Lag0020081 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0020081
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF3143 domain-containing protein
Location	chr5: 47908902 .. 47910989 (+)
RNA-Seq Expression	Lag0020081
Synteny	Lag0020081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTAACAATGTTTTCCCATCTCCCACTTCAAATCATCCCGAAATTTCTTCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACACAACCCCATCTCTCAATCCTTGAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAAGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGTTGAACAAGCTTCCAGAGAAGAAGAAGCCCTTGTACTCTCACAGCTTGCCTTGCGTCGAGGCTTGGTTAAAGAGCTTAGGATTTTACCAAAGTAAAGAGGACCGAGCCGTGTGGTTCATCGAGAAGCCTGAATGGCACGCCCAGCTCTCCCTTGATGTCACTGACCTCTATATAAGGTTCGCAATTGGGCACCCTTTTGTGATTTTATGATAAGGATTTTGTGTTTCTCAATTGGGTTTTGGTTATTTATCGTTTAATTGCGTTTTCTGATTAGGGTTTTTCGTGAATTGAATTGGGGATGAATCTTTCAATGTTGCTTGGCAGTTGACAGCTTGCATTCTAATGATGAAACAAACTTTAGTTTTAGAATTTTGTTGGAAGTTTCTTTTCCTATGACTTCTCTTTTGGTTCTTTCACTTGTGTGAGATAGCAATGGAGCTGAATTCAGGCAAGCATCCATATGATAACTGCTGGCTGTAGGTTGTTTAAGTGATTCTTATTTTTTGTATTAAATCTCCATGGAGAAAAGAATAATGATGCCTGGCAGTTGTCTTTATTGAAACCATGGTTAAGATTGAGCTGGGATGATGGGCAGTGCTCTATTTTTTAGCCTCTGGACTGGTCATAACATAGAGGTGGTTTTGTAAATGTTTGAAGCAGGATATTGAGCATGTAGATTTTTTGAGGTACTGAGGATACAATGTAAATGTTGAGAAAGAGGGAGAGAGTATGCAATGCGCAAACTGCGAAGGTTGTTTGCAACTTTGAAATGAAACCATATATATTTCAGTGTTCAGCGGTCTCTATAGAAGTGTGAACATATTGAAGCTGCAATAGAACATTACACATTCTAGCAAATGAAGGACTTTAGTTTAGTTCCTCTGTTAAATCCAGTTCAATTCGTCCTTGTGGATTAGATTTCTTTGCACGGCCTAGCTTAGACTCTTTTCCACGTACCAGTAAATTTCCCCAACAGATGACCCATTTCATACTGTAGATTCTTAGGAGAGAATGATGAATGTGTCAAACAAGGGAGCTGAGGGCGAATCACAATCCGTGGTTTTGCTTTTTGTGGCTACAGATTGCAGAAAAGAGCCAGGGGGGAAAATTGTATGGCCTAGCTGATACTGTTGTTGTGCAAAACTTTATTGGCTTTTAAGTTTTCTTGGCTGCTAGTTAACACCTTGTATTGCATCAAAATGTTTAAAACAGGGATGATAACATCCGTAACTTTTTGGGACTGTGAGTAGAAGAAAGGCTAGCTGGTGTGTTTCAATCATGGTTTTTTAGTTTGATAATCTGTTATCTGCCATTGCCCCCATCCCCTCACTCACTTGTGCACGCACATGTATACAGTATACACACAAAAATGGAAACACGAACAAAAAATGTCGGTCTCGTTTGATAACCATTTGGTTTTTGAAAATTAAGCCTACAAACACTATTTTCACCCATAAGTTTCTTTGTATTGTTATATATCTTCTTCCCATGTTTTCAAAAACCAACTCAAGTTTTGAAAACCAAAAAAAGTAGTTTTCAATAACTTGTTTTTGTTTTTGGAATTTGGCTGGGAATGCAGATGTAACCTCAACAAAGATGAAAACCATTCTTAAGAAATTTGGAGAAAACAAGCTTAATTTTCAAAAGCCAAAAACAAAAAACCAAATGGTTATCAAACGAGACCGTCATTTCTGTTGTTGGTTTTATGGTGAGAAGTTCAGTTACTGGTTTTAAATTTAATAGTTACACTATGCATGTCTGTTTTGCAGATATCTAAAGAGTGGACCAGGAAACCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATCGAGAATGCTGTACTTGGAGGACCTTGA

mRNA sequence

ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTAACAATGTTTTCCCATCTCCCACTTCAAATCATCCCGAAATTTCTTCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACACAACCCCATCTCTCAATCCTTGAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAAGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGTTGAACAAGCTTCCAGAGAAGAAGAAGCCCTTGTACTCTCACAGCTTGCCTTGCGTCGAGGCTTGGTTAAAGAGCTTAGGATTTTACCAAAGTAAAGAGGACCGAGCCGTGTGGTTCATCGAGAAGCCTGAATGGCACGCCCAGCTCTCCCTTGATGTCACTGACCTCTATATAAGATATCTAAAGAGTGGACCAGGAAACCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATCGAGAATGCTGTACTTGGAGGACCTTGA

Coding sequence (CDS)

ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTAACAATGTTTTCCCATCTCCCACTTCAAATCATCCCGAAATTTCTTCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACACAACCCCATCTCTCAATCCTTGAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAAGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGTTGAACAAGCTTCCAGAGAAGAAGAAGCCCTTGTACTCTCACAGCTTGCCTTGCGTCGAGGCTTGGTTAAAGAGCTTAGGATTTTACCAAAGTAAAGAGGACCGAGCCGTGTGGTTCATCGAGAAGCCTGAATGGCACGCCCAGCTCTCCCTTGATGTCACTGACCTCTATATAAGATATCTAAAGAGTGGACCAGGAAACCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATCGAGAATGCTGTACTTGGAGGACCTTGA

Protein sequence

MSITFAFQSLCNNVFPSPTSNHPEISSIWRPISTKLPQLHNPISQSLRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCVEAWLKSLGFYQSKEDRAVWFIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP

Homology

[Close]

BLAST of Lag0020081 vs. NCBI nr
Match: KAG6576682.1 (hypothetical protein SDJN03_24256, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014732.1 hypothetical protein SDJN02_22361 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.9 bits (829), Expect = 7.8e-85
Identity = 157/164 (95.73%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MSITFAFQSLCNNVFPSPTSNHPEISSIWRPISTKLPQLHNPISQSLRKSLSIVSSKSSE 60
           MSITFAFQSLC NVFPSP SNHPEISSIWRPISTKLPQL NPISQSLRKSLSIVSSKSSE
Sbjct: 1   MSITFAFQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSLRKSLSIVSSKSSE 60

Query: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCVEAWLKSLGFYQSKEDRAVWFIEKPEWHAQL 120
           AEELSAPEDEWLNKLPEKKKPLYSHSLPC+EAWLK+LGFYQS EDRAVW IEKPEWHAQL
Sbjct: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

[Close]

BLAST of Lag0020081 vs. NCBI nr
Match: XP_022922878.1 (uncharacterized protein LOC111430721 [Cucurbita moschata] >XP_023552331.1 uncharacterized protein LOC111810028 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 156/164 (95.12%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MSITFAFQSLCNNVFPSPTSNHPEISSIWRPISTKLPQLHNPISQSLRKSLSIVSSKSSE 60
           MSITFAFQSLC NVFPSP SNHPEISSIWRPISTKLPQL NPISQS RKSLSIVSSKSSE
Sbjct: 1   MSITFAFQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSE 60

Query: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCVEAWLKSLGFYQSKEDRAVWFIEKPEWHAQL 120
           AEELSAPEDEWLNKLPEKKKPLYSHSLPC+EAWLK+LGFYQS EDRAVW IEKPEWHAQL
Sbjct: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

[Close]

