN6	9.0e-07	34.30	Putative integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G0...	[more]

BLAST of Lag0021517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021517.1	Lag0021517.1	mRNA