Lag0021390 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021390
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	chr7: 7163247 .. 7163810 (+)
RNA-Seq Expression	Lag0021390
Synteny	Lag0021390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCTTGGACGAGAAGGAGACCACCGTCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCTCTCACGAAGGCCCCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGGTCTATTACGTCAGTGATTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGCAAGTTCACTCATGGCGGCAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGCAATCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCTGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTGCCTTTGGGATTCGGAGTTGCGGCGAAGTCCACTCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGACGAACTTTGA

mRNA sequence

ATGAGGCCCTTGGACGAGAAGGAGACCACCGTCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCTCTCACGAAGGCCCCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGGTCTATTACGTCAGTGATTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGCAAGTTCACTCATGGCGGCAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGCAATCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCTGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTGCCTTTGGGATTCGGAGTTGCGGCGAAGTCCACTCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGACGAACTTTGA

Coding sequence (CDS)

ATGAGGCCCTTGGACGAGAAGGAGACCACCGTCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCTCTCACGAAGGCCCCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGGTCTATTACGTCAGTGATTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGCAAGTTCACTCATGGCGGCAGTTTCCATCTCACTGTTCACTCGCTAGGGCTCTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGCAATCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCTGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTGCCTTTGGGATTCGGAGTTGCGGCGAAGTCCACTCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGACGAACTTTGA

Protein sequence

MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLVKRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL

Homology

[Close]

BLAST of Lag0021390 vs. NCBI nr
Match: XP_038878449.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida])

HSP 1 Score: 385.6 bits (989), Expect = 2.5e-103
Identity = 184/187 (98.40%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI+PGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENISPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lag0021390 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.6 bits (976), Expect = 8.0e-102
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPSHEGP PNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 204

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 205 LRMEDEL 211

[Close]

BLAST of Lag0021390 vs. NCBI nr
Match: KAG6582220.1 (60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379.4 bits (973), Expect = 1.8e-101
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPSHEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lag0021390 vs. NCBI nr
Match: XP_022137772.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNL+NIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR NLVALGTCIGK THGGSFHLTV SLGLLAPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lag0021390 vs. NCBI nr
Match: XP_022956278.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956279.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956280.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956281.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956282.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956283.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956284.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 182/187 (97.33%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPSHEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLA NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+A KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lag0021390 vs. ExPASy Swiss-Prot
Match: A4QND5 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-62
Identity = 116/187 (62.03%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Lag0021390 vs. ExPASy Swiss-Prot
Match: Q6DFH9 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.9e-62
Identity = 116/187 (62.03%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+ GTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Lag0021390 vs. ExPASy Swiss-Prot
Match: Q4T2X8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-61
Identity = 113/187 (60.43%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + +L  LAP AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN A   GVVVYSM+DVPLGFGVAAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]

BLAST of Lag0021390 vs. ExPASy Swiss-Prot
Match: Q9WV50 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.2e-61
Identity = 115/187 (61.50%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]

BLAST of Lag0021390 vs. ExPASy Swiss-Prot
Match: Q9Y221 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.1e-61
Identity = 114/187 (60.96%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

The following BLAST results are available for this feature:

BLAST of Lag0021390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878449.1	2.5e-103	98.40	60S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida]	[more]
XP_023528444.1	8.0e-102	97.33	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo...	[more]
KAG6582220.1	1.8e-101	97.33	60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita ar...	[more]
XP_022137772.1	2.3e-101	96.79	60S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia]	[more]
XP_022956278.1	2.3e-101	97.33	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02...	[more]

BLAST of Lag0021390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QND5	1.7e-62	62.03	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83...	[more]
Q6DFH9	2.9e-62	62.03	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q4T2X8	1.9e-61	60.43	60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O...	[more]
Q9WV50	4.2e-61	61.50	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101...	[more]
Q9Y221	7.1e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 103..178 e-value: 4.1E-17 score: 72.9
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 104..182 e-value: 1.3E-21 score: 76.7
IPR016686	Ribosome biogenesis factor, NIP7	PIRSF	PIRSF017190	NIP7	coord: 1..187 e-value: 3.0E-79 score: 262.6
IPR040598	UPF0113, pre-PUA domain	PFAM	PF17833	UPF0113_N	coord: 2..90 e-value: 8.4E-24 score: 83.9
None	No IPR available	GENE3D	3.10.450.220		coord: 1..101 e-value: 2.5E-37 score: 128.8
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..187
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..187
None	No IPR available	PROSITE	PS50890	PUA	coord: 102..178 score: 14.46877
None	No IPR available	SUPERFAMILY	88802	Pre-PUA domain	coord: 1..101
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 102..187 e-value: 8.0E-42 score: 143.0
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 103..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021390.1	Lag0021390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding