Lag0020927 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0020927
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ATP synthase subunit delta', mitochondrial-like
Location	chr7: 3215573 .. 3215911 (+)
RNA-Seq Expression	Lag0020927
Synteny	Lag0020927

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATAATTCCAGCTACAACTGGGCAAATGGGTGTTCTTCCTGGTCATGTAGCTACAATCGCAGAGTTGAAGCCAGGAGTTCTATCAGTGCACGAAGGGAGCGACACCAAAAAGTACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCATACGCTGACATAATCGCCGTCGAAGCTGTGCCTGTAGACCAAATCGACGCCGGCCAAGTACAGAAGGGTCTTGCCGAATTCACCCAGAAGTTGAACTCTGCCTCTACAGACTTGGAGAAAGCCGAAGCCCAAATCGGAGTCGACGTGCACAGTGCCCTGAATGCTGCCCTTACAGGATAG

mRNA sequence

ATGGTAATAATTCCAGCTACAACTGGGCAAATGGGTGTTCTTCCTGGTCATGTAGCTACAATCGCAGAGTTGAAGCCAGGAGTTCTATCAGTGCACGAAGGGAGCGACACCAAAAAGTACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCATACGCTGACATAATCGCCGTCGAAGCTGTGCCTGTAGACCAAATCGACGCCGGCCAAGTACAGAAGGGTCTTGCCGAATTCACCCAGAAGTTGAACTCTGCCTCTACAGACTTGGAGAAAGCCGAAGCCCAAATCGGAGTCGACGTGCACAGTGCCCTGAATGCTGCCCTTACAGGATAG

Coding sequence (CDS)

ATGGTAATAATTCCAGCTACAACTGGGCAAATGGGTGTTCTTCCTGGTCATGTAGCTACAATCGCAGAGTTGAAGCCAGGAGTTCTATCAGTGCACGAAGGGAGCGACACCAAAAAGTACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCATACGCTGACATAATCGCCGTCGAAGCTGTGCCTGTAGACCAAATCGACGCCGGCCAAGTACAGAAGGGTCTTGCCGAATTCACCCAGAAGTTGAACTCTGCCTCTACAGACTTGGAGAAAGCCGAAGCCCAAATCGGAGTCGACGTGCACAGTGCCCTGAATGCTGCCCTTACAGGATAG

Protein sequence

MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG

Homology

[Close]

BLAST of Lag0020927 vs. NCBI nr
Match: KAG7028721.1 (hypothetical protein SDJN02_09902, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 60
           MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV
Sbjct: 123 MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 182

Query: 61  EAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           EAVPVDQID  QVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG
Sbjct: 183 EAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 234

[Close]

BLAST of Lag0020927 vs. NCBI nr
Match: XP_023540281.1 (ATP synthase subunit delta', mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 60
           MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV
Sbjct: 89  MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 148

Query: 61  EAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           EAVPVDQID  QVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG
Sbjct: 149 EAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Lag0020927 vs. NCBI nr
Match: XP_022974765.1 (ATP synthase subunit delta', mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 60
           MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV
Sbjct: 89  MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 148

Query: 61  EAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           EAVPVDQID  QVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG
Sbjct: 149 EAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Lag0020927 vs. NCBI nr
Match: XP_022936123.1 (ATP synthase subunit delta', mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 60
           MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV
Sbjct: 89  MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 148

Query: 61  EAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           EAVPVDQID  QVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG
Sbjct: 149 EAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Lag0020927 vs. NCBI nr
Match: KAG6597252.1 (hypothetical protein SDJN03_10432, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 60
           MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV
Sbjct: 89  MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 148

Query: 61  EAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           EAVPVDQID  QVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG
Sbjct: 149 EAVPVDQIDPDQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Lag0020927 vs. ExPASy Swiss-Prot
Match: Q40089 (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 4.9e-49
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 60
           MVIIPATTGQMGVLPGHVATIAELKPGV+SVHEG+D  KYFVS GFAFIH NS+ADIIAV
Sbjct: 89  MVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVSKYFVSGGFAFIHANSFADIIAV 148

Query: 61  EAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           EAVP+D+IDA  VQKGLAEFTQKLN+ASTD+EKAEAQIGVDVHSALNAALTG
Sbjct: 149 EAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Lag0020927 vs. ExPASy Swiss-Prot
Match: Q96252 (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-45
Identity = 92/112 (82.14%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAV 60
           MVIIPA+TGQMGVLPGHV TIAELKPG++SVHEG+D KKYF+SSGFAF+H NS ADIIAV
Sbjct: 92  MVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADIIAV 151

Query: 61  EAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           EAVP+D ID  QVQKGLAEF QKL SA+TDLEKAEAQIGV+VHSA+NAAL+G
Sbjct: 152 EAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAINAALSG 203

[Close]

BLAST of Lag0020927 vs. ExPASy Swiss-Prot
Match: Q41000 (ATP synthase subunit delta', mitochondrial OS=Pisum sativum OX=3888 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-44
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   VIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVE 61
           VIIPATTG+MGVLPGHVATIAELKPGVL+V EG+DT KYFVSSGF FIH NS ADIIAVE
Sbjct: 87  VIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFVSSGFRFIHANSVADIIAVE 146

Query: 62  AVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAALTG 113
           AVPV+Q+D   VQKGL EFTQKLNSA+TDLEK EAQIG+DV SALN+ALTG
Sbjct: 147 AVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDVDSALNSALTG 197

[Close]

BLAST of Lag0020927 vs. ExPASy Swiss-Prot
Match: Q55F42 (ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=atp5f1d PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 1   MVIIPATTGQMGVLPGHVATIAELKPGVLSV-HEGSDTKKYFVSSGFAFIHGNSYADIIA 60
           +V +P   G  GV   HV  IAELKPGV+ + HE  D +K+F+S GFAF++ ++   I  
Sbjct: 56  LVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVNPDASCYINT 115

Query: 61  VEAVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSAL 107
           +EAVP+DQ+DA +V+ GLA +TQ  N A  +  KA A IG++ +  +
Sbjct: 116 IEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGLETYQQM 162

[Close]

BLAST of Lag0020927 vs. ExPASy Swiss-Prot
Match: Q757N0 (ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=ATP16 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-15
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 2   VIIPATTGQMGVLPGHVATIAELKPGVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVE 61
           V +P  TGQ+G+L  HV  + +L PGV+ V EGS++KK+FVS GFA +  +S   I +VE
Sbjct: 50  VNLPVKTGQIGILANHVPIVEQLVPGVVEVLEGSESKKFFVSGGFATVQPDSTLSITSVE 109

Query: 62  AVPVDQIDAGQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNAAL 111
           A P+D   A  V+  LAE  QK   A+     AEA I ++V  AL AAL
Sbjct: 110 AFPLDSFSAENVRALLAE-AQKNAGAADSRVAAEASIQIEVLEALQAAL 157

The following BLAST results are available for this feature:

BLAST of Lag0020927 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028721.1	3.8e-51	98.21	hypothetical protein SDJN02_09902, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023540281.1	3.8e-51	98.21	ATP synthase subunit delta', mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_022974765.1	3.8e-51	98.21	ATP synthase subunit delta', mitochondrial-like [Cucurbita maxima]	[more]
XP_022936123.1	3.8e-51	98.21	ATP synthase subunit delta', mitochondrial-like [Cucurbita moschata]	[more]
KAG6597252.1	3.8e-51	98.21	hypothetical protein SDJN03_10432, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0020927 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40089	4.9e-49	88.39	ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=1	[more]
Q96252	1.5e-45	82.14	ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q41000	4.7e-44	82.88	ATP synthase subunit delta', mitochondrial OS=Pisum sativum OX=3888 PE=3 SV=1	[more]
Q55F42	1.5e-18	43.93	ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum OX=44689 G...	[more]
Q757N0	1.6e-15	45.87	ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	GENE3D	1.20.5.440		coord: 69..111 e-value: 8.2E-9 score: 37.2
None	No IPR available	PANTHER	PTHR13822:SF17	SUBFAMILY NOT NAMED	coord: 1..112
IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	PFAM	PF02823	ATP-synt_DE_N	coord: 1..53 e-value: 1.4E-13 score: 50.5
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	GENE3D	2.60.15.10		coord: 1..68 e-value: 1.4E-21 score: 78.3
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	SUPERFAMILY	51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain	coord: 1..63
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 1..112
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	CDD	cd12152	F1-ATPase_delta	coord: 1..105 e-value: 2.90483E-31 score: 105.286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0020927.1	Lag0020927.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism