Lag0020955 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020955
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Locationchr7: 3391552 .. 3392383 (+)
RNA-Seq ExpressionLag0020955
SyntenyLag0020955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGGGATGAACTCGTTGATAAATCTAACTCTGAGGAGGGAGCAACACTTCAGCCCAAACCCTGTGTCAATTGCAGCAAGATTGGAAACACCTGTGTTTATTGGAGTGAACCCCAACTCATGGCTTTTTCGAGCAGAACATTACTTAGAAATTCATCAGCTTGCGGAATGGGAAAATATTATTGCGGCAAATATGTTGTGGACTAGTCTTGCTGGTCACATAACTAGAAAAGAACCAAATCGTGGGCGGATTTTAAAGCTAGAATGTTCTGGCATTTTATATCGTCACAGGAAGGTAGTTTGTGTGCAAGATTCTTGGCAATAAAACAAGAAGATATAATGGCCGAATATATCAAGAAGATTGAGGTTTATTCAGCCCCTGTGACTGTTTATTCAGCCCCTGTGTCGGAGTTGTCAGAAATAGTTTAGAAAATACTTTTCTAAACAAATTGATGTCGGCCATTAGGGCAACCGTCTTGAGTCGACACCCTATTGGGCTAATGGAGATTATCATAGAAGCCCTGCTAATCATGGATTGAGACGTGGTGATTCAGTTGGTCGTTGATATGATGGGCCAAGGCTTAATTATGGAAGCTATTAAGATGGGCCTAACAAGTTCGGGTAAGGCAAGTCTATCGAAAGCCAGGAAGGCTGGTACGAAACCTGAAGACCCTTCCCCCTTGCTTGGCATAACCTTACCAAAAAAGGAAGGAACGAGAAAAAAGAAATTCAACTCTCCAAAGTTGACTGCCATTGAATTCCTAGCTAAGAGCGAAAAATACAGTGAAAGGCAAATGAGTCTACAAGGTTGCGACTGTCTCCCTACCTGA

mRNA sequence

ATGATAGGGATGAACTCGTTGATAAATCTAACTCTGAGGAGGGAGCAACACTTCAGCCCAAACCCTGTGTCAATTGCAGCAAGATTGGAAACACCTGTGTTTATTGGAGTGAACCCCAACTCATGGCTTTTTCGAGCAGAACATTACTTAGAAATTCATCAGCTTGCGGAATGGGAAAATATTATTGCGGCAAATATGTTGTGGACTAGTCTTGCTGGTCACATAACTAGAAAAGAACCAAATCGTGGGCGGATTTTAAAGCTAGAATGTTCTGGCATTTTATATCGTCACAGGAAGTTGGTCGTTGATATGATGGGCCAAGGCTTAATTATGGAAGCTATTAAGATGGGCCTAACAAGTTCGGGTAAGGCAAGTCTATCGAAAGCCAGGAAGGCTGGTACGAAACCTGAAGACCCTTCCCCCTTGCTTGGCATAACCTTACCAAAAAAGGAAGGAACGAGAAAAAAGAAATTCAACTCTCCAAAGTTGACTGCCATTGAATTCCTAGCTAAGAGCGAAAAATACAGTGAAAGGCAAATGAGTCTACAAGGTTGCGACTGTCTCCCTACCTGA

Coding sequence (CDS)

ATGATAGGGATGAACTCGTTGATAAATCTAACTCTGAGGAGGGAGCAACACTTCAGCCCAAACCCTGTGTCAATTGCAGCAAGATTGGAAACACCTGTGTTTATTGGAGTGAACCCCAACTCATGGCTTTTTCGAGCAGAACATTACTTAGAAATTCATCAGCTTGCGGAATGGGAAAATATTATTGCGGCAAATATGTTGTGGACTAGTCTTGCTGGTCACATAACTAGAAAAGAACCAAATCGTGGGCGGATTTTAAAGCTAGAATGTTCTGGCATTTTATATCGTCACAGGAAGTTGGTCGTTGATATGATGGGCCAAGGCTTAATTATGGAAGCTATTAAGATGGGCCTAACAAGTTCGGGTAAGGCAAGTCTATCGAAAGCCAGGAAGGCTGGTACGAAACCTGAAGACCCTTCCCCCTTGCTTGGCATAACCTTACCAAAAAAGGAAGGAACGAGAAAAAAGAAATTCAACTCTCCAAAGTTGACTGCCATTGAATTCCTAGCTAAGAGCGAAAAATACAGTGAAAGGCAAATGAGTCTACAAGGTTGCGACTGTCTCCCTACCTGA

Protein sequence

MIGMNSLINLTLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRILKLECSGILYRHRKLVVDMMGQGLIMEAIKMGLTSSGKASLSKARKAGTKPEDPSPLLGITLPKKEGTRKKKFNSPKLTAIEFLAKSEKYSERQMSLQGCDCLPT
Homology
[Close]
BLAST of Lag0020955 vs. NCBI nr
Match: KAA0056478.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK29049.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-04
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0 

Query: 28  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL 87
           ++E PVF G +PNSWLFRAE Y +IH+L++ E ++ + + +   A H  R +  R + L
Sbjct: 126 KVEIPVFAGEDPNSWLFRAERYFQIHKLSDSEKMLVSTISFDGPALHWYRSQEEREKFL 184

[Close]
BLAST of Lag0020955 vs. NCBI nr
Match: TYK01280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 28  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRILK 87
           +LE PVF G NP SW++RAEHY EI++LA+ E +  A + + S A +  R   NR +++ 
Sbjct: 85  KLEMPVFNGENPESWIYRAEHYFEINKLADEEKVKVAVVSFGSDALNRFRWSNNRKKMMS 144

Query: 88  LE-CSGILYRHRK----LVVDMMGQGLIMEAIKMGLTSSGKASL 127
            E     ++ H K      +  M + ++++A  +GL ++ +A +
Sbjct: 145 WEDLKRRMFEHFKAPGEAPLPEMSESVLIDAFIIGLETNLQAEV 188

[Close]
BLAST of Lag0020955 vs. NCBI nr
Match: XP_038891356.1 (uncharacterized protein LOC120080793 isoform X1 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 28  RLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAA 65
           RLE P+F G NP SW++RAEHYLEIH+L++ E +  A
Sbjct: 77  RLEIPIFAGENPESWVYRAEHYLEIHELSDQEKVKVA 113

[Close]
BLAST of Lag0020955 vs. NCBI nr
Match: KAA0047244.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-04
Identity = 23/55 (41.82%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 32 PVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTSLAGHITRKEPNRGRIL 87
          PVF+G +P+SWLFRAE Y +IH+L++ E ++ + + +  LA H  R +  R + L
Sbjct: 2  PVFVGEDPDSWLFRAERYFQIHKLSDSEKMLVSTISFDGLALHWYRSQEEREKFL 56

[Close]
BLAST of Lag0020955 vs. NCBI nr
Match: KAA0062868.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-04
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 11  TLRREQHFSPNPVSIAARLETPVFIGVNPNSWLFRAEHYLEIHQLAEWENIIAANMLWTS 70
           T + E   + N  S   ++E PVFIG +P SWLFRAE Y +IH+L E E ++ + + +  
Sbjct: 102 TKKNEPDENSNDRSKFKKVEMPVFIGEDPESWLFRAERYFQIHKLTESEKMLVSTICFDG 161

Query: 71  LAGHITRKEPNRGRIL 87
            A +  R +  R + +
Sbjct: 162 PALNWYRAQEEREKFV 177

The following BLAST results are available for this feature:
BLAST of Lag0020955 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056478.13.5e-0440.68transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK29049.1 t... [more]
TYK01280.14.6e-0432.69retrotransposon protein [Cucumis melo var. makuwa][more]
XP_038891356.14.6e-0459.46uncharacterized protein LOC120080793 isoform X1 [Benincasa hispida][more]
KAA0047244.16.0e-0441.82transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
KAA0062868.16.0e-0435.53Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lag0020955 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020955.1Lag0020955.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity