Lag0020094 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0020094
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionarabinogalactan peptide 22-like
Locationchr5: 48029491 .. 48029808 (-)
RNA-Seq ExpressionLag0020094
SyntenyLag0020094
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTTTCAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCAGCTCCCACTAGTGATGGTTAGTTCTCTTTTCTTTCTGGTTTTTTTCTGTTTGTTTCTTGAGAAATTTGCTGGGAAAATGACTGGAAACCCAAAAAAGGCTTTGGAATGAACTCTTCTCTTCAAATTCCAGGTTCTAAGCAGCACCAATTCAATTGGATCTCCTTGAACTCAAAATGGGTTTTGGGAAATTTGGCTCCTTGTTTGAATTGA

mRNA sequence

ATGGCTGTTTTCAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCAGCTCCCACTAGTGATGGTTCTAAGCAGCACCAATTCAATTGGATCTCCTTGAACTCAAAATGGGTTTTGGGAAATTTGGCTCCTTGTTTGAATTGA

Coding sequence (CDS)

ATGGCTGTTTTCAGGGCTTGTTTTGGAATCTATGCTGTGATTATTGCTATCTTTTGTGTTGTGATTTTGCCTGTATCTGCAGCTGAACAATCCTCTTCTCCAGCTCCAGCTCCCACTAGTGATGGTTCTAAGCAGCACCAATTCAATTGGATCTCCTTGAACTCAAAATGGGTTTTGGGAAATTTGGCTCCTTGTTTGAATTGA

Protein sequence

MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDGSKQHQFNWISLNSKWVLGNLAPCLN
Homology
[Close]
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 9.2e-08
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDGS 44
          MAV RACFGIYAVIIAIF VV+LPVS AE +SSPAPAPTSDG+
Sbjct: 1  MAVLRACFGIYAVIIAIFYVVMLPVSRAEHASSPAPAPTSDGT 43

[Close]
BLAST of Lag0020094 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MAVFRACFGIY-AVIIAIFCVVILPVSAAEQSSSPAPAPTSDGS 44
          MAV +ACFGIY AVIIA+F VV LPVSAAE SSSPAPAPTSDG+
Sbjct: 1  MAVLKACFGIYAAVIIAVFYVVTLPVSAAEFSSSPAPAPTSDGT 44

[Close]
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 1  MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSSPAPAPTSDGS 44
          MAV RACFGIYA IIAI  V+ILPVS AE SSSPAPAP+SDG+
Sbjct: 1  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGT 43

[Close]
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 1  MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDGS 44
          MA  RACFG+YAVIIAIF VV+LPVS AE +SS  PAPAPTSDG+
Sbjct: 21 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGT 65

[Close]
BLAST of Lag0020094 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 1  MAVFRACFGIYAVIIAIFCVVILPVSAAEQSSS--PAPAPTSDGS 44
          MA  RACFG+YAVIIAIF VV+LPVS AE +SS  PAPAPTSDG+
Sbjct: 26 MAALRACFGLYAVIIAIFYVVMLPVSRAEHASSPAPAPAPTSDGT 70

The following BLAST results are available for this feature:
BLAST of Lag0020094 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945187.19.2e-0883.72arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala... [more]
XP_038898060.12.9e-0681.82arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac... [more]
XP_022140891.13.8e-0679.07arabinogalactan peptide 22-like [Momordica charantia][more]
XP_022968217.11.5e-0575.56arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima][more]
XP_022968216.11.5e-0575.56arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima][more]
BLAST of Lag0020094 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0020094.1Lag0020094.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane