Lag0021452 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021452
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GATA transcription factor
Location	chr7: 7888850 .. 7889499 (-)
RNA-Seq Expression	Lag0021452
Synteny	Lag0021452

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGATCCGAGTGACAGAGTGAGTATTCGCCTCTGTTTTTGTTCTGATCTCGAGATTTTTGCTCTCTTTTTCTCGCTTTTTCACTGTGGTTTCTGATCGGTGGTTGTTAATGGCGCAGGGATCGGAATCGGAGGACATGTCCGGCAAGAACTCCGGCGGGGTGTCGTCGGAGGAGAGCCAAGTGAACGAGCAGAACAAGAAGACCTGCGCTGACTGTGGCACTTCGAAAACCCCTCTATGGCGAGGCGGGCCGGCTGGTCCAAAGGTGATTAGATCGATTGATCTGAACTCTAAACAACTTACAGAGGTGTTTTTGTTGATCCAAATCTCTGATTTCTGTTTTTGTTTCTCTCTGATTTGAACAGTCTCTTTGCAATGCTTGTGGGATCAGAAGTAGGAAGAAGAGGAGAGCGATATTGGGGTTGAGCAAAGGAGTTGTTGAGGATAAGAAGAGCAAAAGAAGCAGTAGTAGCAGCAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAGAGGCTTTTGGCTTTGGGTAGAGAGGTTTTGATGCAGAGATCTACTGTTGAGAGGCAGAGGAAGAAGTTGGGAGAAGAAGAACAAGCTGCTGTGCTGTTGATGGCTCTCTCATATGGCTCTGTTTATGCTTGA

mRNA sequence

ATGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATGTCCGGCAAGAACTCCGGCGGGGTGTCGTCGGAGGAGAGCCAAGTGAACGAGCAGAACAAGAAGACCTGCGCTGACTGTGGCACTTCGAAAACCCCTCTATGGCGAGGCGGGCCGGCTGGTCCAAAGTCTCTTTGCAATGCTTGTGGGATCAGAAGTAGGAAGAAGAGGAGAGCGATATTGGGGTTGAGCAAAGGAGTTGTTGAGGATAAGAAGAGCAAAAGAAGCAGTAGTAGCAGCAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAGAGGCTTTTGGCTTTGGGTAGAGAGGTTTTGATGCAGAGATCTACTGTTGAGAGGCAGAGGAAGAAGTTGGGAGAAGAAGAACAAGCTGCTGTGCTGTTGATGGCTCTCTCATATGGCTCTGTTTATGCTTGA

Coding sequence (CDS)

ATGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATGTCCGGCAAGAACTCCGGCGGGGTGTCGTCGGAGGAGAGCCAAGTGAACGAGCAGAACAAGAAGACCTGCGCTGACTGTGGCACTTCGAAAACCCCTCTATGGCGAGGCGGGCCGGCTGGTCCAAAGTCTCTTTGCAATGCTTGTGGGATCAGAAGTAGGAAGAAGAGGAGAGCGATATTGGGGTTGAGCAAAGGAGTTGTTGAGGATAAGAAGAGCAAAAGAAGCAGTAGTAGCAGCAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAGAGGCTTTTGGCTTTGGGTAGAGAGGTTTTGATGCAGAGATCTACTGTTGAGAGGCAGAGGAAGAAGTTGGGAGAAGAAGAACAAGCTGCTGTGCTGTTGATGGCTCTCTCATATGGCTCTGTTTATGCTTGA

Protein sequence

MMDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA

Homology

[Close]

BLAST of Lag0021452 vs. NCBI nr
Match: XP_022137770.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 261.9 bits (668), Expect = 3.3e-66
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MMDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 60
           M+DPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN
Sbjct: 2   MLDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 61

Query: 61  ACGIRSRKKRRAILGLSKGVVEDKKSKRSSS--SSNISNSKLRDSLKQRLLALGREVLMQ 120
           ACGIRSRKKRRAILGLSKGVVEDKKSK+SSS  SSN S+S+LRDSLKQRLLALGREVLMQ
Sbjct: 62  ACGIRSRKKRRAILGLSKGVVEDKKSKKSSSNISSNSSSSRLRDSLKQRLLALGREVLMQ 121

Query: 121 RSTVERQRKKLGEEEQAAVLLMALSYGSVYA 150
           RSTVERQRKKLGEEEQAAVLLMALSYGSVYA
Sbjct: 122 RSTVERQRKKLGEEEQAAVLLMALSYGSVYA 152

[Close]

BLAST of Lag0021452 vs. NCBI nr
Match: XP_038877875.1 (GATA transcription factor 15-like [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 7.4e-66
Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MMDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 60
           MMDPSDRGSESEDMSGKN+GGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN
Sbjct: 2   MMDPSDRGSESEDMSGKNTGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 61

