Lag0019957 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019957
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function (DUF1677)
Locationchr5: 46970330 .. 46970883 (+)
RNA-Seq ExpressionLag0019957
SyntenyLag0019957
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGGAGATACTAGTCCTTCCTTATATACCCATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGTCGCACTCCCAACATGGGTCCGTGAAATTCGTGAAAAGAATTCTGGGGTTCGGCCATTGAAGGAGGAGAAAGAGTTAGAGGAGGAGGGAACGAGAGAGACGGTAAAAGGGGGTTGGGAAAAGAGATCTTGGTAGAGAGAGAGGGGAGACGCCGTTTGGTGAAGAAGATGAAGGAACAAAGGAGGAAGGAAATGGGAGCGAAAGAAAATCGATAGCTGGGGAGAGAGGAAAACGCCATTGGAGGATGAAGAGAAGAGAGAGGAAAGTTTCAGTCTGAAGCTTTTCTTTTTTTTGGTGTAAAGGTGTTCGGAAATGTCTGCAACGATCATCAAAATCTGACGACGGCAGCGGGGCTGGTTGGGCAAATGGAAGTTGAATTCGCGAAATGCGAGTGTTGTGGACTGACGGAGGAGTGTCCAGAAGCTTACATCTCCGGCGGTGGGGGAAGATCCGGCGGCGGCGGGAGGAGGCTCCGGCGATAG

mRNA sequence

ATGTCAATGGAGATACTAGTCCTTCCTTATATACCCATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGTCGCACTCCCAACATGGGTCCGTGAAATTCGTGAAAAGAATTCTGGGGTTCGGCCATTGAAGGAGGAGAAAGAGTTAGAGGAGGAGGGAACGAGAGAGACGGTGTTCGGAAATGTCTGCAACGATCATCAAAATCTGACGACGGCAGCGGGGCTGGTTGGGCAAATGGAAGTTGAATTCGCGAAATGCGAGTGTTGTGGACTGACGGAGGAGTGTCCAGAAGCTTACATCTCCGGCGGTGGGGGAAGATCCGGCGGCGGCGGGAGGAGGCTCCGGCGATAG

Coding sequence (CDS)

ATGTCAATGGAGATACTAGTCCTTCCTTATATACCCATGATCATCCCCTTATCTAGCCGATGTGGGACTTTGGTCGCACTCCCAACATGGGTCCGTGAAATTCGTGAAAAGAATTCTGGGGTTCGGCCATTGAAGGAGGAGAAAGAGTTAGAGGAGGAGGGAACGAGAGAGACGGTGTTCGGAAATGTCTGCAACGATCATCAAAATCTGACGACGGCAGCGGGGCTGGTTGGGCAAATGGAAGTTGAATTCGCGAAATGCGAGTGTTGTGGACTGACGGAGGAGTGTCCAGAAGCTTACATCTCCGGCGGTGGGGGAAGATCCGGCGGCGGCGGGAGGAGGCTCCGGCGATAG

Protein sequence

MSMEILVLPYIPMIIPLSSRCGTLVALPTWVREIREKNSGVRPLKEEKELEEEGTRETVFGNVCNDHQNLTTAAGLVGQMEVEFAKCECCGLTEECPEAYISGGGGRSGGGGRRLRR
Homology
[Close]
BLAST of Lag0019957 vs. NCBI nr
Match: XP_038901315.1 (uncharacterized protein LOC120088232 [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-05
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 73  AAGLVGQMEVEFAKCECCGLTEECPEAYISG 104
           AA L+GQMEVEFAKCECCGLTEEC  AYI G
Sbjct: 14  AAVLIGQMEVEFAKCECCGLTEECTGAYIEG 44

[Close]
BLAST of Lag0019957 vs. NCBI nr
Match: KAA0053489.1 (hypothetical protein E6C27_scaffold190G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-05
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 73  AAGLVGQMEVEFAKCECCGLTEECPEAYISG 104
           AA L+GQM+VEFAKCECCGLTEEC  AYI G
Sbjct: 23  AAVLIGQMDVEFAKCECCGLTEECTGAYIEG 53

[Close]
BLAST of Lag0019957 vs. NCBI nr
Match: KGN58440.1 (hypothetical protein Csa_001716 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-05
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 73  AAGLVGQMEVEFAKCECCGLTEECPEAYISG 104
           AA L+GQM+VEFAKCECCGLTEEC  AYI G
Sbjct: 14  AAVLIGQMDVEFAKCECCGLTEECTGAYIEG 44

[Close]
BLAST of Lag0019957 vs. NCBI nr
Match: XP_022777231.1 (uncharacterized protein LOC111318623 [Durio zibethinus])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 71  TTAAGLVGQMEVEFAKCECCGLTEECPEAYI 102
           TT+A LV Q EVEFAKC+CCGLTEEC  AYI
Sbjct: 21  TTSAKLVAQSEVEFAKCDCCGLTEECTPAYI 51

[Close]
BLAST of Lag0019957 vs. NCBI nr
Match: XP_021294398.1 (uncharacterized protein LOC110424195 [Herrania umbratica])

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-04
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 72  TAAGLVGQMEVEFAKCECCGLTEECPEAYI 102
           TAA LV Q EVEFAKC+CCGLTEEC  AYI
Sbjct: 22  TAAKLVAQSEVEFAKCDCCGLTEECTPAYI 51

The following BLAST results are available for this feature:
BLAST of Lag0019957 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038901315.12.0e-0583.87uncharacterized protein LOC120088232 [Benincasa hispida][more]
KAA0053489.14.4e-0580.65hypothetical protein E6C27_scaffold190G00380 [Cucumis melo var. makuwa][more]
KGN58440.14.4e-0580.65hypothetical protein Csa_001716 [Cucumis sativus][more]
XP_022777231.12.8e-0477.42uncharacterized protein LOC111318623 [Durio zibethinus][more]
XP_021294398.14.8e-0480.00uncharacterized protein LOC110424195 [Herrania umbratica][more]
BLAST of Lag0019957 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012876Protein of unknown function DUF1677, plantPFAMPF07911DUF1677coord: 82..102
e-value: 3.1E-6
score: 27.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019957.1Lag0019957.1mRNA