Lag0020141 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020141
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein PLASTID TRANSCRIPTIONALLY ACTIVE 7
Locationchr5: 48388488 .. 48390334 (+)
RNA-Seq ExpressionLag0020141
SyntenyLag0020141
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTCCAATTCCGACACTGTCCTTTGCTTCACCTGTAAGCACTCTCTCTGTTTGGTTTTCCAGCCAATCTTGTCGGAAACTTGAATATCAACATTCTGTTTGTTGACTCTTTCGCTCTTTTTATCTTCACCTTCTCTTTCAAAATACATCAAATTTTGCTCATCTTGGCGTTTTCTTTCAGTTGTTGCAGAGGATTGAGGTGCGGGCGGGAATCTCTCATGGCTTTAACTTTCCTCCGCGATTACAGGTTAAGATTTGAGAGATTCTTTCAGTAACAAAGTTAGCTATTTTCTCTTCGGCCCTCATTGTTCATGATTTCTTGTTTAAGTTTTCAGGTGGTCGCCAGAAAGCAGCGTAGTGGTGAAGGTGGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGGTACGGTGAACGTGCTTATTCTCTCACTTAATCTCTCCCTCGCATTTCTATCTCTTATCTCATTTGTTTCCCATTTTATGTCACTCTCCTAATCTGTAATTGTATTCCTTTTTTGTTTGCCTTTACACGAGGGAAGTTCTTCACTTCTTCTGAAATAAAATTTGATGTTTGAGACTATATACTCGTTTGAAACTGTACGAGTCGAACTCACAATTAAAAAAAAAAAAAAAACCAAATGGAAGCATTGCAACGTGCTGCTAAGTTGACCTAAATTAATTGCCTTTGTTCTCTCCTCTACCCGGGCATCTAAGTTGTTCTCCTTTTATGATTTTTGAATATATGTTTTCTTCTGTTAAAAGAAAACAGAGAGAGATTCTGTTCATGCCTCCTTGTGGTCAGTGTTTCTTTGCTATTAATATTGTTTGTCAACTTACAACAGAGATGTGAAAACTTTAGGAAAATGAAATTTGGGTTATTTGGTGCTTTTTGCAGAAAATCTTGGAGATGTTATGCTTGTTATAGCTTTTGTTCTTCTGATTCATGCAAGCCAATATATGGTGTTTCATTGATAGATATCTAAATGTGGATGTATTAGAAATGATTCTGTTTTCCAGTCCTTCAAACTTTGGTGATTAATGATGATTAGGACACAAGCACCATAGGTTGGCTAGTGGTCAAGGGTCAAGTTAAAAACAGTAAAGAGACCTTGGGGGGGGGGGGGGGGGGTTATGGGTTCAAATCCCATGTGACCATCTACATTGGATATTCAAATCCTATGAATTTCTAAGTAACCACTTATGTAGATCAGACAGTTGTCTAGTTGAAATTAGGTGAGATGTGTAGATTGACACAGATACTTCTAAGAAAAATGATGATATGGACTACATACTTGTAGGATTATGTTGAACGAAGGCTTTTGTGGATTTTTAATGCTTACGATTATTAGGATGCAAACTGTGTACTTTGCTTTGGATGGAAGCCTGAAATCTTTCTAATACAGAGCAACTTGGCTGAGAATTAGTCAGGATCATTTATCATCATTGTGACAGAGTTCTTTATGTCATTCTCATCTTTGTTGAAACTTTCAATTTCATTCCTTATTCAGACGAAGAAGGATAACATGTCGCACTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTTAAAGAACAGGGGAAGCTTATAACAATGGACATCGAAAGACTGTTATTATCAGAGGACAACCGTTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTGGAGAGCAACCGTGATGAATATGGGGGCTCCAAGAAAGCTATTCTTCACGTTCTTAGCAACCGAGTGAATGATGCAGGGTTTTATCGGCCAGATGCATATGCAGAAGACGACCCATTTAAACCCGGACCTCATTATCTGAAAGAAGAATTTACTTAA

mRNA sequence

ATGACTACTCCAATTCCGACACTGTCCTTTGCTTCACCTTTGTTGCAGAGGATTGAGGTGCGGGCGGGAATCTCTCATGGCTTTAACTTTCCTCCGCGATTACAGGTGGTCGCCAGAAAGCAGCGTAGTGGTGAAGGTGGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATAACATGTCGCACTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTTAAAGAACAGGGGAAGCTTATAACAATGGACATCGAAAGACTGTTATTATCAGAGGACAACCGTTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTGGAGAGCAACCGTGATGAATATGGGGGCTCCAAGAAAGCTATTCTTCACGTTCTTAGCAACCGAGTGAATGATGCAGGGTTTTATCGGCCAGATGCATATGCAGAAGACGACCCATTTAAACCCGGACCTCATTATCTGAAAGAAGAATTTACTTAA

Coding sequence (CDS)

ATGACTACTCCAATTCCGACACTGTCCTTTGCTTCACCTTTGTTGCAGAGGATTGAGGTGCGGGCGGGAATCTCTCATGGCTTTAACTTTCCTCCGCGATTACAGGTGGTCGCCAGAAAGCAGCGTAGTGGTGAAGGTGGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATAACATGTCGCACTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTTAAAGAACAGGGGAAGCTTATAACAATGGACATCGAAAGACTGTTATTATCAGAGGACAACCGTTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTGGAGAGCAACCGTGATGAATATGGGGGCTCCAAGAAAGCTATTCTTCACGTTCTTAGCAACCGAGTGAATGATGCAGGGTTTTATCGGCCAGATGCATATGCAGAAGACGACCCATTTAAACCCGGACCTCATTATCTGAAAGAAGAATTTACTTAA

Protein sequence

MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT
Homology
[Close]
BLAST of Lag0020141 vs. NCBI nr
Match: KAG7014690.1 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.5 bits (807), Expect = 2.8e-82
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKK 60
           MTTPIPTLSFASPL QRI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKK
Sbjct: 1   MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKK 60

Query: 61  DNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN 120
           D+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVE+N
Sbjct: 61  DDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENN 120

Query: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT 169
           RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Sbjct: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of Lag0020141 vs. NCBI nr
Match: XP_022984516.1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKK 60
           MT+PIPTLSFASPL QRI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKK
Sbjct: 1   MTSPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKK 60

Query: 61  DNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN 120
           D MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVE+N
Sbjct: 61  DEMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENN 120

Query: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT 169
           RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Sbjct: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of Lag0020141 vs. NCBI nr
Match: XP_023553427.1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKK 60
           MTTPIPTLSFASPL QRI+ RAGISHGFNFPPRLQ+ ARKQR GEG GRRVWRRRKLTKK
Sbjct: 1   MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQMAARKQRDGEGVGRRVWRRRKLTKK 60

Query: 61  DNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN 120
           D MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAK+YVE+N
Sbjct: 61  DEMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKDYVENN 120

Query: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT 169
           RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Sbjct: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of Lag0020141 vs. NCBI nr
Match: XP_022923077.1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 4.1e-81
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKK 60
           MTTPIPTLSFASPL QRI+ RAG+SHGFNFP RLQV ARKQR GEG GRRVWRRRKLTKK
Sbjct: 1   MTTPIPTLSFASPLFQRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKK 60

Query: 61  DNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN 120
           D+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVE+N
Sbjct: 61  DDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENN 120

Query: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT 169
           RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Sbjct: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of Lag0020141 vs. NCBI nr
Match: KAG6576638.1 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MTTPIPTLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKK 60
           MTTPIPTLSFASP   RI+ RAGISHGFNFPPRLQV ARKQR GEG GRRVWRRRKLTKK
Sbjct: 1   MTTPIPTLSFASP---RIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKK 60

Query: 61  DNMSHYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN 120
           D+MS +KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVE+N
Sbjct: 61  DDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENN 120

Query: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT 169
           RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKPGPHYLK+EFT
Sbjct: 121 RDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165

[Close]
BLAST of Lag0020141 vs. ExPASy Swiss-Prot
Match: Q8VZV9 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 OS=Arabidopsis thaliana OX=3702 GN=PTAC7 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 102/162 (62.96%), Postives = 120/162 (74.07%), Query Frame = 0 

Query: 7   TLSFASPLLQRIEVRAGISHGFNFPPRLQVVARKQRSGEGGGRRVWRRRKLTKKDNMSHY 66
           T S  S +L  I+ R+G         + QV    QR  +  GRRVWRRR LTKKD+M  Y
Sbjct: 5   TCSSPSSILPIIDTRSG---NLRCTFQSQVSCGIQR--DDNGRRVWRRRTLTKKDDMLRY 64

Query: 67  KMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGG 126
           KM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGG
Sbjct: 65  KMQRVPFVEEQVRKIREVGKVMTMDIEQLLLREDNRFEFVNSVAAEATEYVDKNRDEYGG 124

Query: 127 SKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT 169
           SKKAI HVLSNRVND GF RP+AY E DP+KPGP YL E +T
Sbjct: 125 SKKAIFHVLSNRVNDLGFDRPEAYVEADPYKPGPGYLLEYYT 161

The following BLAST results are available for this feature:
BLAST of Lag0020141 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014690.12.8e-8292.86Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucurbita argyrosperma subsp. argyro... [more]
XP_022984516.11.1e-8192.26protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita maxima][more]
XP_023553427.11.8e-8191.67protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022923077.14.1e-8191.67protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita moschata][more]
KAG6576638.11.3e-7991.67Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7, partial [Cucurbita argyrosperma subs... [more]
BLAST of Lag0020141 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VZV91.1e-4762.96Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 OS=Arabidopsis thaliana OX=3702 GN=PT... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038958Protein plastid transcriptionally active 7PANTHERPTHR37257PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 7coord: 20..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020141.1Lag0020141.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042793 plastid transcription
cellular_component GO:0000427 plastid-encoded plastid RNA polymerase complex
molecular_function GO:0003723 RNA binding