Lag0021391 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021391
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionflowering-promoting factor 1-like protein 1
Locationchr7: 7170303 .. 7170638 (-)
RNA-Seq ExpressionLag0021391
SyntenyLag0021391
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGCGTCTGGATTTTCGACAACGGCGTGATCCGCCTGGTGGAGACGGCGGCGGAGGGCGGCGGGAGCAGCAGCAGCCGGCGGCGGAAAGTTCTGATCTACACGCCGACGAACGAGGCGATGACGTCATACCCAGTGCTTAAAAGCAAGCTGTGGAGCTTGGGATGGGAAGTTTACTATGAAGATTCAGAGCTGGTGCAGTTTCACAAGCCTTCTTCTGTGGACCTTATTTCTCTTCCCACTGACTTCAACAAGCTCAAGGCCAGGCACCTATACGACATCGTTGTGAGGAATCGTAATCTTTTTCAAGTTAAGGACATGCAGTCCCAGTAA

mRNA sequence

ATGTCGGGCGTCTGGATTTTCGACAACGGCGTGATCCGCCTGGTGGAGACGGCGGCGGAGGGCGGCGGGAGCAGCAGCAGCCGGCGGCGGAAAGTTCTGATCTACACGCCGACGAACGAGGCGATGACGTCATACCCAGTGCTTAAAAGCAAGCTGTGGAGCTTGGGATGGGAAGTTTACTATGAAGATTCAGAGCTGGTGCAGTTTCACAAGCCTTCTTCTGTGGACCTTATTTCTCTTCCCACTGACTTCAACAAGCTCAAGGCCAGGCACCTATACGACATCGTTGTGAGGAATCGTAATCTTTTTCAAGTTAAGGACATGCAGTCCCAGTAA

Coding sequence (CDS)

ATGTCGGGCGTCTGGATTTTCGACAACGGCGTGATCCGCCTGGTGGAGACGGCGGCGGAGGGCGGCGGGAGCAGCAGCAGCCGGCGGCGGAAAGTTCTGATCTACACGCCGACGAACGAGGCGATGACGTCATACCCAGTGCTTAAAAGCAAGCTGTGGAGCTTGGGATGGGAAGTTTACTATGAAGATTCAGAGCTGGTGCAGTTTCACAAGCCTTCTTCTGTGGACCTTATTTCTCTTCCCACTGACTTCAACAAGCTCAAGGCCAGGCACCTATACGACATCGTTGTGAGGAATCGTAATCTTTTTCAAGTTAAGGACATGCAGTCCCAGTAA

Protein sequence

MSGVWIFDNGVIRLVETAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEVYYEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKDMQSQ
Homology
BLAST of Lag0021391 vs. NCBI nr
Match: XP_022956217.1 (flowering-promoting factor 1-like protein 1 [Cucurbita moschata] >KAG6582219.1 Flowering-promoting factor 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018618.1 Flowering-promoting factor 1-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 92/111 (82.88%), Postives = 101/111 (90.99%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVETAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEVY 60
           MSGVW+FDNGVIRLVE A     + +  RRKVLIYTPTNEAMTSYPVLK+KL SLGWEVY
Sbjct: 1   MSGVWVFDNGVIRLVERAG-AAETGAGGRRKVLIYTPTNEAMTSYPVLKNKLASLGWEVY 60

Query: 61  YEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKDMQSQ 112
           YEDSE++QFHKPSSVDLIS+PTDFNKLKARHLYDIVV+NRN+FQVKDMQSQ
Sbjct: 61  YEDSEVMQFHKPSSVDLISVPTDFNKLKARHLYDIVVKNRNVFQVKDMQSQ 110

BLAST of Lag0021391 vs. NCBI nr
Match: XP_023528953.1 (flowering-promoting factor 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43
Identity = 90/111 (81.08%), Postives = 100/111 (90.09%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVETAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEVY 60
           MSGVW+FDNGVIRLVE A     + +  RRKVLIY PTNEAMTSYP+LK+KL SLGWEVY
Sbjct: 1   MSGVWVFDNGVIRLVERAG-AAETGAGGRRKVLIYKPTNEAMTSYPILKNKLASLGWEVY 60

