Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCCTCCATTCTCCCCCCGCCCGCCCCGCCCGCCACCCCAACTTCCGCGGAATCCGCACCCGTAGCGGCAAATGGGTCTCTGAGATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACCTACCCCACCCCCGAGATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCGCTCTCAAAGGCCCCGATGCCTCCCTTAATTTCCCCGACTCTCTCTCTTCCTATCACATTCCCTCTTCCACTTCCGCTTCGGATATTCGCGCCGCCGCAGCCCTCGCTGCCGCTTCCAGACTCCCCATTAACCCCGACGCCGCTGCTGCTACTGCTGCTGTTGATGCAGACACCCATCAGCTAGATGAGGCTGGCCCGTCTTCCGACGCCGCCGCGGCTTCTGCCGGAGAGTTTTTGGACGAGGAGGAGTTACTCAACATGCCGAACTTACTAGTGGACATGGCCGAGGGAATGCTCGTCAGTCCGCCGAGGATGAAGTCGCCGTCTTCCGATGACTCTCCGACCAACTCTCAGGGGGATGGATTATGGAGTTACTCCTAA
mRNA sequence
ATGGGTGGCCTCCATTCTCCCCCCGCCCGCCCCGCCCGCCACCCCAACTTCCGCGGAATCCGCACCCGTAGCGGCAAATGGGTCTCTGAGATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACCTACCCCACCCCCGAGATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCGCTCTCAAAGGCCCCGATGCCTCCCTTAATTTCCCCGACTCTCTCTCTTCCTATCACATTCCCTCTTCCACTTCCGCTTCGGATATTCGCGCCGCCGCAGCCCTCGCTGCCGCTTCCAGACTCCCCATTAACCCCGACGCCGCTGCTGCTACTGCTGCTGTTGATGCAGACACCCATCAGCTAGATGAGGCTGGCCCGTCTTCCGACGCCGCCGCGGCTTCTGCCGGAGAGTTTTTGGACGAGGAGGAGTTACTCAACATGCCGAACTTACTAGTGGACATGGCCGAGGGAATGCTCGTCAGTCCGCCGAGGATGAAGTCGCCGTCTTCCGATGACTCTCCGACCAACTCTCAGGGGGATGGATTATGGAGTTACTCCTAA
Coding sequence (CDS)
ATGGGTGGCCTCCATTCTCCCCCCGCCCGCCCCGCCCGCCACCCCAACTTCCGCGGAATCCGCACCCGTAGCGGCAAATGGGTCTCTGAGATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACCTACCCCACCCCCGAGATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCGCTCTCAAAGGCCCCGATGCCTCCCTTAATTTCCCCGACTCTCTCTCTTCCTATCACATTCCCTCTTCCACTTCCGCTTCGGATATTCGCGCCGCCGCAGCCCTCGCTGCCGCTTCCAGACTCCCCATTAACCCCGACGCCGCTGCTGCTACTGCTGCTGTTGATGCAGACACCCATCAGCTAGATGAGGCTGGCCCGTCTTCCGACGCCGCCGCGGCTTCTGCCGGAGAGTTTTTGGACGAGGAGGAGTTACTCAACATGCCGAACTTACTAGTGGACATGGCCGAGGGAATGCTCGTCAGTCCGCCGAGGATGAAGTCGCCGTCTTCCGATGACTCTCCGACCAACTCTCAGGGGGATGGATTATGGAGTTACTCCTAA
Protein sequence
MGGLHSPPARPARHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFPDSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSSDAAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSYS
Homology
BLAST of Lag0019979 vs. NCBI nr
Match:
XP_022968030.1 (ethylene-responsive transcription factor ERF027-like [Cucurbita maxima])
HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 142/178 (79.78%), Postives = 151/178 (84.83%), Query Frame = 0
Query: 13 RHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFP 72
RHP FRG+R+RSGKWVSEIR+PR+TTRIWLGTYPTP+MAAAAYDVAALALKGPDASLNFP
Sbjct: 96 RHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFP 155
Query: 73 DSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSSD--- 132
DSL SYHIPSSTS SDIRAAAALAAA+R P A A A T + AG SSD
Sbjct: 156 DSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPA----AHTRPVGGAGFSSDATA 215
Query: 133 -AAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSYS 187
AAAASAGEF+DEEELLNMPNLLVDMAEGMLVSPPR+KS SSDDSPTNS GDGLWSYS
Sbjct: 216 AAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYS 269
BLAST of Lag0019979 vs. NCBI nr
Match:
XP_023542005.1 (ethylene-responsive transcription factor ERF025 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 252.7 bits (644), Expect = 2.5e-63
Identity = 141/175 (80.57%), Postives = 154/175 (88.00%), Query Frame = 0
Query: 13 RHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFP 72
RHP FRG+R+RSGKWVSEIR+PR+TTRIWLGTYPTP+MAAAAYDVAALALKGPDASLNFP
Sbjct: 19 RHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFP 78
Query: 73 DSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSSDA-A 132
D+L SY IPSSTS SDIRAAAALAAA+R +PD A A A A TH + +G SSDA A
Sbjct: 79 DALLSYRIPSSTSPSDIRAAAALAAAAR---HPDTAPAPA---AHTHPVGGSGFSSDATA 138
Query: 133 AASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSYS 187
AA+AGEF+DEEELLNMPNLLVDMAEGMLVSPPR+KS SSDDSPTNS GDGLWSYS
Sbjct: 139 AAAAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYS 187
BLAST of Lag0019979 vs. NCBI nr
Match:
KAG6574150.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 250.0 bits (637), Expect = 1.6e-62
Identity = 141/176 (80.11%), Postives = 153/176 (86.93%), Query Frame = 0
Query: 13 RHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFP 72
RHP FRG+R+RSGKWVSEIR+PR+TTRIWLGTYPTP+MAAAAYDVAALALKGPDASLNFP
Sbjct: 18 RHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFP 77
Query: 73 DSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSSD--A 132
D+L SY IPSSTS SDIRAAAALAAA+R +PD A A A A T + AG SSD A
Sbjct: 78 DALLSYRIPSSTSPSDIRAAAALAAAAR---HPDTAPAPAPA-AHTRPVGGAGFSSDATA 137
Query: 133 AAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSYS 187
AAA+AGEF+DEEELLNMPNLLVDMAEGMLVSPPR+KS SSDDSPTNS GDGLWSYS
Sbjct: 138 AAAAAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYS 189
BLAST of Lag0019979 vs. NCBI nr
Match:
XP_022945058.1 (ethylene-responsive transcription factor ERF027-like [Cucurbita moschata] >KAG7013204.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61
Identity = 140/176 (79.55%), Postives = 152/176 (86.36%), Query Frame = 0
Query: 13 RHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFP 72
RHP FRG+R+RSGKWVSEIR+PR+TTRIWLGTYPTP+MAAAAYDVAALALKGPDASLNFP
Sbjct: 66 RHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFP 125
Query: 73 DSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSSD--A 132
D+L SY IPSSTS SDIRAAAALAAA+R +PD A A A A T + AG SSD A
Sbjct: 126 DALLSYRIPSSTSPSDIRAAAALAAAAR---HPDTAPAPAPA-AHTRPVGGAGFSSDATA 185
Query: 133 AAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSYS 187
AAA+A EF+DEEELLNMPNLLVDMAEGMLVSPPR+KS SSDDSPTNS GDGLWSYS
Sbjct: 186 AAAAAREFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYS 237
BLAST of Lag0019979 vs. NCBI nr
Match:
TYK22276.1 (ethylene-responsive transcription factor ERF027 [Cucumis melo var. makuwa])
HSP 1 Score: 235.3 bits (599), Expect = 4.1e-58
Identity = 138/194 (71.13%), Postives = 150/194 (77.32%), Query Frame = 0
Query: 5 HSPPARPARHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKG 64
++ P P RH FRGIR+RSGKWVSEIREPRK TRIWLGTYPTPEMAAAAYDVAAL LKG
Sbjct: 9 NNSPLPPGRHRIFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALTLKG 68
Query: 65 PDASLNFPDSLSSYHIPSSTSASDIRAAAALAAASRLPIN------PDAA----AATAAV 124
P+ASLNFP SL SY IP STS SDIRAAAA+AAA+R P N P AA A T
Sbjct: 69 PNASLNFPHSLLSYPIPPSTSPSDIRAAAAIAAAARNPNNTSPQASPAAATTITATTTEY 128
Query: 125 DADTHQLDEAGPSSDAAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDD-S 184
+ T +D GPSS A +G+F+DEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDD S
Sbjct: 129 SSGTEAIDGGGPSSHATGDCSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDNS 188
Query: 185 PTNSQG-DGLWSYS 187
P +SQG DGLWSYS
Sbjct: 189 PNHSQGDDGLWSYS 202
BLAST of Lag0019979 vs. ExPASy Swiss-Prot
Match:
Q9CAN9 (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana OX=3702 GN=ERF026 PE=2 SV=1)
HSP 1 Score: 197.6 bits (501), Expect = 1.3e-49
Identity = 114/177 (64.41%), Postives = 131/177 (74.01%), Query Frame = 0
Query: 9 ARPARHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDAS 68
+R ++P +RGIR RSGKWVSEIREP+KTTR+WLGTYPTPEMAAAAYDVAALALKG D
Sbjct: 82 SRRKKNPVYRGIRCRSGKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTL 141
Query: 69 LNFPDSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSS 128
LNFPDSL SY IP S+SA+ IR AAA AAA+R AA AAV + D+
Sbjct: 142 LNFPDSLGSYPIPLSSSAAHIRCAAAAAAATR-------GAAGAAVKVGQKKEDKV---Y 201
Query: 129 DAAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDGLWSY 186
D A +S F+DEEELLNMP LL DMA+GM+V+PP M SP SDDSP NS G+ LWSY
Sbjct: 202 DTAESSTMGFVDEEELLNMPGLLADMAKGMMVAPPWMGSPPSDDSPENSDGESLWSY 248
BLAST of Lag0019979 vs. ExPASy Swiss-Prot
Match:
Q9FJ90 (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana OX=3702 GN=ERF025 PE=2 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 108/188 (57.45%), Postives = 123/188 (65.43%), Query Frame = 0
Query: 6 SPPARPA-----RHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAAL 65
SP R A +H FRGIR R+GKWVSEIREPRKTTRIWLGTYP PEMAAAAYDVAAL
Sbjct: 49 SPARRTATGLSGKHSIFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAAL 108
Query: 66 ALKGPDASLNFPDSLSSYHIPSSTSASDIRAAAALAAASRLP-INPDAAAATAAVDADTH 125
ALKGPDA LNFP +Y P S SA+DIRAAA+ AA + P D
Sbjct: 109 ALKGPDAVLNFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQPGKEE 168
Query: 126 QLDEAGPSSDAAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRM--KSPSSDDSPTNS 185
+L+E +S + EF+DEE +LNMP LL +MAEGML+SPPRM DDSP N
Sbjct: 169 ELEEVSCNSCSL-----EFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENH 228
BLAST of Lag0019979 vs. ExPASy Swiss-Prot
Match:
Q38Q39 (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana OX=3702 GN=ERF027 PE=2 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 2.5e-42
Identity = 104/178 (58.43%), Postives = 124/178 (69.66%), Query Frame = 0
Query: 13 RHPNFRGIRTRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLNFP 72
+ P +RGIR RSGKWVSEIREPRKTTRIWLGTYP EMAAAAYDVAA+ALKG +A LNFP
Sbjct: 15 KDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFP 74
Query: 73 DSLSSYHIPSSTSASDIRAAAALAAASR--LPINPDAAAATAAVDADTHQLDEAGPSSDA 132
S+ SY +P STSA+DIRAAAA AAA + + A + + E +D
Sbjct: 75 GSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKSRARECHVDNDV 134
Query: 133 AAAS--AGEFLDEEELLNMPNLLVDMAEGMLVSPPR-MKSPSSDDSPTNSQGDGLWSY 186
++S EF+DEEE+LNMPNLL +MAEGM+V+PP M S SDDSP NS + LW Y
Sbjct: 135 GSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPENSNDEDLWGY 192
BLAST of Lag0019979 vs. ExPASy Swiss-Prot
Match:
Q9SJR0 (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 GN=ERF024 PE=2 SV=1)
HSP 1 Score: 135.6 bits (340), Expect = 5.8e-31
Identity = 92/182 (50.55%), Postives = 119/182 (65.38%), Query Frame = 0
Query: 13 RHPNFRGIRTR--SGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDASLN 72
RHP +RG+R R S KWVSEIREPRK RIWLGT+ TPEMAA AYDVAALALKG A LN
Sbjct: 11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELN 70
Query: 73 FPDSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDE--AGPSS 132
FP+S+SS P+S S +DI+AAAA AAA+ AA A V A+ + A +S
Sbjct: 71 FPNSVSSLPAPTSMSPADIQAAAASAAAA------FGAARDAIVMANNNSQTSGVACMNS 130
Query: 133 DAAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQG-----DGLW 186
+ F+DE+ + +MPN+L++MAEGML+SPPR P+ D+ ++ G D LW
Sbjct: 131 SYDNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPR---PTVFDAAYDADGFPGGDDYLW 183
BLAST of Lag0019979 vs. ExPASy Swiss-Prot
Match:
P93835 (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=DREB1B PE=1 SV=2)
HSP 1 Score: 126.3 bits (316), Expect = 3.5e-28
Identity = 84/180 (46.67%), Postives = 106/180 (58.89%), Query Frame = 0
Query: 10 RPARHPNFRGIRTR-SGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDAS 69
R RHP +RG+R R SGKWVSE+REP K TRIWLGT+ T EMAA A+DVAALAL+G A
Sbjct: 41 RETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSAC 100
Query: 70 LNFPDSLSSYHIPSSTSASDIRAAAALAAASRLPINPDAAAATAAVDADTHQLDEAGPSS 129
LNF DS IP ST A DI+ AAA AA + D +D + ++
Sbjct: 101 LNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTNHGLDMEETMVEAIYTPE 160
Query: 130 DAAAASAGEFLDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTNSQGDG---LWSY 186
+ A ++DEE + MP LL +MAEGML+ PP ++ + D +GDG LWSY
Sbjct: 161 QSEGAF---YMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYD----GEGDGDVSLWSY 213
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022968030.1 | 1.1e-63 | 79.78 | ethylene-responsive transcription factor ERF027-like [Cucurbita maxima] | [more] |
XP_023542005.1 | 2.5e-63 | 80.57 | ethylene-responsive transcription factor ERF025 [Cucurbita pepo subsp. pepo] | [more] |
KAG6574150.1 | 1.6e-62 | 80.11 | Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp.... | [more] |
XP_022945058.1 | 1.4e-61 | 79.55 | ethylene-responsive transcription factor ERF027-like [Cucurbita moschata] >KAG70... | [more] |
TYK22276.1 | 4.1e-58 | 71.13 | ethylene-responsive transcription factor ERF027 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Q9CAN9 | 1.3e-49 | 64.41 | Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Q9FJ90 | 1.1e-42 | 57.45 | Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Q38Q39 | 2.5e-42 | 58.43 | Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Q9SJR0 | 5.8e-31 | 50.55 | Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 ... | [more] |
P93835 | 3.5e-28 | 46.67 | Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana OX=370... | [more] |