Lag0021193 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021193
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 5, chloroplastic
Locationchr7: 5433269 .. 5433902 (-)
RNA-Seq ExpressionLag0021193
SyntenyLag0021193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCTGTTCTTCCCTCCCCGTTCTATCTTTCGATCCACTCCCCAAAATCATCTTCAAATCTTCTGAAATTACGGCTACAGCGTTCTCGAATCAAAGAAATCCGGGATTCAATGGAATCCTCGCCTCCAAGTTGCTCGGAAAATTGTCGAGGAGAAGCCGCTTGCGGCGGCTGAATGCGGCCGGATTGTCCGAGATTGAACCCGACTTAAACGAAGACCCTGTGAATCGTTGGGAAACCAACAGTGTCAGCGCTGTACGAACCACTCTTATTGTGCTCTCTCTGTGCCTCTTTGTCTTGCTGGTTTTGTTATGTTGTTTTAGGTTTCCAAGTTATGAATTGCAATGAGTTTAATTGGGTTTATTGAAGTTAAACTAAAATTAAACTCAATGTTAGTTAATTTTTAGTTCTTCCTTGAACCACGGGGCAGAGATTTTAACAATTTTGTGTTGCATCTCAGGAAGATTTTGAGTATGGAGTATACGATGGGCATCACACTTACTTCGAAGGGGAGAAAAAGGGTTAGTTCGTTTACATACGTAACTGAACTTATTTCCACTCCTTGTTTAGCTGAACATTTGAATGGTTTTGGAATCTAGAAGAACTTGGTATCACAGTTGAGCCAAGGTGA

mRNA sequence

ATGGCGCTCTGTTCTTCCCTCCCCGTTCTATCTTTCGATCCACTCCCCAAAATCATCTTCAAATCTTCTGAAATTACGGCTACAGCGTTCTCGAATCAAAGAAATCCGGGATTCAATGGAATCCTCGCCTCCAAGTTGCTCGGAAAATTGTCGAGGAGAAGCCGCTTGCGGCGGCTGAATGCGGCCGGATTGTCCGAGATTGAACCCGACTTAAACGAAGACCCTGTGAATCGTTGGGAAACCAACAGTGTCAGCGCTGAAGATTTTGAGTATGGAGTATACGATGGGCATCACACTTACTTCGAAGGGGAGAAAAAGGAAGAACTTGGTATCACAGTTGAGCCAAGGTGA

Coding sequence (CDS)

ATGGCGCTCTGTTCTTCCCTCCCCGTTCTATCTTTCGATCCACTCCCCAAAATCATCTTCAAATCTTCTGAAATTACGGCTACAGCGTTCTCGAATCAAAGAAATCCGGGATTCAATGGAATCCTCGCCTCCAAGTTGCTCGGAAAATTGTCGAGGAGAAGCCGCTTGCGGCGGCTGAATGCGGCCGGATTGTCCGAGATTGAACCCGACTTAAACGAAGACCCTGTGAATCGTTGGGAAACCAACAGTGTCAGCGCTGAAGATTTTGAGTATGGAGTATACGATGGGCATCACACTTACTTCGAAGGGGAGAAAAAGGAAGAACTTGGTATCACAGTTGAGCCAAGGTGA

Protein sequence

MALCSSLPVLSFDPLPKIIFKSSEITATAFSNQRNPGFNGILASKLLGKLSRRSRLRRLNAAGLSEIEPDLNEDPVNRWETNSVSAEDFEYGVYDGHHTYFEGEKKEELGITVEPR
Homology
[Close]
BLAST of Lag0021193 vs. NCBI nr
Match: KAG7028861.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.6e-44
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MALCSSLPVLSFDPLPKIIFKSSEITATAFSNQRNPGFNGILASKLLGKLSRRSRLRRLN 60
           MALCSSLPVLSF+PLPKIIFKSSEI+ATAFSN+  PG NGI A+KLLGK +R SRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVNRWETNSVSAEDFEYGVYDGHHTYFEGEKK 107
           AAGLSEIEPDLNEDPV+RWETNSVSAEDFEYGVYDGHHTYFEGEKK
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKK 106

[Close]
BLAST of Lag0021193 vs. NCBI nr
Match: KAG6597401.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MALCSSLPVLSFDPLPKIIFKSSEITATAFSNQRNPGFNGILASKLLGKLSRRSRLRRLN 60
           MALCSSLPVLSF+PLPKIIFKSS I+ATAFSN+  PG NGI A+KLLGK +R SRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVNRWETNSVSAEDFEYGVYDGHHTYFEGEKK 107
           AAGLSEIEPDLNEDPV+RWETNSVSAEDFEYGVYDGHHTYFEGEKK
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKK 106

[Close]
BLAST of Lag0021193 vs. NCBI nr
Match: XP_022974431.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022974433.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucurbita maxima] >XP_022974434.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_023540737.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023540738.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MALCSSLPVLSFDPLPKIIFKSSEITATAFSNQRNPGFNGILASKLLGKLSRRSRLRRLN 60
           MALCSSLPVLSF+PLPKIIFKSS I+ATAFSN+  PG NGI A+KLLGK +R SRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVNRWETNSVSAEDFEYGVYDGHHTYFEGEKK 107
           AAGLSEIEPDLNEDPV+RWETNSVSAEDFEYGVYDGHHTYFEGEKK
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKK 106

[Close]
BLAST of Lag0021193 vs. NCBI nr
Match: XP_022948649.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata] >XP_022948658.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 4.0e-43
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   MALCSSLPVLSFDPLPKIIFKSSEITATAFSNQRNPGFNGILASKLLGKLSRRSRLRRLN 60
           MALCSSLPVLSF+PLPKIIFKSS I ATAFSN+  PG NGI A+KLLGK +R SRLRRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGIRATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSEIEPDLNEDPVNRWETNSVSAEDFEYGVYDGHHTYFEGEKK 107
           AAGLSEIEPDLNEDPV+RWETNSVSAEDFEYGVYDGHHTYFEGEKK
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKK 106

[Close]
BLAST of Lag0021193 vs. NCBI nr
Match: XP_038878594.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 174.5 bits (441), Expect = 5.4e-40
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 0 

Query: 1   MALCSSLPVLSFDPLPKIIFKSSEITATAFSNQRNPGFNGILASKLLGKLSRRSRLRRLN 60
           MA CSSLPVLSF+P+PKIIFKSSEI+ATAFSNQ  P  NGI ASKLLG L+RRS  RRLN
Sbjct: 1   MAPCSSLPVLSFNPIPKIIFKSSEISATAFSNQTIPVSNGISASKLLGILTRRSLSRRLN 60

Query: 61  AAGLSEIEPDLNEDPVNRWETNSVSAEDFEYGVYDGHHTYFEGEKK 107
           AAGLSEIE DLNEDPV+RWETNSVS EDFEYGVYDGHHTYFEGEKK
Sbjct: 61  AAGLSEIELDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKK 106

[Close]
BLAST of Lag0021193 vs. ExPASy Swiss-Prot
Match: Q9FG89 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-14
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 48  GKLSRRSRLRRL-NAAGLSEIEPDLNEDPVNRWETNSVSAEDFEYGVYDGHHTYFEGE 105
           GK  RR +L +L +AAGLS+IEPD+NEDP+ ++ETNS+  EDF+YG YDG HTY+EGE
Sbjct: 35  GKSGRRLKLAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGE 92

The following BLAST results are available for this feature:
BLAST of Lag0021193 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028861.13.6e-4488.68Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ... [more]
KAG6597401.12.3e-4387.74Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ... [more]
XP_022974431.12.3e-4387.74photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbit... [more]
XP_022948649.14.0e-4387.74photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata]... [more]
XP_038878594.15.4e-4084.91photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida][more]
BLAST of Lag0021193 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FG891.8e-1463.79Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thali... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034569Photosynthetic NDH subunit of subcomplex B 5, chloroplasticPANTHERPTHR36399PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 5, CHLOROPLASTICcoord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021193.1Lag0021193.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane