|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGAAACTGCGTGTTGAAAGGCCAGGGAGAAAGGGAAGATGTGGTCAAAGTGGTCACCGCCGACGGCGGAATCATGGAGCTCTACACGCCAATCACGGCCGAGTGCATAACCGGTGAATATCCAGGCCACGCCATTTTCAAAAGCCGAAGCATATTCTCGGAGCCCCTTCTCCACAAGGACGAGCTTCACGCCGGCCAGGTCTACTATCTCCTCCCGCTCAACCCCTACAAGCCCTCCGAGGTGGACACGCCCACCGTTGTATCGACGCCGTATCGCATGTCGACGTGCGAGACACAGATCGCGGCGGCGAAGAAGCGGGCGGAGGCGGAGGCGGAGGTGTTCCCCAAGTACAGTAGCACGGGTGTGTGGAAGGTGAAGCTGGTGATCAGCCCGGAACAGCTCTCCGAGATTTTGTCGCAGGACAATCGCACCGAGGAGTTGATCGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGGCGTCGGATCTGCTGCCAACTCCGACCATTCCAGCGTCGCAGGTAGTTGGAAGGGGTCCGCCCTGGATAAGCCGCAGAATGGGTTCAAAACTTGA mRNA sequence ATGGGAAACTGCGTGTTGAAAGGCCAGGGAGAAAGGGAAGATGTGGTCAAAGTGGTCACCGCCGACGGCGGAATCATGGAGCTCTACACGCCAATCACGGCCGAGTGCATAACCGGTGAATATCCAGGCCACGCCATTTTCAAAAGCCGAAGCATATTCTCGGAGCCCCTTCTCCACAAGGACGAGCTTCACGCCGGCCAGGTCTACTATCTCCTCCCGCTCAACCCCTACAAGCCCTCCGAGGTGGACACGCCCACCGTTGTATCGACGCCGTATCGCATGTCGACGTGCGAGACACAGATCGCGGCGGCGAAGAAGCGGGCGGAGGCGGAGGCGGAGGTGTTCCCCAAGTACAGTAGCACGGGTGTGTGGAAGGTGAAGCTGGTGATCAGCCCGGAACAGCTCTCCGAGATTTTGTCGCAGGACAATCGCACCGAGGAGTTGATCGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGGCGTCGGATCTGCTGCCAACTCCGACCATTCCAGCGTCGCAGGTAGTTGGAAGGGGTCCGCCCTGGATAAGCCGCAGAATGGGTTCAAAACTTGA Coding sequence (CDS) ATGGGAAACTGCGTGTTGAAAGGCCAGGGAGAAAGGGAAGATGTGGTCAAAGTGGTCACCGCCGACGGCGGAATCATGGAGCTCTACACGCCAATCACGGCCGAGTGCATAACCGGTGAATATCCAGGCCACGCCATTTTCAAAAGCCGAAGCATATTCTCGGAGCCCCTTCTCCACAAGGACGAGCTTCACGCCGGCCAGGTCTACTATCTCCTCCCGCTCAACCCCTACAAGCCCTCCGAGGTGGACACGCCCACCGTTGTATCGACGCCGTATCGCATGTCGACGTGCGAGACACAGATCGCGGCGGCGAAGAAGCGGGCGGAGGCGGAGGCGGAGGTGTTCCCCAAGTACAGTAGCACGGGTGTGTGGAAGGTGAAGCTGGTGATCAGCCCGGAACAGCTCTCCGAGATTTTGTCGCAGGACAATCGCACCGAGGAGTTGATCGAGAACGTCAGGACCGTAGCCAAGTGTGGAAACGGCGTCGGATCTGCTGCCAACTCCGACCATTCCAGCGTCGCAGGTAGTTGGAAGGGGTCCGCCCTGGATAAGCCGCAGAATGGGTTCAAAACTTGA Protein sequence MGNCVLKGQGEREDVVKVVTADGGIMELYTPITAECITGEYPGHAIFKSRSIFSEPLLHKDELHAGQVYYLLPLNPYKPSEVDTPTVVSTPYRMSTCETQIAAAKKRAEAEAEVFPKYSSTGVWKVKLVISPEQLSEILSQDNRTEELIENVRTVAKCGNGVGSAANSDHSSVAGSWKGSALDKPQNGFKT
Homology
BLAST of Lag0020574 vs. NCBI nr
Match: XP_023540170.1 (uncharacterized protein LOC111800623 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 329.7 bits (844), Expect = 1.7e-86 Identity = 170/194 (87.63%), Postives = 174/194 (89.69%), Query Frame = 0
Query: 1 MGNCVLKGQGEREDVVKVVTADGGIMELYTPITAECITGEYPGHAIFKSRSIFSEPLLHK 60
MGNCVLK GER DVVKVVT DGGIMELY PITAECITGEYPGHAIF SRSIFSEPLLHK
Sbjct: 9 MGNCVLKVAGERVDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFTSRSIFSEPLLHK 68
Query: 61 DELHAGQVYYLLPLNPYKPS---EVDTPTVVSTPYRMSTCETQIAAAKKR-AEAEAEVFP 120
DELHAGQVYYLLPLNPYKPS E D P+VVSTPYRMSTCE+Q A AKKR AE EAEVFP
Sbjct: 69 DELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEAEVFP 128
Query: 121 KYSSTGVWKVKLVISPEQLSEILSQDNRTEELIENVRTVAKCGNGVGSAANSDHSSVAGS 180
KYSSTGVWKVKLVI PEQLSEIL Q NRTEELIENVRTVAKCGNGVGSAA+SDHSSVAGS
Sbjct: 129 KYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDHSSVAGS 188
Query: 181 WKGSALDKPQNGFK 191
WKGSA+DKPQ G K
Sbjct: 189 WKGSAMDKPQYGLK 202
BLAST of Lag0020574 vs. NCBI nr
Match: KAG7028490.1 (hypothetical protein SDJN02_09671, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 328.2 bits (840), Expect = 4.8e-86 Identity = 170/194 (87.63%), Postives = 174/194 (89.69%), Query Frame = 0
Query: 1 MGNCVLKGQGEREDVVKVVTADGGIMELYTPITAECITGEYPGHAIFKSRSIFSEPLLHK 60
MGNCVLK GER DVVKVVT DGGIMELY PITAECITGEYPGHAIFKSRSIFSEPLLHK
Sbjct: 44 MGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHK 103
Query: 61 DELHAGQVYYLLPLNPYKPS---EVDTPTVVSTPYRMSTCETQIAAAKKR-AEAEAEVFP 120
DELHAGQVYYLLPLNPYKPS E D P+VVSTPYRMSTCE+Q A AKKR AE EAEVFP
Sbjct: 104 DELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEAEVFP 163
Query: 121 KYSSTGVWKVKLVISPEQLSEILSQDNRTEELIENVRTVAKCGNGVGSAANSDHSSVAGS 180
KYSSTGVWKVKLVI PEQLSEIL Q NRTEELIENVRTVAKCGNGVGSAA+SDHSSVAGS
Sbjct: 164 KYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDHSSVAGS 223
Query: 181 WKGSALDKPQNGFK 191
WKGSA+DK Q G K
Sbjct: 224 WKGSAMDKLQYGLK 237
BLAST of Lag0020574 vs. NCBI nr
Match: XP_022974256.1 (uncharacterized protein LOC111472889 [Cucurbita maxima]) HSP 1 Score: 327.8 bits (839), Expect = 6.3e-86 Identity = 170/194 (87.63%), Postives = 174/194 (89.69%), Query Frame = 0
Query: 1 MGNCVLKGQGEREDVVKVVTADGGIMELYTPITAECITGEYPGHAIFKSRSIFSEPLLHK 60
MGNCVLK GER DVVKVVT DGGIMELY PITAECITGEYPGHAIFKSRSIFSEPLLHK
Sbjct: 9 MGNCVLKVAGERVDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHK 68
Query: 61 DELHAGQVYYLLPLNPYKPS---EVDTPTVVSTPYRMSTCETQIAAAKKR-AEAEAEVFP 120
DELH GQVYYLLPLNPYKPS E D P+VVSTPYRMSTCE+Q A AKKR AEAEAEVFP
Sbjct: 69 DELHEGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEAEAEVFP 128
Query: 121 KYSSTGVWKVKLVISPEQLSEILSQDNRTEELIENVRTVAKCGNGVGSAANSDHSSVAGS 180
KYSSTGVWKVKLVI PEQLSEIL Q NRTEELIENVRTVAKCGNGVGSAA+SDHSSVAGS
Sbjct: 129 KYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDHSSVAGS 188
Query: 181 WKGSALDKPQNGFK 191
WKGSA+DK Q G K
Sbjct: 189 WKGSAMDKLQYGLK 202
BLAST of Lag0020574 vs. NCBI nr
Match: XP_022975258.1 (uncharacterized protein LOC111474379 [Cucurbita maxima]) HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85 Identity = 169/194 (87.11%), Postives = 173/194 (89.18%), Query Frame = 0
Query: 1 MGNCVLKGQGEREDVVKVVTADGGIMELYTPITAECITGEYPGHAIFKSRSIFSEPLLHK 60