Query: 61  YEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKDMQSQ 112
           YEDSE++QFHKPSSVDLIS+PTDFNKLKARHLYDIVV+NRN+FQVKDMQSQ
Sbjct: 61  YEDSEVMQFHKPSSVDLISIPTDFNKLKARHLYDIVVKNRNVFQVKDMQSQ 110

BLAST of Lag0021391 vs. NCBI nr
Match: XP_022979994.1 (flowering-promoting factor 1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 91/111 (81.98%), Postives = 100/111 (90.09%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVETAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEVY 60
           MSGVW+FDNGVIRLVE A     + +  RRKVLIYTPTNEAMTSY VLK+KL SLGWEVY
Sbjct: 1   MSGVWVFDNGVIRLVERAG-AVETGAGGRRKVLIYTPTNEAMTSYSVLKNKLASLGWEVY 60

Query: 61  YEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKDMQSQ 112
           YEDSE++QFHKPSSVDLIS+PTDFNKLKARHLYDIVV+NRN+FQVKDMQSQ
Sbjct: 61  YEDSEVMQFHKPSSVDLISVPTDFNKLKARHLYDIVVKNRNVFQVKDMQSQ 110

BLAST of Lag0021391 vs. NCBI nr
Match: KGN57101.1 (hypothetical protein Csa_010574 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 4.2e-42
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVET--AAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWE 60
           MSGVWIFDNGVIRLVE   AAE   S  S +RKVLIYTPTNEAMTSY VL++KL  LGWE
Sbjct: 1   MSGVWIFDNGVIRLVERAGAAETTTSGGSGKRKVLIYTPTNEAMTSYEVLENKLSMLGWE 60

Query: 61  VYYEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKDMQS 111
           VYYED E++QFHKPSSVDLISLP DFNKLKARHLYDIVVRNRNLFQVKDMQS
Sbjct: 61  VYYEDGEVMQFHKPSSVDLISLPKDFNKLKARHLYDIVVRNRNLFQVKDMQS 112

BLAST of Lag0021391 vs. NCBI nr
Match: XP_022948046.1 (flowering-promoting factor 1-like protein 2 [Cucurbita moschata] >XP_022973790.1 flowering-promoting factor 1-like protein 2 [Cucurbita maxima] >XP_023539907.1 flowering-promoting factor 1-like protein 2 [Cucurbita pepo subsp. pepo] >KAG6597516.1 Flowering-promoting factor 1-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.0 bits (458), Expect = 5.5e-42
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVETAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEVY 60
           MSGVW+FDNGVIRL    AEGGG S +R R VLIYT TNEAMT+  VLK+KL SLGWE+Y
Sbjct: 1   MSGVWVFDNGVIRL----AEGGGGSRNRGRNVLIYTATNEAMTTLTVLKNKLLSLGWEIY 60

Query: 61  YEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKDMQSQ 112
           YED+E+VQFHKPSSVDLISLPTDFNK+KARHLYD+VVRNRNLF VKDMQSQ
Sbjct: 61  YEDAEIVQFHKPSSVDLISLPTDFNKVKARHLYDVVVRNRNLFHVKDMQSQ 107

BLAST of Lag0021391 vs. ExPASy Swiss-Prot
Match: Q9LXB5 (Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLP2 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-28
Identity = 64/110 (58.18%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVETAAEGGGSS--SSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWE 60
           MSGVW+F+NGVIRLVE   + GG S  S  RR VL+Y PT EA++SY  L+  L SLGWE
Sbjct: 1   MSGVWVFNNGVIRLVENPNQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGWE 60

Query: 61  VYYE-DSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKD 108
            Y+  DS+L+Q+HK SS+DLISLP DF+K  + ++YDIVV+N N F V+D
Sbjct: 61  RYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVRD 110

BLAST of Lag0021391 vs. ExPASy Swiss-Prot
Match: O24340 (Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-28
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVETAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEVY 60
           MSGVW+F NGVIRLVE   + GG ++S RRKV++Y PT E ++SY  L+  L SLGWE Y
Sbjct: 1   MSGVWVFKNGVIRLVENPNQSGGDTNS-RRKVMVYLPTGEVISSYSTLEQILRSLGWERY 60

Query: 61  Y--EDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKD 108
           +   D++L+QFHK SS+DLISLP DF K  + ++YDIVV+N N F V+D
Sbjct: 61  FGGGDTDLLQFHKRSSIDLISLPKDFTKFSSVYMYDIVVKNPNYFHVRD 108

BLAST of Lag0021391 vs. ExPASy Swiss-Prot
Match: O23624 (Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27
Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVETAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEVY 60
           MSGVW+F NGVIRLVE   +  GS +  RRKV++Y PT E ++SY  L+  L SLGWE Y
Sbjct: 1   MSGVWVFKNGVIRLVENPNQ-SGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWERY 60

Query: 61  Y--EDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKD 108
           +   D++L+QFHK SS+DLISLP DF K  + ++YDIVV+N N F V+D
Sbjct: 61  FGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 108

BLAST of Lag0021391 vs. ExPASy Swiss-Prot
Match: Q9LGE3 (Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RAA1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVE-TAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKLWSLGWEV 60
           MSGVW+F NGV+RLVE   A  G + +  RRK L++TP+ + ++SY  L+++L +LGWE 
Sbjct: 1   MSGVWVFKNGVVRLVEKQQATAGTAVAGGRRKALVHTPSGQVVSSYAALEARLTALGWER 60

Query: 61  YYEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKD 108
           YYED  L QFHK  S+DLISLP DF+   + H+YDIVV+NR+ F+V D
Sbjct: 61  YYEDPSLFQFHKRGSLDLISLPADFSAFSSVHMYDIVVKNRDSFRVVD 108

BLAST of Lag0021391 vs. ExPASy Swiss-Prot
Match: Q0E1D7 (Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0460200 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-24
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 0

Query: 1   MSGVWIFDNGVIRLVE--------TAAEGGGSSSSRRRKVLIYTPTNEAMTSYPVLKSKL 60
           M+GVW+F +G++R VE        +A +GGG     RRKVL++ P+ E + SY VL+ +L
Sbjct: 1   MAGVWVFKDGIVRRVENPGSEESSSAGDGGGGG---RRKVLVHVPSGEVVASYEVLERRL 60

Query: 61  WSLGWEVYYEDSELVQFHKPSSVDLISLPTDFNKLKARHLYDIVVRNRNLFQVKD 108
             LGWE Y  D  L+QFH+ S+V LIS+P DF+K K  H+YDIVV+ RN+F+V+D
Sbjct: 61  RELGWERYLTDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRD 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022956217.11.0e-4382.88flowering-promoting factor 1-like protein 1 [Cucurbita moschata] >KAG6582219.1 F... [more]
XP_023528953.15.0e-4381.08flowering-promoting factor 1-like protein 1 [Cucurbita pepo subsp. pepo][more]
XP_022979994.11.9e-4281.98flowering-promoting factor 1-like protein 1 [Cucurbita maxima][more]
KGN57101.14.2e-4283.04hypothetical protein Csa_010574 [Cucumis sativus][more]
XP_022948046.15.5e-4280.18flowering-promoting factor 1-like protein 2 [Cucurbita moschata] >XP_022973790.1... [more]
Match NameE-valueIdentityDescription
Q9LXB52.1e-2858.18Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=F... [more]
O243403.6e-2856.88Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1[more]
O236241.8e-2755.96Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1[more]
Q9LGE32.3e-2753.70Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica OX=3... [more]
Q0E1D71.4e-2448.70Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica OX=3... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33433:SF6FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 2coord: 1..108
IPR039274Flowering-promoting factor 1PANTHERPTHR33433FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021391.1Lag0021391.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009909 regulation of flower development