Lag0021010 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0021010
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglycine-rich cell wall structural protein
Locationchr7: 3943987 .. 3945712 (+)
RNA-Seq ExpressionLag0021010
SyntenyLag0021010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAGAAGGTTTTTGTAATGCTGTTGTTGGCAGCGGTTGCGGCGGCGCGTAGCGTTCCTGGTGGCGAGCAGGTGGAGGTCGTGGACGCCGTTGAAGTGAAGGCGGCGGAGTTGCCGGCGGGTGGTGGCGGCGCTTCTGTTCGTGATGAGAAGAATTTTATCTATGGCGGAGTTGGCGGCTTTGCTGGCATGGGCGGGTACTGTTATTTTAAACTAACCCTAAACTCGATTTTTAAATGATGGGAGTTTTTCATTTGTACTTTTAATACATTTGGAGATTAGCGAAAAACTTTTATATTTTTAAGATTCCGTTTAATAGTCATTTGGTTTTTTATTTTTTTAAACCATGCTTATAAACACTATTCATAAGTTTATTATTATTATTATTATTTTGAAAGGAAGTTTGTTAATTTTTTCGTTTTGTTTATTTACAATATTCCATGTTTTCAAAAATTAAGTTGGTTTTAAACTAAAGAATGTAGGCATTCGTTTTGATAACCATTTCGTTTTTTATTTTTTGTTTTTAAAAATTAAACTTATAAGCACTACTTTTATTCACAAGTTTCTTTGTTTTGCAATCTATATCATTCCCTTATTTTCAAAAACCAAGTTAGATTTTGATAAAAAAAAAAATGAGTATTTTTTTAATACTTATTTTTGTTTTCAAATGTGTAATTAACAAAAATTAAAAACCCATTAATAAGGAAATTGGGAGGAAACAAGCCTAGTTTTCAAAAACAAAAAATCAGATGGATATCAAATGGACCTATAGTTTTCAAAATTTTGTTTTTATTTTTAGAATTCAAATGTATACTTAACAAAAATGAAAACAATTATGATAAGTAGTTGGAATATCAAAACAAAAGTAATTTTCAAAACGGTTCCCCCACCCTAATTAAACTAATAAGGTAGGATATTTGATATTTTGAACCTCTAATATGGTTCAAAATACCTGTTTTGATCAGTATATAAACTTTATGCCAATCGAGCCATGCTTTTGTTTGCAATTTGATATTTTAGTTTGATACCATGCATGTTAGAGAGCTAGCGCTACTAAAGATGTTGTAGAAAAAAAAAAGTTTTAAAATAAAACAATTGTAAAAGCAATTTAGGAATTGAATAAAATGATCGAAAATATTAAAGGAAAAAAAAATACTTTTGCTCGTTTAAGAATATTTTTACCACCTTGTAAAAAAAAACATTTACTTACATTTTGAAAACGTTTTTAAAAAGTGTAGCAAAACATACAATAAAATAAAATAAAATAAAAAAATAAAACATGAGAGGACGTAGTATATATAAATTTAATTTTGTTAGGTAAAAACTAAAAATAAAATTATTTTAGCGTTTAATATTCTATTCATACAATAATAACAGGTACGCAGGGCTGGGTATGCCGATGCTGGGTGGTGGCGCTGGGATCGGAAAATTCGGTGGAATTGGTGGGTTCGCCGGAATTGGAAACTTGGGTGGCGCCGGCGGTCTAGGCGGCGGAGGAGCTGGTGGGATCGGCGGTTTGGGAGGCGGAGGACCTATTCTTCCCGGTGGCGGAAATGGAATAGGCGGTCTAGCCGGGCATGGACTTGGCGGAGCTGGTGGAATAGGTGGTCTGGCCGGACATGGACTTGGCGGAGCTGGTGGTGTCGGAGGATCCGGCGGCGGTGCGGTGGGAAACGGCGTAGCCGGCGGCGGTCCTCCGGTCAGTGGCGTTTTTCATCCATAA

mRNA sequence

ATGATGGAGAAGGTTTTTGTAATGCTGTTGTTGGCAGCGGTTGCGGCGGCGCGTAGCGTTCCTGGTGGCGAGCAGGTGGAGGTCGTGGACGCCGTTGAAGTGAAGGCGGCGGAGTTGCCGGCGGGTGGTGGCGGCGCTTCTGTTCGTGATGAGAAGAATTTTATCTATGGCGGAGTTGGCGGCTTTGCTGGCATGGGCGGGTACGCAGGGCTGGGTATGCCGATGCTGGGTGGTGGCGCTGGGATCGGAAAATTCGGTGGAATTGGTGGGTTCGCCGGAATTGGAAACTTGGGTGGCGCCGGCGGTCTAGGCGGCGGAGGAGCTGGTGGGATCGGCGGTTTGGGAGGCGGAGGACCTATTCTTCCCGGTGGCGGAAATGGAATAGGCGGTCTAGCCGGGCATGGACTTGGCGGAGCTGGTGGAATAGGTGGTCTGGCCGGACATGGACTTGGCGGAGCTGGTGGTGTCGGAGGATCCGGCGGCGGTGCGGTGGGAAACGGCGTAGCCGGCGGCGGTCCTCCGGTCAGTGGCGTTTTTCATCCATAA

Coding sequence (CDS)

ATGATGGAGAAGGTTTTTGTAATGCTGTTGTTGGCAGCGGTTGCGGCGGCGCGTAGCGTTCCTGGTGGCGAGCAGGTGGAGGTCGTGGACGCCGTTGAAGTGAAGGCGGCGGAGTTGCCGGCGGGTGGTGGCGGCGCTTCTGTTCGTGATGAGAAGAATTTTATCTATGGCGGAGTTGGCGGCTTTGCTGGCATGGGCGGGTACGCAGGGCTGGGTATGCCGATGCTGGGTGGTGGCGCTGGGATCGGAAAATTCGGTGGAATTGGTGGGTTCGCCGGAATTGGAAACTTGGGTGGCGCCGGCGGTCTAGGCGGCGGAGGAGCTGGTGGGATCGGCGGTTTGGGAGGCGGAGGACCTATTCTTCCCGGTGGCGGAAATGGAATAGGCGGTCTAGCCGGGCATGGACTTGGCGGAGCTGGTGGAATAGGTGGTCTGGCCGGACATGGACTTGGCGGAGCTGGTGGTGTCGGAGGATCCGGCGGCGGTGCGGTGGGAAACGGCGTAGCCGGCGGCGGTCCTCCGGTCAGTGGCGTTTTTCATCCATAA

Protein sequence

MMEKVFVMLLLAAVAAARSVPGGEQVEVVDAVEVKAAELPAGGGGASVRDEKNFIYGGVGGFAGMGGYAGLGMPMLGGGAGIGKFGGIGGFAGIGNLGGAGGLGGGGAGGIGGLGGGGPILPGGGNGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGGSGGGAVGNGVAGGGPPVSGVFHP
Homology
BLAST of Lag0021010 vs. NCBI nr
Match: XP_022974868.1 (glycine-rich cell wall structural protein [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-42
Identity = 138/183 (75.41%), Postives = 146/183 (79.78%), Query Frame = 0

Query: 2   MEKVFVMLLLAAVAAARSVPGGEQVEVVDAVEVKAAELPAGGGGASVRDEKNFIYGGVGG 61
           MEK+FVML LA VAAAR+VPG EQV+ VDAVEVKAAELP  GGGA VRDEKNFIYGGVGG
Sbjct: 1   MEKLFVMLFLAVVAAARNVPGAEQVQFVDAVEVKAAELPTAGGGA-VRDEKNFIYGGVGG 60

Query: 62  FAGMGGYAGLGMPMLGGGAGIGKFGGIGGFAGIGNLGGAGGLGGGGAGGIG-------GL 121
           FAGMGGYAGLGMPMLGG AGIGKFGGIGGFAGIG+ GG GG+GGGG GG G       GL
Sbjct: 61  FAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGGGGMGGVAGHGL 120

Query: 122 GGGGPILP------GGGNGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGGSGGGAVGNGV 172
           GG G I        GG  GIGG+AGHG+GG GGIGG+ GHGLGGAGGVGGSGGG  GNG 
Sbjct: 121 GGAGGIGGLAGHGLGGAGGIGGIAGHGVGGVGGIGGIPGHGLGGAGGVGGSGGGDSGNGG 180

BLAST of Lag0021010 vs. NCBI nr
Match: XP_011652752.1 (glycine-rich protein 23 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-41
Identity = 139/192 (72.40%), Postives = 148/192 (77.08%), Query Frame = 0

Query: 2   MEKVFVMLLLAAVAAARSVPGGEQVEVVDAVEVKAAELPAGGG-GASVRDEKNFIYGGVG 61
           MEK+FVM LL AVAAAR VPGG+Q E V+AVEVKAAELP   G G +VRDEKNFIYGGVG
Sbjct: 1   MEKLFVMFLLVAVAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDAVRDEKNFIYGGVG 60

Query: 62  GFAGMGGYAGL-GMPMLGGGAGIGKFGGIGGFAGIGNLGGAGGLGGGGAG-GIGGLGGGG 121
           GFAGMGGYAGL G+PMLGG AGIGKFGGIGG AGIG+LG  GGLGGGGAG G+       
Sbjct: 61  GFAGMGGYAGLGGLPMLGGSAGIGKFGGIGGVAGIGSLGDPGGLGGGGAGPGV------- 120

Query: 122 PILPGGGNGIGGLAGHGLGGAGGIGGLAGHGLGGAGGV---------GGSGGGAVGNGVA 181
               GG +GIGGLAGHGLGGAGGIGGLAGHGLGGAGGV         GGS GG  G+G A
Sbjct: 121 ----GGASGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGTGSGIGGIGGSNGGIGGDGGA 180

BLAST of Lag0021010 vs. NCBI nr
Match: KAG6597313.1 (hypothetical protein SDJN03_10493, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-39
Identity = 133/173 (76.88%), Postives = 142/173 (82.08%), Query Frame = 0

Query: 2   MEKVFVMLLLAAVA---AARSVPGGEQVEVVDAVEVKAAELPAGGGGASVRDEKNFIYGG 61
           MEK+FVML LA VA   AAR+VPGGE+V+ VDAVEVKAAELPA GG A  RDEK FIYGG
Sbjct: 1   MEKLFVMLFLAVVAAATAARNVPGGEKVQFVDAVEVKAAELPAAGGDAG-RDEKTFIYGG 60

Query: 62  VGGFAGMGGYAGLGMPMLGGGAGIGKFGGIGGFAGIGNLGGAGGLGGGGAGGIGGLGGGG 121
           VGGFAGMGGYAGLGMPMLGG AGIGKFGGIGGFAGIG+ GG GG+GGGG GG GG+GG  
Sbjct: 61  VGGFAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGDPGGLGGMGGGGGGG-GGIGGVA 120

Query: 122 PILPGGGNGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGGSGGGAVGNGVAGG 172
               GG  GIGG+AGHGLGG GGIG + GHGLGGAGGVGGSGGG  GNG  GG
Sbjct: 121 GHGLGGAGGIGGIAGHGLGGGGGIGVIPGHGLGGAGGVGGSGGGDSGNGGTGG 171

BLAST of Lag0021010 vs. NCBI nr
Match: KAA0049179.1 (putative PE-PGRS family protein PE_PGRS46 [Cucumis melo var. makuwa] >TYK17381.1 putative PE-PGRS family protein PE_PGRS46 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-39
Identity = 132/191 (69.11%), Postives = 142/191 (74.35%), Query Frame = 0

Query: 2   MEKVFVMLLLAAVAAARSVPGGEQVEVVDAVEVKAAELPAGGG-GASVRDEKNFIYGGVG 61
           MEK+FV+ LL A+AAAR VPGG+Q E V+AVEVKAAELP   G G +VRDEKNFIYGGVG
Sbjct: 1   MEKLFVLFLLVAIAAARGVPGGDQAEFVEAVEVKAAELPRNAGRGDNVRDEKNFIYGGVG 60

Query: 62  GFAGMGGYAGL-GMPMLGGGAGIGKFGGIGGFAGIGNLGGAGGLGGGGAGGIGGLGGGGP 121
           GFAGMGGYAGL G PMLGG AGIGKFGGIGG AGIG+LG  GGLGGG             
Sbjct: 61  GFAGMGGYAGLGGFPMLGGSAGIGKFGGIGGVAGIGSLGDPGGLGGGAGA---------- 120

Query: 122 ILPGGGNGIGGLAGHGLGGAGGIGGLAGHGLGGA---------GGVGGSGGGAVGNGVAG 181
              GG +GIGGLAGHGLGGAGGIGGLAGHGLGGA         GG+GGS GG  G+G AG
Sbjct: 121 ---GGASGIGGLAGHGLGGAGGIGGLAGHGLGGAGGIGTGSGIGGIGGSNGGIGGDGGAG 178

BLAST of Lag0021010 vs. NCBI nr
Match: XP_023540607.1 (glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.2 bits (435), Expect = 4.2e-39
Identity = 139/207 (67.15%), Postives = 145/207 (70.05%), Query Frame = 0

Query: 2   MEKVFVMLLLAAVAAARSVPGGEQVEVVDAVEVKAAELPAGGGGASVRDEKNFIYGGVGG 61
           MEK+F ML LA VAAAR+VPG EQ + VDAVEVKAAELP  GG A  RDEK FIYGGVGG
Sbjct: 1   MEKLFAMLFLAVVAAARNVPGAEQGQFVDAVEVKAAELPTAGGDAG-RDEKTFIYGGVGG 60

Query: 62  FAGMGGYAGLGMPMLGGGAGIGKFGGIGGFAGIGNLGGAGGLGGGGAGGIGGLGGGGPIL 121
           FAGMGGYAGLGMPMLGG AGIGKFGGIGGFAGIGN GG GG+GGGG GG GG+GG     
Sbjct: 61  FAGMGGYAGLGMPMLGGSAGIGKFGGIGGFAGIGNPGGLGGMGGGGGGGGGGIGGVAGHG 120

Query: 122 PGGGNGIGGLAGHGLGGAGGIGGLA--------------GHGLGGAGGVGGSGGGAVGNG 181
            GG  GIGGLAGHGLGGAGGIGG+A              GHGLGGA GVGGSGGG  GNG
Sbjct: 121 LGGAGGIGGLAGHGLGGAGGIGGIAGHGLDGGGGIGGIPGHGLGGADGVGGSGGGDSGNG 180

BLAST of Lag0021010 vs. ExPASy Swiss-Prot
Match: O48848 (Glycine-rich protein 23 OS=Arabidopsis thaliana OX=3702 GN=GRP23 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 71/123 (57.72%), Postives = 79/123 (64.23%), Query Frame = 0

Query: 57  GGVGGFAGMGGYAGL-GMPMLGGGAGIGKFGGIGGFAGI---GNLGGAGGLGGG---GAG 116
           GG+GG  G+GG  GL G   LGGG G+G  GG+GG +G+   G LGG  GLGGG   G G
Sbjct: 67  GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGSGLGGGGGLGGGSGLGGGGGLGGG 126

Query: 117 GIGGLGGGGPILPGGGNGIGGLAGHGLGGAGGIGGLAGHGLGGAGGVGGSGGGAVGNGVA 173
           G GGLGGGG +  G G G GG AG GLGG GGIGG  G G GG GG GG  GG  G G+ 
Sbjct: 127 GGGGLGGGGGLGGGAGGGYGGGAGGGLGGGGGIGGGGGFGGGGGGGFGGGAGGGFGKGIG 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022974868.12.4e-4275.41glycine-rich cell wall structural protein [Cucurbita maxima][more]
XP_011652752.12.6e-4172.40glycine-rich protein 23 [Cucumis sativus][more]
KAG6597313.11.4e-3976.88hypothetical protein SDJN03_10493, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0049179.13.2e-3969.11putative PE-PGRS family protein PE_PGRS46 [Cucumis melo var. makuwa] >TYK17381.1... [more]
XP_023540607.14.2e-3967.15glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
O488481.1e-0557.72Glycine-rich protein 23 OS=Arabidopsis thaliana OX=3702 GN=GRP23 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463GLYCINE-RICH PROTEINcoord: 5..133
NoneNo IPR availablePANTHERPTHR34463:SF12GLYCINE-RICH PROTEINcoord: 5..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0021010.1Lag0021010.1mRNA