Lag0020154 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0020154
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	F-box domain-containing protein
Location	chr5: 48467036 .. 48469127 (+)
RNA-Seq Expression	Lag0020154
Synteny	Lag0020154

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGATTGCCAGCGGAAATTTTCCTGAAGATATTCTGTTTGTTGGATTCTCATAACCTCGCAACTGCACTTCAAGGTCAGCAACATATTATCTTTGAATTCAATTCTCGTTTCTTTCTTCAATTCTATGTAAGACGGGTCGTTTTAGCTATTCATCGATCAATTCATTGGATTTCAGCTCGAATTTTGCAATTGTTCCCTGTAGGAGTTATAAGGCTGTGCCTTTGTGATTGATGTTTTATTCAATTGACTTAGCTTTTATCAGATAATTGACAGATTCAGAAAAATTATCCTCTTGACTATTTAGTTTCTGATCCAAAGATCTGATATGGACCATATGGTATTCAGAATTCTGTTATGGATTGTCTTTTTTTTTTAAAAAAAAAAAAGAAAAAAAAAAAGAAACCTGACTTCATATTTGCGTCTTCTTAACTGACTTTACCAACGGCATGGAATGCAACATGTTGCTGGAGAAAAACCATATGTAGACGACCTTTATATATAAGTTTTATTATGATTTGCAGCCAATTGATGATGCATTCATTCTAGTTTGTGTCAAATTAAATATCGTTCTGTTCATATATATTGAACAGAAATGGAATGGGGTGATACAGCGAATCTTCACCATGAAGAAATTTAATGGGTAAAATATTTGGTAAACTAAACATTTGTTTCCTTAGATTCTTGCTCATTACTCCCCCTAATTTGAAATTTGATTATAATATTTTAAACTTTTATTTGTTTATAAATGTATCTTTAGCCAAAAAAAAGAAAAGAATTATAAAGGAATTCACATTACCATCTCTGATCCCCCCAACTCTCTCTTTTATACTTTACTGGTCTGGGTTGAAGGGATGCCTTTCCTTAATATCAGAGTTGAAGAGAAAAGTTCCTTTGATGGAATGAAACCCAGATGAAGAAGGAAGTTCAGTCTTTCTAACCCAGATGGGTTATCCCTTCGTTAAAGGGGCCTTCCCCTTCAACCTAGATAAAGAAATAAAGAGGGCAGGGCCGACCCTTTAAGGTAGTAGGTGTCAAGTAGGAAAACTAATTTGTTCATAGAGTAGAGAGACATAAGATAATGAGGAGCATCCCCTGCCTTCCCTTGTTGTTACTCTATTAAGAGGACCAACAAACTTTTGATGGGGAAGCAATTAGAAGAAGAGTTGAATTTCTAAGGGTAATATATAATATTATTGAACTGAAGGAGCAAGATGCATAGATAAATAAATAAAATGTAGGAATGAAAACTAGATTTACTCTTGAATTTCCTTCTCAACAGTTGATCCCCGCCCTCTGTTGATTTATTGCTTCAATTGACTATTAGCCATTAACACTGCAACCTGCTGCTTGAAGTTTGCAGGAAGTGGAACTCCTTGGCTTCAGACAATATCTTGTGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAGATCAAGCTGCATTTTATCACCCAGTTGGTTCAAAGTCATGGAAGGATGCATATGAGGTGCAAGATCGATGTGACCGATTTGGACTGTGAGTCATATTCTACTTCTTAACACTAAACTCTAGGAGACCTACTTCAGTACTAGACATGTCTGGTTGCAACACATCGATTAAAATTTCCTTAATTCTTCGATGGGTTATGGTTTAAGATCTTATGTACTGCAAGTTTTAAATAACATATTGGTTAGAATTTACTGATCTTGTTAATTCACATGTTTTTTTCCTGGGTTAATATTTGACTAGAAAAATCATGTTGGATAATACTAACGTTAGAGTAGAAATTTGAATCATAATTTATGATTAGAGTATACTTTTATTTGTCCTTCATATGACATAGCTACTGTAACCAGGGGCCTAAGAATAATCCGCGAAGGGAACGACTACTATCTCATTCACCAAGGTGAAATCCAAAGGCACCTAGGTTCAAGAAGACAAAAAAATGGGCAGACTAGTTTTCTTCCTTTGAGTTCAAAAAGGGAGTTCCTATCAGAAGGATTTCTCGAAGAAGACAAATCCTGCCGAGGAATTCTGGACAGGATCCTTTTCTTTATTGGAGACTTGGAAGTTGCTTCAACAGATGCAAAGCGTAGCAGGGCCCTTTGA

mRNA sequence

ATGGAGAGATTGCCAGCGGAAATTTTCCTGAAGATATTCTGTTTGTTGGATTCTCATAACCTCGCAACTGCACTTCAAGGAAGTGGAACTCCTTGGCTTCAGACAATATCTTGTGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAGATCAAGCTGCATTTTATCACCCAGTTGGTTCAAAGTCATGGAAGGATGCATATGAGGTGCAAGATCGATGTGACCGATTTGGACTCTACTGTAACCAGGGGCCTAAGAATAATCCGCGAAGGGAACGACTACTATCTCATTCACCAAGGTGAAATCCAAAGGCACCTAGGTTCAAGAAGACAAAAAAATGGGCAGACTAGTTTTCTTCCTTTGAGTTCAAAAAGGGAGTTCCTATCAGAAGGATTTCTCGAAGAAGACAAATCCTGCCGAGGAATTCTGGACAGGATCCTTTTCTTTATTGGAGACTTGGAAGTTGCTTCAACAGATGCAAAGCGTAGCAGGGCCCTTTGA

Coding sequence (CDS)

ATGGAGAGATTGCCAGCGGAAATTTTCCTGAAGATATTCTGTTTGTTGGATTCTCATAACCTCGCAACTGCACTTCAAGGAAGTGGAACTCCTTGGCTTCAGACAATATCTTGTGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAGATCAAGCTGCATTTTATCACCCAGTTGGTTCAAAGTCATGGAAGGATGCATATGAGGTGCAAGATCGATGTGACCGATTTGGACTCTACTGTAACCAGGGGCCTAAGAATAATCCGCGAAGGGAACGACTACTATCTCATTCACCAAGGTGAAATCCAAAGGCACCTAGGTTCAAGAAGACAAAAAAATGGGCAGACTAGTTTTCTTCCTTTGAGTTCAAAAAGGGAGTTCCTATCAGAAGGATTTCTCGAAGAAGACAAATCCTGCCGAGGAATTCTGGACAGGATCCTTTTCTTTATTGGAGACTTGGAAGTTGCTTCAACAGATGCAAAGCGTAGCAGGGCCCTTTGA

Protein sequence

MERLPAEIFLKIFCLLDSHNLATALQGSGTPWLQTISCGRTYSRRGGGKIKLHFITQLVQSHGRMHMRCKIDVTDLDSTVTRGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGFLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL

Homology

[Close]

BLAST of Lag0020154 vs. NCBI nr
Match: XP_008455999.1 (PREDICTED: uncharacterized protein LOC103496056 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-45
Identity = 110/168 (65.48%), Postives = 118/168 (70.24%), Query Frame = 0


Query: 1   MERLPAEIFLKIFCLLDSHNLATALQGSGTPWLQTISCGRTYS---RRGGGKIKLHFITQ 60
           ME+LP EI LKIFC LDS NLATALQ     W    S    +S   +   G+ +  F   
Sbjct: 1   MEKLPTEICLKIFCFLDSQNLATALQVC-RKWNSLASDNILWSNLFKERWGEDQAAF--- 60

Query: 61  LVQSHGRMHMRCKIDVTDLDSTVTRGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF 120
                G    +   +V D       GLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF
Sbjct: 61  -YHPSGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF 120

Query: 121 LPLSSKREFLSEGFLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 166
           LPLSSKREFLSEG LEEDKSCRGILDRILFFIGDLEVASTDAKRSR+L
Sbjct: 121 LPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRSL 163

[Close]

BLAST of Lag0020154 vs. NCBI nr
Match: XP_022140895.1 (uncharacterized protein LOC111011451 [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-45
Identity = 110/168 (65.48%), Postives = 118/168 (70.24%), Query Frame = 0


Query: 1   MERLPAEIFLKIFCLLDSHNLATALQGSGTPWLQTISCGRTYS---RRGGGKIKLHFITQ 60
           MERLPAE+ LKIFCLLDS NLATALQ     W    S    +S   +   G+    F   
Sbjct: 6   MERLPAEVCLKIFCLLDSQNLATALQVC-WKWNSLASDNLLWSSLFKERWGEDHAAFYHP 65

Query: 61  LVQSHGRMHMRCKIDVTDLDSTVTRGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF 120
           +    G    +   +V D       GLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQ +F
Sbjct: 66  I----GSKSWKDAYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQNNF 125

Query: 121 LPLSSKREFLSEGFLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 166
           LPLSSKREFLSEG LEEDKSCRGILDRILFFIGDLEVASTDAKRSR L
Sbjct: 126 LPLSSKREFLSEGILEEDKSCRGILDRILFFIGDLEVASTDAKRSRVL 168

[Close]

BLAST of Lag0020154 vs. NCBI nr
Match: XP_023553429.1 (uncharacterized protein LOC111810852 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-45
Identity = 111/168 (66.07%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   MERLPAEIFLKIFCLLDSHNLATALQGSGTPWLQTISCGRTYS---RRGGGKIKLHFITQ 60
           MERLPAEI LKIFCLLDS +LATALQ     W    S    +S   +   G+    F   
Sbjct: 6   MERLPAEICLKIFCLLDSQSLATALQVC-RKWNSLASDNILWSNLFKERWGEDHAAFYHP 65

Query: 61  LVQSHGRMHMRCKIDVTDLDSTVTRGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF 120
           +    G    +   +V D       GLRIIREG+DYYLIHQGEIQRHLGSRRQKNGQTSF
Sbjct: 66  V----GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSF 125

Query: 121 LPLSSKREFLSEGFLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 166
           LPLSSKRE LSEG LEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 LPLSSKRELLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of Lag0020154 vs. NCBI nr
Match: KAG7014689.1 (pof10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-45
Identity = 111/168 (66.07%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   MERLPAEIFLKIFCLLDSHNLATALQGSGTPWLQTISCGRTYS---RRGGGKIKLHFITQ 60
           MERLPAEI LKIFCLLDS +LATALQ     W    S    +S   +   G+    F   
Sbjct: 6   MERLPAEICLKIFCLLDSQSLATALQVC-RKWNSLASDNILWSNLFKERWGEDHAAFYHP 65

Query: 61  LVQSHGRMHMRCKIDVTDLDSTVTRGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF 120
           +    G    +   +V D       GLRIIREG+DYYLIHQGEIQRHLGSRRQKNGQTSF
Sbjct: 66  V----GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSF 125

Query: 121 LPLSSKREFLSEGFLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 166
           LPLSSKRE LSEG LEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 LPLSSKRELLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of Lag0020154 vs. NCBI nr
Match: XP_004146236.1 (F-box/WD repeat-containing protein pof1 [Cucumis sativus] >XP_011651306.1 F-box/WD repeat-containing protein pof1 [Cucumis sativus] >KGN57647.1 hypothetical protein Csa_009595 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 7.9e-45
Identity = 109/168 (64.88%), Postives = 117/168 (69.64%), Query Frame = 0


Query: 1   MERLPAEIFLKIFCLLDSHNLATALQGSGTPWLQTISCGRTYS---RRGGGKIKLHFITQ 60
           ME+LP EI  KIFC LDS NLATALQ     W    S    +S   +   G+    F   
Sbjct: 1   MEKLPTEICFKIFCFLDSQNLATALQVC-RKWNSLASDNILWSNLFKERWGEDHAAFYHP 60

Query: 61  LVQSHGRMHMRCKIDVTDLDSTVTRGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF 120
           +    G    +   +V D       GLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF
Sbjct: 61  I----GSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSF 120

Query: 121 LPLSSKREFLSEGFLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 166
           LPLSSKREFLSEG LEEDKSCRGILDRILFFIGDLEVASTDAKRSR+L
Sbjct: 121 LPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRSL 163

The following BLAST results are available for this feature:

BLAST of Lag0020154 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455999.1	2.1e-45	65.48	PREDICTED: uncharacterized protein LOC103496056 [Cucumis melo]	[more]
XP_022140895.1	2.7e-45	65.48	uncharacterized protein LOC111011451 [Momordica charantia]	[more]
XP_023553429.1	6.1e-45	66.07	uncharacterized protein LOC111810852 [Cucurbita pepo subsp. pepo]	[more]
KAG7014689.1	6.1e-45	66.07	pof10 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004146236.1	7.9e-45	64.88	F-box/WD repeat-containing protein pof1 [Cucumis sativus] >XP_011651306.1 F-box/...	[more]

BLAST of Lag0020154 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 1..26
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 81..164
None	No IPR available	PANTHER	PTHR12874:SF19	OS02G0686500 PROTEIN	coord: 1..26 coord: 81..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0020154.1	Lag0020154.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex