Lag0020866 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020866
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglycine-rich protein A3
Locationchr7: 2694165 .. 2695404 (+)
RNA-Seq ExpressionLag0020866
SyntenyLag0020866
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCGGAAAGGAAAATGATAGTAATGACAAAGGCCTGTTTTCACATATGGCGGCGTTTGCTGCAGGGCACCACTATCCTCATCCTCATGGATATCCACCACCACCGCCATACGCCGGAGCCGGATATCCCCCTCCGGGAGGGTACCCCCCAGCTGGGTATCCCCCTCCCGGCGGATATCCTCCGGCTGGCTATCCTCCTCACGGTGGACACCCACATACAGCCTATCCTTATCATGGCGGATACCCTCCCGCTGGCTATCCTGGCCCCCATCATTACCATGGTATTATATCATTCTATATTTCTATTGTCCTCGAAAGTGTGTTCCGTTTAATTTTGAAAAAAAAATTAATGTTATCAAATATATGAGTGTTTAAATTCTGAATAATTTTTATACAAAATGTTTTTTAAAAAATGTATTAGTGAAAAACATTTAAATTAAAATGTATTTCAAACGGACCCTTAATGACTTTGGTACATAATAATATCTTGTTATTGATTCAATATGGGTTTCAATGCTACCCTTGGGCGCTAATGGTTAAGTTTTTGGGTAAAGAAGGAAAAAGGGACAGCCCCTCTTAGATTCTTTAATTTTTTAGAATTTAAAAATTATGTATTTAAAAAACTAGAATGTAAAATTTTACTTCATGTGAAATTGCTATACATTCAAACTCATTATCTTTTGAACCTTTTAAGTTAGAGTTCTTATTATCTTTCGAAACGGGCTCATACTCTTCTTTGTTGAATGTGGGATGGGAGATCAAAACCTCGAACCTCGTAAACGAGGGTACATACTGATTATCTCTGAGTTATGTTCACTTTGGCAAATGAACCCGTGTTATAAGCACAACACAAGACTTTCAAGAATTATTTCAAGAATCAATTAAAAAAAAAAGGTTTTGTTGCTAACTAGTTTATTAGATATCACACTCGTTTGTTTATTGGATCCTAACGGGCCTTGCCATGTAGAAAGAGCTAGGAAGCTGGCTGGTTGTTTGTTGTGACAAATTCCAACATTGGATCATCGTCATGAATTTTCGTTACAGGCCATGGACACGGACACCACGGCATGGGGCCAATGTTGGCTGGTGGAGCCGCTGCTGCAGCCGCTGCTTACGGTGCTCATCATCTAGCTCATCATGGACGCCCATATGGCTTCTTTGGTCACGGAAAATTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCAAGAAATGGAAGTGA

mRNA sequence

ATGGGAGGCGGAAAGGAAAATGATAGTAATGACAAAGGCCTGTTTTCACATATGGCGGCGTTTGCTGCAGGGCACCACTATCCTCATCCTCATGGATATCCACCACCACCGCCATACGCCGGAGCCGGATATCCCCCTCCGGGAGGGTACCCCCCAGCTGGGTATCCCCCTCCCGGCGGATATCCTCCGGCTGGCTATCCTCCTCACGGTGGACACCCACATACAGCCTATCCTTATCATGGCGGATACCCTCCCGCTGGCTATCCTGGCCCCCATCATTACCATGGCCATGGACACGGACACCACGGCATGGGGCCAATGTTGGCTGGTGGAGCCGCTGCTGCAGCCGCTGCTTACGGTGCTCATCATCTAGCTCATCATGGACGCCCATATGGCTTCTTTGGTCACGGAAAATTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCAAGAAATGGAAGTGA

Coding sequence (CDS)

ATGGGAGGCGGAAAGGAAAATGATAGTAATGACAAAGGCCTGTTTTCACATATGGCGGCGTTTGCTGCAGGGCACCACTATCCTCATCCTCATGGATATCCACCACCACCGCCATACGCCGGAGCCGGATATCCCCCTCCGGGAGGGTACCCCCCAGCTGGGTATCCCCCTCCCGGCGGATATCCTCCGGCTGGCTATCCTCCTCACGGTGGACACCCACATACAGCCTATCCTTATCATGGCGGATACCCTCCCGCTGGCTATCCTGGCCCCCATCATTACCATGGCCATGGACACGGACACCACGGCATGGGGCCAATGTTGGCTGGTGGAGCCGCTGCTGCAGCCGCTGCTTACGGTGCTCATCATCTAGCTCATCATGGACGCCCATATGGCTTCTTTGGTCACGGAAAATTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCAAGAAATGGAAGTGA

Protein sequence

MGGGKENDSNDKGLFSHMAAFAAGHHYPHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGGYPPAGYPPHGGHPHTAYPYHGGYPPAGYPGPHHYHGHGHGHHGMGPMLAGGAAAAAAAYGAHHLAHHGRPYGFFGHGKFKHGKFGKRWKHGGKFKKWK
Homology
BLAST of Lag0020866 vs. NCBI nr
Match: XP_022147022.1 (glycine-rich protein A3 [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 133/163 (81.60%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MGGGKENDSNDKGLFSHMAAFAAGHHYPHPHGY-PPPPPYAGAGYPPPGGYPPAGYPPPG 60
           MGGGKE DS+++GLFSH+ AFAAGHHYPH HGY PPPPPY GAGYPPPGGYPPAGYPPPG
Sbjct: 1   MGGGKEKDSDERGLFSHLGAFAAGHHYPHNHGYPPPPPPYPGAGYPPPGGYPPAGYPPPG 60

Query: 61  GYPPAGYPPHGGHPHTAYPYHGGYPPAGYPGPHHYHGHGHGHHGMGPMLAGGAAAAAAAY 120
           GYPPAGY PHGGHP +AYPY GGYPPAGYPGPHH+ GHG   HGMG MLAGGAAAAAAAY
Sbjct: 61  GYPPAGYHPHGGHPPSAYPYPGGYPPAGYPGPHHHPGHG---HGMGAMLAGGAAAAAAAY 120

Query: 121 GAHHLAHHGRPYGF----FGHGKFKHGKFGKRWKHGGKFKKWK 159
           GAHHL  H RP+GF    F HGKFKHGKFGKRWKHGGKF K+K
Sbjct: 121 GAHHLV-HARPFGFGHGKFKHGKFKHGKFGKRWKHGGKFMKFK 159

BLAST of Lag0020866 vs. NCBI nr
Match: XP_008438206.1 (PREDICTED: glycine-rich protein A3 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 9.9e-61
Identity = 134/162 (82.72%), Postives = 141/162 (87.04%), Query Frame = 0

Query: 1   MGGGKENDSNDKGLFSHMAAFAAGHHYPHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG 60
           MGGGKEN+  DKGLFS+MAAFAAGHHYPH HGY PPPPY GAGYPPPGGYPPA      G
Sbjct: 1   MGGGKENEDKDKGLFSNMAAFAAGHHYPHHHGY-PPPPYGGAGYPPPGGYPPA------G 60

Query: 61  YPPAGYPPHGGHPHTAYPYHGGYPPAGYPGPHHYHGHGHGH-HGMGPMLAGGAAAAAAAY 120
           YPPAGYPP+GGHPHTAYPY GGYPPAGYPGPHHY G+GHGH HG+G +LAGGAAAAAAAY
Sbjct: 61  YPPAGYPPYGGHPHTAYPYQGGYPPAGYPGPHHYPGYGHGHGHGVGGLLAGGAAAAAAAY 120

