Lag0021392 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021392
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CAP-Gly domain-containing linker protein 1-like
Location	chr7: 7192157 .. 7194080 (+)
RNA-Seq Expression	Lag0021392
Synteny	Lag0021392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACGCCGACTCTTCCACTCCATCCGTCCCTGCCTCCGCTCCTCTATCAGCTGTCAGTTCCGTTCATTTTCTTCGTTTTCGGTTTCTGATTGTGGTTGATTTGTTTTTTTGGACTTACGAACTTGTTCTTGCTTTAACTTACTCTCGCCTTGCTGTTTCTATCTAACATTGCTGTTTTTGTTTCTCTTGTTGACAGAAAAAGGAGAATCTGACCCCCATTGGGTCGAAAATTACGGTATTACTTTCTCATGACGCCTTTCTAATTCTTGAGTACGTTAACTTGATTTGTGAATTTTACTGTTACTTGCGATGCTGAGATTCTGCACTTTGAGGGTAGGATAGTTGAGGGCTAAATTGTACATTGTTTGAAGTTGGGAATGGGAATTGGTTAAGACTCTGGCTTATGTGCTGTATACGTTTGGGACTTTTCAAAGTGTATTGCTAAACAGCGTTAAGATTAAGGATATGTATAAAAGATTAGATACATCCCAACCTATCCAGCTTAACTTGGATTTTGGGGTCGTAGTTTAACAATTAACATGGTATCGAAGTAGGAAGTCCCGAGTTCAAACTTTTCTAGTGTCATTTCCTTCCCGTTGCATATAATTTCCAAATCTAGAAGTGGGAAGGAGTGTTAATTAACATATATGAAAGAGACCTATTAGCTTAAGCTTTTGAGTGGTCCGTATATTACCATTGTTTCAAAGTTTTTTGGATATGGGATAGCTGCAATTAAACTTCAATCTTCTGAGATTTGACATGTTTGTTCCCAGGAATTGAACGAATCAAGAGCAGAGCTGCTTAATAGAATTCAATCTCTTAAGCAGGTGAAGTCTAGATATACAATGTCCAAACTGTGAGCCTGATTAAGTTGGATGCTCTTGTTCAGTTAGTTGTTTCTGTCCTCTGATTTTGTGAACTTTCCTTGTGTTTGAGCATTTCAGGATCTCCAGAATTGGAGGTCAAAGCTAGACTCGCAAGTTCACACCTACCGAAGCGTAAGTTAATAGTAGTGAACTTTTGTACTGCTTGTCATCTTCTTCTTCTTTATCCCTTTCTATGTGTTCATTTACTTCTTAAAGGTAACTTTGCCCTGCCAGCATGCCATGTTCTAAGATATTTGTGCTTGAGTTTTCTTTGATGGGTCTACATGGTACATAAACAAGTTGGTCATCCAAGTGGTCTACATGATACATACGGCTTGTTACTGCGGGCTCAAAATGGTGTTGTTTAATTGATTCTTGGTAGTTCAAAAGATTTCAAGTCTGCTATTTTCCATTGAAGGATATTTAATCCTTCAATACCTTGGTTTAGAAGAAAAAGAAACATAGGATATTGATGATAATGAAAGATTTCCTTTTGTTGGTCATAGATATTCCCTTTCTGTTATGCTTTTGTATCTGTATGTTCAAGCAGCACTTGATACATACCTTCAATCTTCATACAGGAACTCTCCGAACTCAAGAAATCGCTCAATGTTGAGGTAGAGCAACTTCGCACGGTAAGCAATCCTTCACAGATTGAATATGCTTTAAACTTTTTGATGCCATTTGGAAGGGTAGTAAATTCAGCATGAAAGCAGGAATTCCAAGAACTAAGGACCACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTGTAAGTTCTATTTCTAGCGACTTTCATACTCAAATGCTCCAATGAATTTCCTCAGAACACCACCAACCCACCCCGTCCCACCGCATACGTTAACTGCTATTGAAGAAAATTATGAATCTTGCAGCTTCAGGATGTCTCTGTAGACAATATTGAGACTCAAAATCAACATCCAATAGCGGAAAGCAGTGACAAGGAAGACGAAGACGAGTCTAAGAAGGATGGACGTGGCTTAACAGAGGATAAGGGGAATGGAGCTGAAAATTAG

mRNA sequence

ATGGCGAACGCCGACTCTTCCACTCCATCCGTCCCTGCCTCCGCTCCTCTATCAGCTAAAAAGGAGAATCTGACCCCCATTGGGTCGAAAATTACGGAATTGAACGAATCAAGAGCAGAGCTGCTTAATAGAATTCAATCTCTTAAGCAGGATCTCCAGAATTGGAGGTCAAAGCTAGACTCGCAAGTTCACACCTACCGAAGCGAACTCTCCGAACTCAAGAAATCGCTCAATGTTGAGGTAGAGCAACTTCGCACGGAATTCCAAGAACTAAGGACCACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTCTTCAGGATGTCTCTGTAGACAATATTGAGACTCAAAATCAACATCCAATAGCGGAAAGCAGTGACAAGGAAGACGAAGACGAGTCTAAGAAGGATGGACGTGGCTTAACAGAGGATAAGGGGAATGGAGCTGAAAATTAG

Coding sequence (CDS)

ATGGCGAACGCCGACTCTTCCACTCCATCCGTCCCTGCCTCCGCTCCTCTATCAGCTAAAAAGGAGAATCTGACCCCCATTGGGTCGAAAATTACGGAATTGAACGAATCAAGAGCAGAGCTGCTTAATAGAATTCAATCTCTTAAGCAGGATCTCCAGAATTGGAGGTCAAAGCTAGACTCGCAAGTTCACACCTACCGAAGCGAACTCTCCGAACTCAAGAAATCGCTCAATGTTGAGGTAGAGCAACTTCGCACGGAATTCCAAGAACTAAGGACCACCCTTCAGCAGCAACAAGAAGATGTGACAACTAGCCTGAGGAACTTGGGTCTTCAGGATGTCTCTGTAGACAATATTGAGACTCAAAATCAACATCCAATAGCGGAAAGCAGTGACAAGGAAGACGAAGACGAGTCTAAGAAGGATGGACGTGGCTTAACAGAGGATAAGGGGAATGGAGCTGAAAATTAG

Protein sequence

MANADSSTPSVPASAPLSAKKENLTPIGSKITELNESRAELLNRIQSLKQDLQNWRSKLDSQVHTYRSELSELKKSLNVEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNIETQNQHPIAESSDKEDEDESKKDGRGLTEDKGNGAEN

Homology

[Close]

BLAST of Lag0021392 vs. NCBI nr
Match: XP_022973788.1 (uncharacterized protein LOC111472345 [Cucurbita maxima] >XP_022975171.1 uncharacterized protein LOC111474206 [Cucurbita maxima])

HSP 1 Score: 232.3 bits (591), Expect = 2.9e-57
Identity = 133/157 (84.71%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1   MANADSSTPSVPASAPLSAKKENLTPIGSKITELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MANADSSTPS PA AP+SAKKENLTPIG KI ELNESRAELL+RIQ LKQDLQNWR KLD
Sbjct: 1   MANADSSTPSTPAPAPMSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60

Query: 61  SQVHTYRSELSELKKSLNVEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNIE 120
           +QVHTYRSELSELKKSLN+EVEQLRTEFQELRTTLQQQQEDVTTSLRNLG+QD S DN +
Sbjct: 61  TQVHTYRSELSELKKSLNLEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120

Query: 121 TQNQHPIAESSDKEDEDESKKDG-RGLTEDKGNGAEN 157
           T++QHP+AESSDKEDEDE KKDG  GLTE KGN AE+
Sbjct: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTECKGNEAEH 157

[Close]

BLAST of Lag0021392 vs. NCBI nr
Match: KAG6597517.1 (hypothetical protein SDJN03_10697, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 133/157 (84.71%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MANADSSTPSVPASAPLSAKKENLTPIGSKITELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MANADSSTPS PA AP SAKKENLTPIG KI ELNESRAELL+RIQ LKQDLQNWR KLD
Sbjct: 1   MANADSSTPSTPAPAPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60

Query: 61  SQVHTYRSELSELKKSLNVEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNIE 120
           +QV+TYRSELSELKKSLNVEVEQLRTEF+ELRTTLQQQQEDVTTSLRNLG+QD S DN +
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120

Query: 121 TQNQHPIAESSDKEDEDESKKDG-RGLTEDKGNGAEN 157
           T++QHP+AESSDKEDEDE KKDG  GLTE KGN AEN
Sbjct: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN 157

[Close]

BLAST of Lag0021392 vs. NCBI nr
Match: XP_022948034.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata] >KAG7028975.1 hypothetical protein SDJN02_10158 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 132/157 (84.08%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MANADSSTPSVPASAPLSAKKENLTPIGSKITELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MANADSSTPS PA  P SAKKENLTPIG KI ELNESRAELL+RIQ LKQDLQNWR KLD
Sbjct: 1   MANADSSTPSTPAPVPTSAKKENLTPIGLKIMELNESRAELLDRIQFLKQDLQNWRLKLD 60

Query: 61  SQVHTYRSELSELKKSLNVEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNIE 120
           +QV+TYRSELSELKKSLNVEVEQLRTEF+ELRTTLQQQQEDVTTSLRNLG+QD S DN +
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNLGVQDDSKDNNK 120

Query: 121 TQNQHPIAESSDKEDEDESKKDG-RGLTEDKGNGAEN 157
           T++QHP+AESSDKEDEDE KKDG  GLTE KGN AEN
Sbjct: 121 TRHQHPVAESSDKEDEDEGKKDGLHGLTEGKGNEAEN 157

[Close]

BLAST of Lag0021392 vs. NCBI nr
Match: XP_023527984.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 4.2e-56
Identity = 132/156 (84.62%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MANADSSTPSVPASAPLSAKKENLTPIGSKITELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MA+ADSS+PS  A APLSAK ENLTPIGSKI+ELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSAAAPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  SQVHTYRSELSELKKSLNVEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNIE 120
           +QV+TYRSELSELKKSLNVEVE LRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDN E
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TQNQHPIAESSDKEDEDESKKDGRGLTEDKGNGAEN 157
           T++QHP AE SDKED DE+ K+GRG TE+KGN   N
Sbjct: 121 TRHQHP-AEISDKEDADEATKEGRGSTEEKGNEVGN 155

[Close]

BLAST of Lag0021392 vs. NCBI nr
Match: XP_022979959.1 (CAP-Gly domain-containing linker protein 1 [Cucurbita maxima])

HSP 1 Score: 227.3 bits (578), Expect = 9.4e-56
Identity = 132/156 (84.62%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 1   MANADSSTPSVPASAPLSAKKENLTPIGSKITELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MA+ADSS+PSVPA APLSAK ENLTPIGSKI+ELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSVPAPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  SQVHTYRSELSELKKSLNVEVEQLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNIE 120
           +QV+TYRSELSELKKSLNVEVE LRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDN E
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TQNQHPIAESSDKEDEDESKKDGRGLTEDKGNGAEN 157
           T++QHP AE S+KED  E+ K+G G TE+KGN A N
Sbjct: 121 TRHQHP-AEISEKEDAGEATKEGCGSTEEKGNEAGN 155

The following BLAST results are available for this feature:

BLAST of Lag0021392 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973788.1	2.9e-57	84.71	uncharacterized protein LOC111472345 [Cucurbita maxima] >XP_022975171.1 uncharac...	[more]
KAG6597517.1	8.5e-57	84.71	hypothetical protein SDJN03_10697, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948034.1	2.5e-56	84.08	CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata] >KAG7028975...	[more]
XP_023527984.1	4.2e-56	84.62	CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022979959.1	9.4e-56	84.62	CAP-Gly domain-containing linker protein 1 [Cucurbita maxima]	[more]

BLAST of Lag0021392 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..101
None	No IPR available	COILS	Coil	Coil	coord: 31..58
None	No IPR available	GENE3D	1.20.58.130		coord: 39..100 e-value: 2.1E-6 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..156
None	No IPR available	PANTHER	PTHR34681	UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN	coord: 1..141
None	No IPR available	PANTHER	PTHR34681:SF2	UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN	coord: 1..141
None	No IPR available	SUPERFAMILY	75704	Mitotic arrest deficient-like 1, Mad1	coord: 18..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021392.1	Lag0021392.1	mRNA