Lag0021417 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021417
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr7: 7453021 .. 7454075 (+)
RNA-Seq ExpressionLag0021417
SyntenyLag0021417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTGAACTATCACCGGGATCTTCCTTCGGATTGCCTCCTCTTTTCTCCTCGTCTCAATCTCCCAAACACCTCCTCCAATTCCTCGCTATATCTAAACCTTCGGTACCAAAATTTGCCTATTGGTGTGGTTTTCGAGGCCTTGGCAGATTTGGAACAAAGAGAGAATGAAGATTTGGTAAGTTTGAGAAGAAGAGGAGTGAGAGGGCATTAAAATGGTGAGAGATTGTTGAGTGCATTAAGAGGTTGTTTGGGGCAAGGAGTTGGAGTTCTGGAGTTTGGAGTTGTGAAGTCTGAAGTTAGGAAGTATGTGTTTGGGGAGCAGAGTTGTTAAATCCAGATTTCACAACTTTTCTCTCCAAACCAAGACTTTCTAACTTTACACCCCAAACACAAACTTCACCATTCTAACTCCTTGTCCCAAACAACCACTTAATGCACTCACAACAATCTCTCTCCCTTTTAATGCCCTCTCACTCCTCTTCATCTCAAACTTACCAAATCACCATTCTCTCTCTATTCCAAATTCACCATGACGAACCTCGAAACCACAACAATAGACAAATTTTGGTATCGAAGGCTGAGATACAACAAGGAATTGGAGGAGGTGTTTGGGAGATCGAGACGAGAAGAACAAAGGAGGCGATTCAAAGGAAGATCGTGGCAATAGTTCAAAGTCAGAAGAGCTTCGATTGGAGGAGGTTGAAGGAAGCTCAAATCCCTAGCATCAGAAAGCTCTTGAGGAGGAAATTGCGGCTGGTGAGTGCCGTGAGTGGCTCGATTCCGAAGGTTTTGGATAGATTCATAGATGACTAAGTGTATTTGGGAGACCTTTTTGCTGGAAATTACTTATTCGTTCAGGTGAATTCGAGATTCATTAAACCTTCAGATTTGAAAACATGTATGTGGAAGGAGAAGGAGAACAACGTGAAAAGGGAGAGAGGACACGAGAGATCTAAAGAACACATGGGATACAAGTGGCGAAGGATAGCAAATAATGAGAGAAACGAAGAGGGAGAGAGGATGGAGAGAAACATGAAACTAGACAAATGA

mRNA sequence

ATGATTCTGAACTATCACCGGGATCTTCCTTCGGATTGCCTCCTCTTTTCTCCTCGTCTCAATCTCCCAAACACCTCCTCCAATTCCTCGCTATATCTAAACCTTCGGTACCAAAATTTGCCTATTGGTGTGGTTTTCGAGGCCTTGGCAGATTTGGAACAAAGAGAGAATGAAGATTTGGCTGAGATACAACAAGGAATTGGAGGAGGTGTTTGGGAGATCGAGACGAGAAGAACAAAGGAGGCGATTCAAAGGAAGATCGTGGCAATAGTTCAAAGTCAGAAGAGCTTCGATTGGAGGAGGTTGAAGGAAGCTCAAATCCCTAGCATCAGAAAGCTCTTGAGGAGGAAATTGCGGCTGGTGAGTGCCGTGAGTGGCTCGATTCCGAAGGTGAATTCGAGATTCATTAAACCTTCAGATTTGAAAACATGTATGTGGAAGGAGAAGGAGAACAACGTGAAAAGGGAGAGAGGACACGAGAGATCTAAAGAACACATGGGATACAAGTGGCGAAGGATAGCAAATAATGAGAGAAACGAAGAGGGAGAGAGGATGGAGAGAAACATGAAACTAGACAAATGA

Coding sequence (CDS)

ATGATTCTGAACTATCACCGGGATCTTCCTTCGGATTGCCTCCTCTTTTCTCCTCGTCTCAATCTCCCAAACACCTCCTCCAATTCCTCGCTATATCTAAACCTTCGGTACCAAAATTTGCCTATTGGTGTGGTTTTCGAGGCCTTGGCAGATTTGGAACAAAGAGAGAATGAAGATTTGGCTGAGATACAACAAGGAATTGGAGGAGGTGTTTGGGAGATCGAGACGAGAAGAACAAAGGAGGCGATTCAAAGGAAGATCGTGGCAATAGTTCAAAGTCAGAAGAGCTTCGATTGGAGGAGGTTGAAGGAAGCTCAAATCCCTAGCATCAGAAAGCTCTTGAGGAGGAAATTGCGGCTGGTGAGTGCCGTGAGTGGCTCGATTCCGAAGGTGAATTCGAGATTCATTAAACCTTCAGATTTGAAAACATGTATGTGGAAGGAGAAGGAGAACAACGTGAAAAGGGAGAGAGGACACGAGAGATCTAAAGAACACATGGGATACAAGTGGCGAAGGATAGCAAATAATGAGAGAAACGAAGAGGGAGAGAGGATGGAGAGAAACATGAAACTAGACAAATGA

Protein sequence

MILNYHRDLPSDCLLFSPRLNLPNTSSNSSLYLNLRYQNLPIGVVFEALADLEQRENEDLAEIQQGIGGGVWEIETRRTKEAIQRKIVAIVQSQKSFDWRRLKEAQIPSIRKLLRRKLRLVSAVSGSIPKVNSRFIKPSDLKTCMWKEKENNVKRERGHERSKEHMGYKWRRIANNERNEEGERMERNMKLDK
Homology
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BLAST of Lag0021417 vs. NCBI nr
Match: KAG6602403.1 (E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-05
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 1  MILNYHRDLPSDCLLF---SPRLNLPNTSSNSSLYLNLRYQNLPIGVV 46
          +ILN+  DLP++ LL    SPRL+LPN SSNSSLYL+LRY+NLP G V
Sbjct: 31 LILNHRFDLPTNLLLLLLASPRLDLPNASSNSSLYLSLRYRNLPGGAV 78

The following BLAST results are available for this feature:
BLAST of Lag0021417 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602403.15.5e-0564.58E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0021417 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021417.1Lag0021417.1mRNA