Lag0021066 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0021066
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein PROTON GRADIENT REGULATION 5, chloroplastic-like
Location	chr7: 4339170 .. 4339637 (-)
RNA-Seq Expression	Lag0021066
Synteny	Lag0021066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCAATTTCTCCAACTGGGCTTCATAAACCTCTTTCCTCCTCCTTCCATGGAGCCTGGGGGACTTCAATCTGTGGCGACAACAGCGCCGCGCTGATCAAGTCGGTCCCGGAAGTGATTCGTGTCGCAAGGCCGGCGAGATCCCGGCCGATGATGAAGAATGTTAACGAAGGGAAAGGTCTATTTGCTCCTGTTGTTGTTCTGGCTCGAAACATTATTGGAAAGAAACGTTTCAACCAGTTGAGAGGCAAGGCCATTGCCCTGCACTCCCAGGTAAACTAGTCGAGACCCATTTGAAATGACTTTCTAAGTGTTTAAAAAATTGAACTTTCCGAACTTGTGCTGTGTTTTGGACAGATAATTACTGAGTTCTGCAAATCTATAGGAGCTGATGCAAAGCAGAGGCAGGGATTGATTAGGCTAGCCAAGAAGAATGGAGAAAGATTGGGATTCCTTGCTTGA

mRNA sequence

ATGGCAGCTTCAATTTCTCCAACTGGGCTTCATAAACCTCTTTCCTCCTCCTTCCATGGAGCCTGGGGGACTTCAATCTGTGGCGACAACAGCGCCGCGCTGATCAAGTCGGTCCCGGAAGTGATTCGTGTCGCAAGGCCGGCGAGATCCCGGCCGATGATGAAGAATGTTAACGAAGGGAAAGGTCTATTTGCTCCTGTTGTTGTTCTGGCTCGAAACATTATTGGAAAGAAACGTTTCAACCAGTTGAGAGGCAAGGCCATTGCCCTGCACTCCCAGATAATTACTGAGTTCTGCAAATCTATAGGAGCTGATGCAAAGCAGAGGCAGGGATTGATTAGGCTAGCCAAGAAGAATGGAGAAAGATTGGGATTCCTTGCTTGA

Coding sequence (CDS)

ATGGCAGCTTCAATTTCTCCAACTGGGCTTCATAAACCTCTTTCCTCCTCCTTCCATGGAGCCTGGGGGACTTCAATCTGTGGCGACAACAGCGCCGCGCTGATCAAGTCGGTCCCGGAAGTGATTCGTGTCGCAAGGCCGGCGAGATCCCGGCCGATGATGAAGAATGTTAACGAAGGGAAAGGTCTATTTGCTCCTGTTGTTGTTCTGGCTCGAAACATTATTGGAAAGAAACGTTTCAACCAGTTGAGAGGCAAGGCCATTGCCCTGCACTCCCAGATAATTACTGAGTTCTGCAAATCTATAGGAGCTGATGCAAAGCAGAGGCAGGGATTGATTAGGCTAGCCAAGAAGAATGGAGAAAGATTGGGATTCCTTGCTTGA

Protein sequence

MAASISPTGLHKPLSSSFHGAWGTSICGDNSAALIKSVPEVIRVARPARSRPMMKNVNEGKGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA

Homology

[Close]

BLAST of Lag0021066 vs. NCBI nr
Match: XP_038883871.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 234.6 bits (597), Expect = 4.8e-58
Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MAASISPTGLHKPLSSSFHGAWGTSICGDNSAALIKSVPEVIRVARPARSRPMMKNVNEG 60
           MA SI+ TGLHKPLSSSFHG WGTSICGDNS  LIKSVPEV+RVA+P R RPMMKN+NEG
Sbjct: 1   MATSIAATGLHKPLSSSFHGGWGTSICGDNSIVLIKSVPEVVRVAKPVRFRPMMKNINEG 60

Query: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of Lag0021066 vs. NCBI nr
Match: XP_004134044.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucumis sativus] >KGN56822.1 hypothetical protein Csa_010680 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-57
Identity = 115/127 (90.55%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MAASISPTGLHKPLSSSFHGAWGTSICGDNSAALIKSVPEVIRVARPARSRPMMKNVNEG 60
           MA SIS TGLHKPLSSSFHG WGTSICGDNS  LIKSVP+V+RVA+P R RPMMKN+NEG
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSICGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           E+LGFLA
Sbjct: 121 EKLGFLA 127