Query: 61  ACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRLLALGREVLMQRS 120
           ACGIRSRKKRRAILGLSKGVVEDKK+K+   S+NISNSKLRDSLKQRLLALGREVLMQRS
Sbjct: 62  ACGIRSRKKRRAILGLSKGVVEDKKNKK---SNNISNSKLRDSLKQRLLALGREVLMQRS 121

Query: 121 TVERQRKKLGEEEQAAVLLMALSYGSVYA 150
           TVERQRKKLGEEEQAAVLLMALSYGSVYA
Sbjct: 122 TVERQRKKLGEEEQAAVLLMALSYGSVYA 147

[Close]

BLAST of Lag0021452 vs. NCBI nr
Match: XP_022950506.1 (GATA transcription factor 15-like [Cucurbita moschata] >KAG6597560.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029005.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 4.8e-65
Identity = 139/149 (93.29%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MMDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 60
           MMDPSDR SESED+S KNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN
Sbjct: 2   MMDPSDRVSESEDISSKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 61

Query: 61  ACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRLLALGREVLMQRS 120
           ACGIRSRKKRRAILGLSKGVVEDKK+KRS+S +NISNSKLRDSLKQRL+ALGREVLMQRS
Sbjct: 62  ACGIRSRKKRRAILGLSKGVVEDKKNKRSNSCNNISNSKLRDSLKQRLMALGREVLMQRS 121

Query: 121 TVERQRKKLGEEEQAAVLLMALSYGSVYA 150
           +VERQRKKLGEEEQAAVLLMALSYGSV+A
Sbjct: 122 SVERQRKKLGEEEQAAVLLMALSYGSVFA 150

[Close]

BLAST of Lag0021452 vs. NCBI nr
Match: XP_022956292.1 (GATA transcription factor 15-like [Cucurbita moschata] >XP_022979974.1 GATA transcription factor 15-like [Cucurbita maxima] >XP_023529146.1 GATA transcription factor 15-like [Cucurbita pepo subsp. pepo] >KAG6582187.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018583.1 GATA transcription factor 15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 140/149 (93.96%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MMDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 60
           MMDPSDRGSESED+SGKNSGGVSSEES VNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN
Sbjct: 1   MMDPSDRGSESEDISGKNSGGVSSEESIVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 60

Query: 61  ACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRLLALGREVLMQRS 120
           ACGIRSRKKRRAILGL++GVVEDKKSK+ SSS+NIS+SKLRDSLKQRLLALGREVLMQRS
Sbjct: 61  ACGIRSRKKRRAILGLNRGVVEDKKSKK-SSSNNISHSKLRDSLKQRLLALGREVLMQRS 120

Query: 121 TVERQRKKLGEEEQAAVLLMALSYGSVYA 150
           +VERQRKKLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 SVERQRKKLGEEEQAAVLLMALSYGSVYA 148

[Close]

BLAST of Lag0021452 vs. NCBI nr
Match: XP_023538706.1 (GATA transcription factor 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MMDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 60
           MMDPSDR SESED+S KNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN
Sbjct: 2   MMDPSDRVSESEDISSKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCN 61

Query: 61  ACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRLLALGREVLMQRS 120
           ACGIRSRKKRR+ILGLSKGVVEDKK+KRS+S  NISNSKLRDSLKQRL+ALGREVLMQRS
Sbjct: 62  ACGIRSRKKRRSILGLSKGVVEDKKNKRSNSCHNISNSKLRDSLKQRLMALGREVLMQRS 121

Query: 121 TVERQRKKLGEEEQAAVLLMALSYGSVYA 150
           +VERQRKKLGEEEQAAVLLMALSYGSV+A
Sbjct: 122 SVERQRKKLGEEEQAAVLLMALSYGSVFA 150

[Close]

BLAST of Lag0021452 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-34
Identity = 94/157 (59.87%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 1   MMDPSDRGSESEDMSGKNSGGVSSEESQVNEQN------KKTCADCGTSKTPLWRGGPAG 60
           M+DP+++  +SE M  K +   + EE   +  N      KK+CA CGTSKTPLWRGGPAG
Sbjct: 1   MLDPTEKVIDSESMESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAG 60

Query: 61  PKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRLLALGRE 120
           PKSLCNACGIR+RKKRR ++       EDKK K     S+  N K  DSLKQRL+ LGRE
Sbjct: 61  PKSLCNACGIRNRKKRRTLISNRS---EDKKKK-----SHNRNPKFGDSLKQRLMELGRE 120

Query: 121 VLMQRSTVERQRK-KLGEEEQAAVLLMALSY-GSVYA 150
           V+MQRST E QR+ KLGEEEQAAVLLMALSY  SVYA
Sbjct: 121 VMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Lag0021452 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-32
Identity = 89/151 (58.94%), Postives = 108/151 (71.52%), Query Frame = 0