MGNCVLK GER DVVKVVT DGGIMELY PITAECITGEYPGHAIFKSRSIFSEPLLHK
Sbjct: 9 MGNCVLKVAGERVDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHK 68
Query: 61 DELHAGQVYYLLPLNPYKPS---EVDTPTVVSTPYRMSTCETQIAAAKKR-AEAEAEVFP 120
DELH GQVYYLLPLNPYKPS E D P+VVSTPYRMSTCE+Q A AKKR AE EAEVFP
Sbjct: 69 DELHEGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEAEVFP 128
Query: 121 KYSSTGVWKVKLVISPEQLSEILSQDNRTEELIENVRTVAKCGNGVGSAANSDHSSVAGS 180
KYSSTGVWKVKLVI PEQLSEIL Q NRTEELIENVRTVAKCGNGVGSAA+SDHSSVAGS
Sbjct: 129 KYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDHSSVAGS 188
Query: 181 WKGSALDKPQNGFK 191
WKGSA+DK Q G K
Sbjct: 189 WKGSAMDKLQYGLK 202
BLAST of Lag0020574 vs. NCBI nr
Match: KAG6597014.1 (hypothetical protein SDJN03_10194, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 325.1 bits (832), Expect = 4.1e-85 Identity = 168/190 (88.42%), Postives = 172/190 (90.53%), Query Frame = 0
Query: 1 MGNCVLKGQGEREDVVKVVTADGGIMELYTPITAECITGEYPGHAIFKSRSIFSEPLLHK 60
MGNCVLK GER DVVKVVT DGGIMELY PITAECITGEYPGHAIFKSRSIFSEPLLHK
Sbjct: 9 MGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHK 68
Query: 61 DELHAGQVYYLLPLNPYKPS---EVDTPTVVSTPYRMSTCETQIAAAKKR-AEAEAEVFP 120
DELHAGQVYYLLPLNPYKPS E D P+VVSTPYRMSTCE+Q A AKKR AE EAEVFP
Sbjct: 69 DELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEAEVFP 128
Query: 121 KYSSTGVWKVKLVISPEQLSEILSQDNRTEELIENVRTVAKCGNGVGSAANSDHSSVAGS 180
KYSSTGVWKVKLVI PEQLSEIL Q NRTEELIENVRTVAKCGNGVGSAA+SDHSSVAGS
Sbjct: 129 KYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDHSSVAGS 188
Query: 181 WKGSALDKPQ 187
WKGSA+DK Q
Sbjct: 189 WKGSAMDKLQ 198
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023540170.1 | 1.7e-86 | 87.63 | uncharacterized protein LOC111800623 [Cucurbita pepo subsp. pepo] | [more] |
| KAG7028490.1 | 4.8e-86 | 87.63 | hypothetical protein SDJN02_09671, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_022974256.1 | 6.3e-86 | 87.63 | uncharacterized protein LOC111472889 [Cucurbita maxima] | [more] |
| XP_022975258.1 | 1.8e-85 | 87.11 | uncharacterized protein LOC111474379 [Cucurbita maxima] | [more] |
| KAG6597014.1 | 4.1e-85 | 88.42 | hypothetical protein SDJN03_10194, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR025322 | Protein of unknown function DUF4228, plant | PFAM | PF14009 | DUF4228 | coord: 1..178
e-value: 3.7E-25
score: 89.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 163..191 |
| None | No IPR available | PANTHER | PTHR33148 | PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED | coord: 1..175 |
| None | No IPR available | PANTHER | PTHR33148:SF41 | DUF4228 DOMAIN PROTEIN | coord: 1..175 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