[Close]

BLAST of Lag0021066 vs. NCBI nr
Match: XP_008438472.1 (PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis melo] >KAA0049216.1 protein PROTON GRADIENT REGULATION 5 [Cucumis melo var. makuwa] >TYK17342.1 protein PROTON GRADIENT REGULATION 5 [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 2.4e-57
Identity = 113/127 (88.98%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MAASISPTGLHKPLSSSFHGAWGTSICGDNSAALIKSVPEVIRVARPARSRPMMKNVNEG 60
           MA SIS TGLHKPLSSSFHG WGTS+CGDNS  LIKSVP+V+RVA+P R RPMMKN+NEG
Sbjct: 1   MATSISATGLHKPLSSSFHGGWGTSVCGDNSIVLIKSVPDVVRVAKPVRFRPMMKNINEG 60

Query: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KG+FAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGIFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           E+LGFLA
Sbjct: 121 EKLGFLA 127

[Close]

BLAST of Lag0021066 vs. NCBI nr
Match: KAG7018811.1 (Protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MAASISPTGLHKPLSSSFHGAWGTSICGDNSAALIKSVPEVIRVARPARSRPMMKNVNEG 60
           MA S+S  G HKPL S+FHG WGTSICGDNS  LIKSVPE IRVA+P R RP+MKN+NEG
Sbjct: 1   MATSVSVAGFHKPLYSTFHGGWGTSICGDNSTVLIKSVPEAIRVAKPVRFRPVMKNINEG 60

Query: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQ+ITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of Lag0021066 vs. NCBI nr
Match: KAG6582412.1 (Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 109/127 (85.83%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MAASISPTGLHKPLSSSFHGAWGTSICGDNSAALIKSVPEVIRVARPARSRPMMKNVNEG 60
           MA S+S  G HKPL S+FHG WGTSICGDNS  LIKSVPE +RVA+P R RP+MKN+NEG
Sbjct: 1   MATSVSVAGFHKPLYSTFHGGWGTSICGDNSTVLIKSVPEAVRVAKPVRFRPVMKNINEG 60

Query: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLAKKNG 120
           KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQ+ITEFCKSIGADAKQRQGLIRLAKKNG
Sbjct: 61  KGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 128
           ERLGFLA
Sbjct: 121 ERLGFLA 127

[Close]

BLAST of Lag0021066 vs. ExPASy Swiss-Prot
Match: Q9SL05 (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR5 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-42
Identity = 95/131 (72.52%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 2   AASISPTGLHKPL-SSSFHGAWGTSICG-DNSAALIKSV--PEVIRVARPA-RSRPMMKN 61
           AASIS  G ++ L  +SF+G WG+SI G D    L K+V  P+  RV+R A R+ PMMKN
Sbjct: 3   AASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKN 62

Query: 62  VNEGKGLFAPVVVLARNIIGKKRFNQLRGKAIALHSQIITEFCKSIGADAKQRQGLIRLA 121
           VNEGKGLFAP+VV+ RN++GKKRFNQLRGKAIALHSQ+ITEFCKSIGADAKQRQGLIRLA
Sbjct: 63  VNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLA 122

Query: 122 KKNGERLGFLA 128
           KKNGERLGFLA
Sbjct: 123 KKNGERLGFLA 133

The following BLAST results are available for this feature:

BLAST of Lag0021066 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883871.1	4.8e-58	91.34	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida]	[more]
XP_004134044.1	1.1e-57	90.55	protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucumis sativus] >KGN56822....	[more]
XP_008438472.1	2.4e-57	88.98	PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucumis mel...	[more]
KAG7018811.1	2.9e-55	86.61	Protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucurbita argyrosperma subs...	[more]
KAG6582412.1	3.8e-55	85.83	Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosp...	[more]

BLAST of Lag0021066 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SL05	2.3e-42	72.52	Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037497	Protein PROTON GRADIENT REGULATION 5	PANTHER	PTHR35709	PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC	coord: 1..127
None	No IPR available	PANTHER	PTHR35709:SF3	PROTON GRADIENT REGULATION 5	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0021066.1	Lag0021066.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009644	response to high light intensity
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009055	electron transfer activity