Lag0020685 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0020685
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr7: 1346710 .. 1347168 (-)
RNA-Seq Expression	Lag0020685
Synteny	Lag0020685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTCTGTTATAAAGATGGAAGGCAAGCCAGTAAACCCACGCCACGTGATTGTACTTTTCACAGTTGACGACGCTACGCTTTCTTCTTCTTTCTTCGTTCATCTTCCTTCTTCGTCAGATTCCATGACTGATCACAGCAACATCATGGCGCCGCTGCTCATCGTCATTGTCGATCGACCAAAAACAGATTCATCCAGCAACAGCTGCTGCCGAGGGAAATGGCAAAGTCGGCGCGAAATCCGGACATCGCAATCGGAGACAGCTAGCGCTAACCTGTTTCGTCAGACAATGCCGATCCCACCACCTCTTATTAATTCGCCCAATCGACCATCAGAGAAGTCAGATCGGCACGAATTTGCTGATCTGAATCGGCGTCGCCATCAAATCAATCAATCACGCCCATTTCTCTGGCTTTCTATTCGGCGCGCGATTGGATCTTTCCTACTGATATCCTAG

mRNA sequence

ATGTGCTCTGTTATAAAGATGGAAGGCAAGCCAGTAAACCCACGCCACGTGATTGTACTTTTCACAGTTGACGACGCTACGCTTTCTTCTTCTTTCTTCGTTCATCTTCCTTCTTCGTCAGATTCCATGACTGATCACAGCAACATCATGGCGCCGCTGCTCATCGTCATTGTCGATCGACCAAAAACAGATTCATCCAGCAACAGCTGCTGCCGAGGGAAATGGCAAAGTCGGCGCGAAATCCGGACATCGCAATCGGAGACAGCTAGCGCTAACCTGTTTCGTCAGACAATGCCGATCCCACCACCTCTTATTAATTCGCCCAATCGACCATCAGAGAAGTCAGATCGGCACGAATTTGCTGATCTGAATCGGCGTCGCCATCAAATCAATCAATCACGCCCATTTCTCTGGCTTTCTATTCGGCGCGCGATTGGATCTTTCCTACTGATATCCTAG

Coding sequence (CDS)

ATGTGCTCTGTTATAAAGATGGAAGGCAAGCCAGTAAACCCACGCCACGTGATTGTACTTTTCACAGTTGACGACGCTACGCTTTCTTCTTCTTTCTTCGTTCATCTTCCTTCTTCGTCAGATTCCATGACTGATCACAGCAACATCATGGCGCCGCTGCTCATCGTCATTGTCGATCGACCAAAAACAGATTCATCCAGCAACAGCTGCTGCCGAGGGAAATGGCAAAGTCGGCGCGAAATCCGGACATCGCAATCGGAGACAGCTAGCGCTAACCTGTTTCGTCAGACAATGCCGATCCCACCACCTCTTATTAATTCGCCCAATCGACCATCAGAGAAGTCAGATCGGCACGAATTTGCTGATCTGAATCGGCGTCGCCATCAAATCAATCAATCACGCCCATTTCTCTGGCTTTCTATTCGGCGCGCGATTGGATCTTTCCTACTGATATCCTAG

Protein sequence

MCSVIKMEGKPVNPRHVIVLFTVDDATLSSSFFVHLPSSSDSMTDHSNIMAPLLIVIVDRPKTDSSSNSCCRGKWQSRREIRTSQSETASANLFRQTMPIPPPLINSPNRPSEKSDRHEFADLNRRRHQINQSRPFLWLSIRRAIGSFLLIS

Homology

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BLAST of Lag0020685 vs. NCBI nr
Match: KAG6582657.1 (hypothetical protein SDJN03_22659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 46/103 (44.66%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 16  HVIVLFTVDD-----ATLSSSFFVHLPSSSDSMTD-HSNIMAPLLIVIVDRPKTDSSSNS 75
           HVIVL T+DD     ++ SSS       SSDSMTD HS+I+A + IVIVD PKT+ S  S
Sbjct: 8   HVIVLLTIDDSFFFSSSSSSSSSSSSSWSSDSMTDHHSDIVASMFIVIVDPPKTECSRQS 67

Query: 76  CCR--GK--WQSRREIRTSQSETASANLFRQTMPIPPPLINSP 109
            CR  GK   +S    RT  + +           IP P+INSP
Sbjct: 68  RCRRNGKVGAKSADRNRTQLAPSCFVRFIFAVAAIPRPVINSP 110

The following BLAST results are available for this feature:

BLAST of Lag0020685 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6582657.1	1.3e-04	44.66	hypothetical protein SDJN03_22659, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0020685 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0020685.1	Lag0020685.1	mRNA