Query: 1   MMDPSDRG--SESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSL 60
           M+D S++    +SE M  +    +    + VN++ KKTCADCGTSKTPLWRGGP GPKSL
Sbjct: 1   MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDK-KKTCADCGTSKTPLWRGGPVGPKSL 60

Query: 61  CNACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRLLALGREVLMQ 120
           CNACGIR+RKKRR       G  ++KK K+SSS     N K  +SLKQ L+ LG   + +
Sbjct: 61  CNACGIRNRKKRRG------GTEDNKKLKKSSSGG--GNRKFGESLKQSLMDLG---IRK 120

Query: 121 RSTVERQRKKLGEEEQAAVLLMALSYGSVYA 150
           RSTVE+QR+KLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 RSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Lag0021452 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-22
Identity = 78/181 (43.09%), Postives = 100/181 (55.25%), Query Frame = 0


Query: 6   DRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIR 65
           D   E  D+  +N     S     +   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+
Sbjct: 13  DSAGELSDVDNENCSSSGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIK 72

Query: 66  SRKKRRAILGLSKGVVEDKKSKRSSSSSNISNSKLRDSLKQRL----------------- 125
           SRKKR+A LG+     E+KK  R S+ +N  N   R++ K ++                 
Sbjct: 73  SRKKRQAALGMRS---EEKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKIC 132

Query: 126 -----------------LALGREV-LMQRSTVERQR--KKLGEEEQAAVLLMALSYGSVY 150
                            L LG +V +M+RS VE++R  +KLGEEE+AAVLLMALS  SVY
Sbjct: 133 NNKRSSSSSSNKGVSKFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVY 190

[Close]

BLAST of Lag0021452 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-13
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 35  KTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKRSSSSSN 94
           + C++C T+KTP+WRGGP GPKSLCNACGIR RK+RR+ L L   ++   KS  S   + 
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSEL-LGIHIIRSHKSLASKKINL 85

Query: 95  ISNSKLRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 150
           +S+S                         ++R+ L EEEQAA+ L+ LS  SV A
Sbjct: 86  LSSS-------------------HGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Lag0021452 vs. ExPASy Swiss-Prot
Match: Q9SZI6 (Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.0e-11
Identity = 57/182 (31.32%), Postives = 85/182 (46.70%), Query Frame = 0


Query: 9   SESEDMSGKNSGGVSSEESQVNEQNK---KTCADCGTSKTPLWRGGPAGPKSLCNACGIR 68
           S  +  +   S  +S+ E Q    N    + C+DC T+KTPLWR GP GPKSLCNACGIR
Sbjct: 170 SSKQHTNNDQSSNLSNSERQNGYNNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIR 229

Query: 69  SRKKRR---------AILGLSKGVVEDKKSKRSSSSSNI----SNSKLRDSLKQRLLALG 128
            RK RR         A+ G+S  V++ K   ++  S+ +    S   L+ +  +R++ L 
Sbjct: 230 QRKARRAAMATATATAVSGVSPPVMKKKMQNKNKISNGVYKILSPLPLKVNTCKRMITLE 289

Query: 129 REVLMQRSTVERQRKKLG--------------------------EEEQAAVLLMALSYGS 149
              L +    +     L                           +E++AA+LLMALS+G 
Sbjct: 290 ETALAEDLETQSNSTMLSSSDNIYFDDLALLLSKSSAYQQVFPQDEKEAAILLMALSHGM 349

The following BLAST results are available for this feature:

BLAST of Lag0021452 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137770.1	3.3e-66	95.36	GATA transcription factor 16-like [Momordica charantia]	[more]
XP_038877875.1	7.4e-66	95.30	GATA transcription factor 15-like [Benincasa hispida]	[more]
XP_022950506.1	4.8e-65	93.29	GATA transcription factor 15-like [Cucurbita moschata] >KAG6597560.1 GATA transc...	[more]
XP_022956292.1	1.8e-64	93.96	GATA transcription factor 15-like [Cucurbita moschata] >XP_022979974.1 GATA tran...	[more]
XP_023538706.1	1.8e-64	92.62	GATA transcription factor 15-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0021452 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	4.5e-34	59.87	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	1.5e-32	58.94	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q9LIB5	1.0e-22	43.09	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	2.6e-13	41.74	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q9SZI6	7.0e-11	31.32	Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 31..91 e-value: 7.5E-13 score: 58.7
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 37..71 e-value: 8.7E-17 score: 60.4
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 37..62
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 31..67 score: 12.347239
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 36..71 e-value: 1.66965E-13 score: 59.3086
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 31..106 e-value: 2.7E-17 score: 64.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 1..149
None	No IPR available	PANTHER	PTHR47172:SF1	OS01G0976800 PROTEIN	coord: 1..149
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 30..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021452.1	Lag0021452.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding