Lag0020673 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0020673
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Glycosyltransferase
Location	chr7: 1251022 .. 1253182 (-)
RNA-Seq Expression	Lag0020673
Synteny	Lag0020673

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTTTTGAATCGAATCTCGAGAAATTTGAGAGAAGGGAGAGAGAGAATTACAGAGGGGAACTCGCCGAAGAAGTCATCGTTGCTGACATCGAGCTCGAAGAGGAGAGTGAGGCATCAGAAGGAGTTGGGGATGGTGTCGGAGAAGGGATTGGAGTTGATGTGGAACAGGGCAAGGTCGGTCAGGGTGCCTGAGAGATTAGCGTGGTTGAGGTCGATCCTGTCAACGGTGAGGATGTAGGGGCCGTCGGGGGCATGGGCGCAGAAGACGCCGGAGTAGTTCCAGACATTGGGGCCATACCATTCGATGGTGAAGTTGGTCGGGTCGGCGGTGATGGCGTGTTTCCAAGCTTGGAGAGCAGTGTAGGCCTTGAGGGGCCTCGGGTTCAGGAGGAATTGCGATGGCAACGGCAGAGATGCTTGATGAGAAGGTTTCCGGCGATAGGGAGAAAAAGAGAGAGAAAGGGGAAAGATGTCTGGCGGCGGGAGGGAAGAGAGGGAGGGTGGGGAAGGAGGAGAGAGAGAAGTTTTTTTTTAATAATTATAATTATTTTTCTAATTATTATTATATTTTAATAATAATAATAATTTTTATTATTATTATATTATTATTTTAATTAAAAATCTATATTTTATTATTTTAAACTGTCACGTCAGCCCTAAAGGGACTAGGGACTTGATTGTCCGATTTTGAAAGGTAGGAACCTATTAGAAACTGACTCGAAACATGAGGGACCAAAAAGGTATTTTACCTTTTTTTTAAGTTCAAATATCATACAAAAACAAACCTAAAATTTGAAAGGACTAAACTTTATTATATAATTAATTTAAAATGATTTTTTTTTTCTTCATCCACATGCGTGAGTTGGAGTTATGATTATTATTATTTTAGAAATGTTGGCTTTATACGTAATTTTGTTTTATTCATTTTTTTTAGAATAATTTTATTTTATTTTATTTTATTAGAATTTTTTTTTATTTTATTTTTTAAATAAACGTGATAAGCACATCAACAAAATTATTATAATTTTTTAAATCTTAAAAGTATACCCTGTTTTAGAAGTTTCTTTAAAATGCAATTTTTTTTTAAAAAAAGCAATTTTTATCCAAACTTATCATCATGCTTCAATTTCATCAAATTGCACCACAAACTTAGATAGATGTAATTTTAACCTCGAACTTTAAAAAGTATTTCAATTTTGACCCTTTAATATGTTTTCGTCAAGATATCATTAAAAAGAATCTCACATGAATTTAATGAATTATAAAACATAAGTATGATATAAAGTTGATAAAATTTCAAATGAAAGGCATTAAAGTTCGATTTTTTTTTTTTTGAAAATTTTGAGTTTTGGCAATGTCATTCCATAGTTTTTTTTTTTTTTTTTTTTGAATAATGTCATTCCATAGTTAATTTGTGTATTACTCAAACTTAAATTTGTACACAAATTGTTAGATTTGTTGCAATTAGTAAGTTTATGGAGACTTTTACATTATCATTATTATTATTTAAAAATGAGTGGGTGAATTAGCAAAAATTGAATAGAAGGTAAATACTGCAACACTTGTTCAAGTTTATGTCCAATTTGATGAAATCAAAAGTTTATGATTAAGATTTATACAACTTTACAAGTTTAGGAGTCAAAATTAATTTTTTCGCTATTTTTTTTTTAATTCAATAAGATGTGGAGGTAAGAGATTTGAACCTCTAAAGTGTCTATAACGACAAATTATTTGGTACTCTCGGTACGATAATGCTCAATCTTTAAAACCGTCGGATGTAAATCTTCAAATTTGTTTGTTCCCTAATAACCGTTGGATACAAAATTAAGGTAGTTTCACAATTTCTCTTTCTTACATCCCACGGTACAAAACTATTTGCCTCATTGCATCGGGAGCACCTAACAATTTCTCTTCTATAACTTTTTGTTCCATTCCTTCGTGACCTGTTCGAATCCCTCATCGAAAAAACCCACCGATCGGTCTCATCATCAACCATTTCAGCGCCGATGCCTTCGATGTTGCTGTCGAATTCAACGTCCCCCAATACCTTTTCTTAATTCCCCTCTCCTCCATGTCTCTTCCCCTCGCCCTTCACTTGCCCAAGCTCAACCAAATTGTCACCGACAAGCTCAAAGACCACCCCGAGCCGATTTAG

mRNA sequence

ATGGAATTTTTTGAATCGAATCTCGAGAAATTTGAGAGAAGGGAGAGAGAGAATTACAGAGGGGAACTCGCCGAAGAAGTCATCGTTGCTGACATCGAGCTCGAAGAGGAGAGTGAGGCATCAGAAGGAGTTGGGGATGGTGTCGGAGAAGGGATTGGAGTTGATGTGGAACAGGGCAAGGTCGGTCAGGGGGCCGTCGGGGGCATGGGCGCAGAAGACGCCGGAGTAGTTCCAGACATTGGGGCCATACCATTCGATGGTGAAGTTGGTCGGGTCGGCGGTGATGGCGTGTTTCCAAGCTTGGAGAGCAGTGTAGGCCTTGAGGGGCCTCGGGTTCAGGAGGAATTGCGATGGCAACGGCAGAGATGCTTGATGAGAAGCGCCGATGCCTTCGATGTTGCTGTCGAATTCAACGTCCCCCAATACCTTTTCTTAATTCCCCTCTCCTCCATGTCTCTTCCCCTCGCCCTTCACTTGCCCAAGCTCAACCAAATTGTCACCGACAAGCTCAAAGACCACCCCGAGCCGATTTAG

Coding sequence (CDS)

ATGGAATTTTTTGAATCGAATCTCGAGAAATTTGAGAGAAGGGAGAGAGAGAATTACAGAGGGGAACTCGCCGAAGAAGTCATCGTTGCTGACATCGAGCTCGAAGAGGAGAGTGAGGCATCAGAAGGAGTTGGGGATGGTGTCGGAGAAGGGATTGGAGTTGATGTGGAACAGGGCAAGGTCGGTCAGGGGGCCGTCGGGGGCATGGGCGCAGAAGACGCCGGAGTAGTTCCAGACATTGGGGCCATACCATTCGATGGTGAAGTTGGTCGGGTCGGCGGTGATGGCGTGTTTCCAAGCTTGGAGAGCAGTGTAGGCCTTGAGGGGCCTCGGGTTCAGGAGGAATTGCGATGGCAACGGCAGAGATGCTTGATGAGAAGCGCCGATGCCTTCGATGTTGCTGTCGAATTCAACGTCCCCCAATACCTTTTCTTAATTCCCCTCTCCTCCATGTCTCTTCCCCTCGCCCTTCACTTGCCCAAGCTCAACCAAATTGTCACCGACAAGCTCAAAGACCACCCCGAGCCGATTTAG

Protein sequence

MEFFESNLEKFERRERENYRGELAEEVIVADIELEEESEASEGVGDGVGEGIGVDVEQGKVGQGAVGGMGAEDAGVVPDIGAIPFDGEVGRVGGDGVFPSLESSVGLEGPRVQEELRWQRQRCLMRSADAFDVAVEFNVPQYLFLIPLSSMSLPLALHLPKLNQIVTDKLKDHPEPI

Homology

[Close]

BLAST of Lag0020673 vs. NCBI nr
Match: THU52360.1 (hypothetical protein C4D60_Mb10t03190 [Musa balbisiana])

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 1   MEFFESNLEKFERRERENYRGELAEEVIVADIELEEESEASEGVGDGVGEGIG-----VD 60
           +E  E ++E+F+RR+ +   GELA E +VAD++LEE SE +E VGDG  E +      V+
Sbjct: 184 LELVEPDVEEFQRRKLKEDPGELAGEAVVADVDLEETSELAELVGDGAAEAVPGNVGVVE 243

Query: 61  VEQGKVGQGAVGG-MGAEDAGVVPDIGAIPFDGEVGRVGGDGVFPSLESSVG 107
           V+ G  G+GAV G  GA DA VV D+GA P  GEV  +G DG+ PSL+S VG
Sbjct: 244 VDAGDDGEGAVAGERGAVDAVVVADVGAYPVAGEVVGIGEDGLLPSLQSDVG 295

[Close]

BLAST of Lag0020673 vs. NCBI nr
Match: KAF7806888.1 (nuclear pore complex protein Nup107 [Senna tora])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-12
Identity = 61/139 (43.88%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 1   MEFFESNLEKFERRERENYRGELAEEVIVADIELEEESEASEGVGDGVGEGIGVDVEQGK 60
           +E  ES +E+ E RE ++  GE A E +VA++EL EE+EA EG G+G  E +GV+VE+G+
Sbjct: 166 VEGVESEVEESEGREGQDDVGEWAGEAVVAEVELVEEAEAGEGGGEGPAEAVGVEVEEGE 225

Query: 61  VGQ--------------------------GAVGGMGAEDAGVVPDIGAIPFDGEVGRVGG 113
           VG+                          G V G GAE AGV  D+G  P  GEVG VGG
Sbjct: 226 VGEEEGEVGGEGAGEAGAVEVDAGDRGEAGVVWGRGAEHAGVGADVGPGPVGGEVGGVGG 285

[Close]

BLAST of Lag0020673 vs. NCBI nr
Match: THU70574.1 (hypothetical protein C4D60_Mb08t26420 [Musa balbisiana])

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-11
Identity = 60/132 (45.45%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 1   MEFFESNLEKFERRERENYRGELAEEVIVADIELEEESEASEGVGDGVGEGIGVDVEQGK 60
           +E  E+ +E  E RE E+   E A E IVADIEL EE EA+EG G+G  E IGVDVE+G+
Sbjct: 213 LELVEAEVEVAEGREAEDDVREGAGEAIVADIELVEEGEAAEGAGEGAAEAIGVDVEEGE 272

Query: 61  VGQGA--VGGM-----------------------GAEDAGVVPDIGAIPFDGEVGRVGGD 108
           VG+ A  VG +                       GA+DAGVV D GA P  GEV  +G D
Sbjct: 273 VGKEAELVGKVASEVAVVEINAGDDSEVGVGREGGAKDAGVVADAGADPVAGEVQGIGDD 332

[Close]

BLAST of Lag0020673 vs. NCBI nr
Match: CAA7403051.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-09
Identity = 56/140 (40.00%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 1   MEFFESNLEKFERRERENYRGELAEEVIVADIELEEESEASEGVGDGVGEGIGVDVEQGK 60
           +E  ES++E+ ERRE E++ GELA E +VA IELEEE +  + V D   E + VDVEQ +
Sbjct: 214 LELVESDVEELERREAEDHPGELAGETVVAQIELEEELQILKLVRDRAAEAVRVDVEQRE 273

Query: 61  VGQGA-------------------------VGGMGAEDAGVVPDIGAIPFDGEVGRVGGD 116
           V Q A                         +   GAE AGV+ D G+ P  G++ R+G D
Sbjct: 274 VLQQAELLRKIPGDVPVVEIYAGDHGDVPVIERRGAEHAGVLADAGSDPVAGQIERIGED 333

[Close]

BLAST of Lag0020673 vs. NCBI nr
Match: CAB3464131.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-08
Identity = 56/143 (39.16%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 1   MEFFESNLEKFERRERENYRGELAEEVIVADIELEEESEASEGVGDGVGEGIGVDVEQGK 60
           +E  E  +E+ ERRE E+  GE A+E +VA++EL+EE+E +EG GD   E +GV+VEQ +
Sbjct: 35  LEVVEPEVEELERREVEHDGGERADEAVVAEVELDEEAEPAEGRGDEAAEAVGVEVEQRE 94

Query: 61  VGQ---------------------GAVGGMG-------AEDAGVVPDIGAIPFDGEVGRV 115
           VG+                     G + G G       A DAGVV D  A P  GEV  V
Sbjct: 95  VGEEAELRGEVPRDVAVVEVDAGDGELPGAGHPPRQRRAVDAGVVADPRAHPVGGEVAWV 154

[Close]

BLAST of Lag0020673 vs. ExPASy Swiss-Prot
Match: Q9AR73 (Hydroquinone glucosyltransferase OS=Rauvolfia serpentina OX=4060 GN=AS PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 129 DAFDVAVEFNVPQYLFLIPLSSMSLPLALHLPKLNQIVTDKLKDHPEPI 178
           DAFDVA+EF V  Y+F  P ++M L L  HLPKL+Q+V+ + +D PEP+
Sbjct: 119 DAFDVAIEFKVSPYIF-YPTTAMCLSLFFHLPKLDQMVSCEYRDVPEPL 166

[Close]

BLAST of Lag0020673 vs. ExPASy Swiss-Prot
Match: Q9M156 (UDP-glycosyltransferase 72B1 OS=Arabidopsis thaliana OX=3702 GN=UGT72B1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 129 DAFDVAVEFNVPQYLFLIPLSSMSLPLALHLPKLNQIVTDKLKDHPEPI 178
           DAFDVAVEF+VP Y+F  P ++  L   LHLPKL++ V+ + ++  EP+
Sbjct: 122 DAFDVAVEFHVPPYIF-YPTTANVLSFFLHLPKLDETVSCEFRELTEPL 169

The following BLAST results are available for this feature:

BLAST of Lag0020673 vs. NCBI nr


Match Name	E-value	Identity	Description
THU52360.1	1.5e-12	49.11	hypothetical protein C4D60_Mb10t03190 [Musa balbisiana]	[more]
KAF7806888.1	1.9e-12	43.88	nuclear pore complex protein Nup107 [Senna tora]	[more]
THU70574.1	2.8e-11	45.45	hypothetical protein C4D60_Mb08t26420 [Musa balbisiana]	[more]
CAA7403051.1	2.0e-09	40.00	unnamed protein product [Spirodela intermedia]	[more]
CAB3464131.1	1.7e-08	39.16	unnamed protein product [Digitaria exilis]	[more]

BLAST of Lag0020673 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AR73	3.6e-06	53.06	Hydroquinone glucosyltransferase OS=Rauvolfia serpentina OX=4060 GN=AS PE=1 SV=1	[more]
Q9M156	1.5e-04	48.98	UDP-glycosyltransferase 72B1 OS=Arabidopsis thaliana OX=3702 GN=UGT72B1 PE=1 SV=...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0020673.1	Lag0020673.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016757	glycosyltransferase activity