Query: 121 GAHHLAHHGRPYGFFGHGKFKHGKFGKRWKHGGK---FKKWK 159
           GAHHLA H RP+G FGHGKFKHGKFGKRWKHGGK   FKKWK
Sbjct: 121 GAHHLA-HARPFG-FGHGKFKHGKFGKRWKHGGKFGRFKKWK 153

BLAST of Lag0020866 vs. NCBI nr
Match: XP_022924320.1 (glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 132/170 (77.65%), Postives = 137/170 (80.59%), Query Frame = 0

Query: 1   MGGGKENDSNDKGLFSHMAAFAAGHHYPHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG 60
           MGGGKE +S DKGLFS MA+FAAG HY HPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG
Sbjct: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG 60

Query: 61  YPPAGYPPHGGHPHTA-----------YPYHGGYPPAGYPGPHHYHGHGHGHHGMGPMLA 120
           YPPA YPP GG+P  A           YP HG YPPAGYP PHHY GHG    GMG +LA
Sbjct: 61  YPPAAYPPPGGYPPAAYQPPGGYPPAGYPPHGAYPPAGYPAPHHYPGHGGHGLGMGGLLA 120

Query: 121 GGAAAAAAAYGAHHLAHHGRPYGFFGHGKFKHGKFGKRWKHG-GKFKKWK 159
           GGAAAAAAAYGAHHLA H RP+G FGHGKFKHGKFGKRWKHG GKFKKWK
Sbjct: 121 GGAAAAAAAYGAHHLA-HARPFG-FGHGKFKHGKFGKRWKHGVGKFKKWK 168

BLAST of Lag0020866 vs. NCBI nr
Match: XP_022980434.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 132/170 (77.65%), Postives = 137/170 (80.59%), Query Frame = 0

Query: 1   MGGGKENDSNDKGLFSHMAAFAAGHHYPHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG 60
           MGGGKE +S DKGLFS MA+FAAG HY HPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG
Sbjct: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG 60

Query: 61  YPPAGYPPHGGHPHTA-----------YPYHGGYPPAGYPGPHHYHGHGHGHHGMGPMLA 120
           YPPA YPP GG+P  A           YP HG YPPAGYP PHHY GHG    GMG +LA
Sbjct: 61  YPPAAYPPPGGYPPAAYPPPGGYPPAGYPPHGAYPPAGYPAPHHYPGHGGHGLGMGGLLA 120

Query: 121 GGAAAAAAAYGAHHLAHHGRPYGFFGHGKFKHGKFGKRWKH-GGKFKKWK 159
           GGAAAAAAAYGAHHLA H RP+G FGHGKFKHGKFGKRWKH GGKFKKWK
Sbjct: 121 GGAAAAAAAYGAHHLA-HARPFG-FGHGKFKHGKFGKRWKHGGGKFKKWK 168

BLAST of Lag0020866 vs. NCBI nr
Match: KAG6582545.1 (hypothetical protein SDJN03_22547, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 132/170 (77.65%), Postives = 137/170 (80.59%), Query Frame = 0

Query: 1   MGGGKENDSNDKGLFSHMAAFAAGHHYPHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG 60
           MGGGKE +S DKGLFS MA+FAAG HY HPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG
Sbjct: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAGYPPPGGYPPAGYPPPGG 60

Query: 61  YPPAGYPPHGGHPHTA-----------YPYHGGYPPAGYPGPHHYHGHGHGHHGMGPMLA 120
           YPPA YPP GG+P  A           YP HG YPPAGYP PHHY GHG    GMG +LA
Sbjct: 61  YPPAAYPPPGGYPPAAYPPPGGYPPAGYPPHGAYPPAGYPAPHHYPGHGGHGLGMGGLLA 120

Query: 121 GGAAAAAAAYGAHHLAHHGRPYGFFGHGKFKHGKFGKRWKHG-GKFKKWK 159
           GGAAAAAAAYGAHHLA H RP+G FGHGKFKHGKFGKRWKHG GKFKKWK
Sbjct: 121 GGAAAAAAAYGAHHLA-HARPFG-FGHGKFKHGKFGKRWKHGVGKFKKWK 168