BLAST of Lag0020081 vs. NCBI nr
Match: XP_038880287.1 (uncharacterized protein LOC120071904 [Benincasa hispida])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MSITFAFQSLCNNVFPSPTSNHPEISSIWRPISTKLPQLHNPISQSLRKSLSIVSSKSSE 60
           MSITFAFQSLCNNVFPSPTSNH EISSIWRPISTKLPQL NPISQS RK+ +IVSSKSSE
Sbjct: 2   MSITFAFQSLCNNVFPSPTSNHSEISSIWRPISTKLPQLSNPISQSFRKTFTIVSSKSSE 61

Query: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCVEAWLKSLGFYQSKEDRAVWFIEKPEWHAQL 120
           AEELS PEDEWLNKLPEKKKPLYSHSLPCVEAWLK+LGFYQSKEDRAVW IEKPEWHAQL
Sbjct: 62  AEELSTPEDEWLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKEDRAVWLIEKPEWHAQL 121

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 122 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165

[Close]

BLAST of Lag0020081 vs. NCBI nr
Match: XP_022984153.1 (uncharacterized protein LOC111482568 [Cucurbita maxima])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 155/164 (94.51%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MSITFAFQSLCNNVFPSPTSNHPEISSIWRPISTKLPQLHNPISQSLRKSLSIVSSKSSE 60
           MSITFAFQSLC NVFPSP SNHPEISSIWRPISTKLPQL NPISQS RKSLSIVSSKSSE
Sbjct: 1   MSITFAFQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSE 60

Query: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCVEAWLKSLGFYQSKEDRAVWFIEKPEWHAQL 120
           AEELSA EDEWLNKLPEKKKPLYSHSLPC+EAWLK+LGFYQS EDRAVW IEKPEWHAQL
Sbjct: 61  AEELSASEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

[Close]

BLAST of Lag0020081 vs. NCBI nr
Match: XP_008439322.1 (PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo] >KAA0033736.1 hypothetical protein E6C27_scaffold239G002110 [Cucumis melo var. makuwa] >TYK23028.1 hypothetical protein E5676_scaffold386G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 316.2 bits (809), Expect = 1.6e-82
Identity = 153/164 (93.29%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MSITFAFQSLCNNVFPSPTSNHPEISSIWRPISTKLPQLHNPISQSLRKSLSIVSSKSSE 60
           MSITFAF SLCNNVFPSPTSNH EISSIWRPISTKLPQL NPISQ LRK+ +IVSSKSSE
Sbjct: 1   MSITFAFHSLCNNVFPSPTSNHLEISSIWRPISTKLPQLSNPISQPLRKTFTIVSSKSSE 60

Query: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCVEAWLKSLGFYQSKEDRAVWFIEKPEWHAQL 120
           AEELS+PEDEWLNKLPEKKKPLYSHSLPCVEAWLK+LGFYQSKEDRA+W IEKPEWHAQL
Sbjct: 61  AEELSSPEDEWLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKEDRAMWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

The following BLAST results are available for this feature:

BLAST of Lag0020081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576682.1	7.8e-85	95.73	hypothetical protein SDJN03_24256, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022922878.1	2.3e-84	95.12	uncharacterized protein LOC111430721 [Cucurbita moschata] >XP_023552331.1 unchar...	[more]
XP_038880287.1	1.1e-83	94.51	uncharacterized protein LOC120071904 [Benincasa hispida]	[more]
XP_022984153.1	1.9e-83	94.51	uncharacterized protein LOC111482568 [Cucurbita maxima]	[more]
XP_008439322.1	1.6e-82	93.29	PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo] >KAA0033736.1 hyp...	[more]

BLAST of Lag0020081 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021489	Protein of unknown function DUF3143	PFAM	PF11341	DUF3143	coord: 97..163 e-value: 3.4E-23 score: 81.8
IPR021489	Protein of unknown function DUF3143	PANTHER	PTHR35765	OS05G0569200 PROTEIN	coord: 43..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0020081.1	Lag0020081.1	mRNA