BLAST of Lag0020866 vs. ExPASy Swiss-Prot
Match: P37705 (Glycine-rich protein A3 OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.7e-19
Identity = 79/153 (51.63%), Postives = 89/153 (58.17%), Query Frame = 0

Query: 1   MGGGKENDSNDKGLFSHMA-AFAAGHHYPHPHGYPPPP-PYAGAGYPPP-GGYPPAGYPP 60
           MGGG  ++  DKGLFS++A   A G HYP P  YPP    Y   GYPP  GGYPP GYPP
Sbjct: 1   MGGGDGHNDQDKGLFSNLAGGLAGGGHYP-PGQYPPAAGGYPPQGYPPAGGGYPPQGYPP 60

Query: 61  P-GGYPPAGYPPHGGHPHTAYPYHGGYPPAGYPGPHHYHG----HGHGHHGMGPMLAGGA 120
             GGYPP GYPP G          GGYPP GYP   H+ G    H  GH G+  M+AGG 
Sbjct: 61  AGGGYPPQGYPPAG----------GGYPPQGYPPAGHHSGSSAPHHSGHGGVAGMVAGGR 120

Query: 121 AAAAAAYGAHHLAHHGRPYGFFGHGKFKHGKFG 146
           AAAAAAYG HH+      +G  GHG + HG  G
Sbjct: 121 AAAAAAYGVHHMTQGHGSHG--GHGGYAHGAMG 140

BLAST of Lag0020866 vs. ExPASy Swiss-Prot
Match: O16005 (Rhodopsin OS=Sepia officinalis OX=6610 GN=RHO PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 36/62 (58.06%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 33  YPPPPPYAGAGYPPPGGYPPAGYPPP---GGYPPAGYPPHGGHPHTAYPYHGGYPPAGYP 92
           YPP        YPP GGYPP GYPPP   GGYPP GYPP    P   YP   GYPP GYP
Sbjct: 387 YPPQ-----GAYPPQGGYPPQGYPPPPAQGGYPPQGYPP----PPQGYPPAQGYPPQGYP 439

BLAST of Lag0020866 vs. ExPASy Swiss-Prot
Match: P24639 (Annexin A7 OS=Dictyostelium discoideum OX=44689 GN=nxnA PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04
Identity = 37/66 (56.06%), Postives = 38/66 (57.58%), Query Frame = 0

Query: 27  YPHPHGYPPPPPY-AGAGYPPPGGYPP-AGYPPPGGYPP-AGYPPHGGHPHTAYPYHGGY 86
           YP   GYPP   Y    GYPP  GYPP  GYPP  GYPP  GYPP  G+P   YP   GY
Sbjct: 70  YPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQGYPPQQGY 129

Query: 87  PPAGYP 90
           PP G P
Sbjct: 130 PPVGVP 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147022.12.0e-6181.60glycine-rich protein A3 [Momordica charantia][more]
XP_008438206.19.9e-6182.72PREDICTED: glycine-rich protein A3 [Cucumis melo][more]
XP_022924320.11.7e-5777.65glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich p... [more]
XP_022980434.11.7e-5777.65glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich pro... [more]
KAG6582545.11.7e-5777.65hypothetical protein SDJN03_22547, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
P377059.7e-1951.63Glycine-rich protein A3 OS=Daucus carota OX=4039 PE=2 SV=1[more]
O160052.7e-0558.06Rhodopsin OS=Sepia officinalis OX=6610 GN=RHO PE=2 SV=1[more]
P246394.0e-0456.06Annexin A7 OS=Dictyostelium discoideum OX=44689 GN=nxnA PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31248DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_5G04290)-RELATEDcoord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020866.1Lag0020866.1mRNA