Lag0019898 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019898
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 46534385 .. 46534707 (-)
RNA-Seq ExpressionLag0019898
SyntenyLag0019898
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAGCAAGAGCTTTGGCTGTCTTCTTCGCTTTGCTTCTTCTTGCTTTCAACGTTTCTGCGAGGGAACTTGTTGGGACCAACAACGTTGTGGCTCGCGCAGCTCGTATGTCTTCTCTTCCCATAATATGCCTTCTACCAATATTGTTTTAACAAATCCAATTTCACTTTTTTGTTTCCTTTTAATTTCAATAGGTGAGACCACGATGAAGACGAATGGTGTGATCGACAGGAGATTAATTGTTCGACAATTGGATACCTCTTGGAGAGGAAACTATTCTCCACCTCCTCCTCGTCCTCCTCCTCCACGCTCTTCCTAA

mRNA sequence

ATGGCTTCAGCAAGAGCTTTGGCTGTCTTCTTCGCTTTGCTTCTTCTTGCTTTCAACGTTTCTGCGAGGGAACTTGTTGGGACCAACAACGTTGTGGCTCGCGCAGCTCGTGAGACCACGATGAAGACGAATGGTGTGATCGACAGGAGATTAATTGTTCGACAATTGGATACCTCTTGGAGAGGAAACTATTCTCCACCTCCTCCTCGTCCTCCTCCTCCACGCTCTTCCTAA

Coding sequence (CDS)

ATGGCTTCAGCAAGAGCTTTGGCTGTCTTCTTCGCTTTGCTTCTTCTTGCTTTCAACGTTTCTGCGAGGGAACTTGTTGGGACCAACAACGTTGTGGCTCGCGCAGCTCGTGAGACCACGATGAAGACGAATGGTGTGATCGACAGGAGATTAATTGTTCGACAATTGGATACCTCTTGGAGAGGAAACTATTCTCCACCTCCTCCTCGTCCTCCTCCTCCACGCTCTTCCTAA

Protein sequence

MASARALAVFFALLLLAFNVSARELVGTNNVVARAARETTMKTNGVIDRRLIVRQLDTSWRGNYSPPPPRPPPPRSS
Homology
BLAST of Lag0019898 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 8.9e-15
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 9  VFFALLLLAFNVSARELVGTNNVVARAARETTMKTNGVIDRRLIVRQLDTSWRGNYSPPP 68
          VFFALLLLAFNVSARELVGT N+VAR   E T++TN  + RRLI RQLDTSW GNYSPPP
Sbjct: 14 VFFALLLLAFNVSARELVGT-NIVARTVHEMTIETN--VGRRLIARQLDTSWGGNYSPPP 73

Query: 69 PRPPPP 75
          PR PPP
Sbjct: 74 PRRPPP 76

BLAST of Lag0019898 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 2.6e-14
Identity = 52/68 (76.47%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 9  VFFALLLLAFNVSARELVGTNNVVARAARETTMKTNGVIDRRLIVRQLDTSWRGNYSPPP 68
          VFFALLLLAFNVSARELVGT N+VAR   E T++TN  + RRLI RQLDTSW GNYSPPP
Sbjct: 14 VFFALLLLAFNVSARELVGT-NIVARTVHEMTIETN--VGRRLIARQLDTSWGGNYSPPP 73

Query: 69 P--RPPPP 75
          P  RPPPP
Sbjct: 74 PRRRPPPP 78

BLAST of Lag0019898 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-10
Identity = 51/85 (60.00%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 1  MASARAL-----AVFFALLLLAFNVSARELVGTNNVVARAARETTMKTNGVI-DRRLIVR 60
          MAS  AL       F   LL+A +VSAREL G  NVV R ARE     NGVI   RLI R
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGA-NVVTRTAREMATMPNGVIGGSRLIAR 60

Query: 61 QLDTSWRGNYSPPPPR--PPPPRSS 78
          QLDT+WRG+YSPPPPR  PPPP SS
Sbjct: 61 QLDTAWRGHYSPPPPRSPPPPPHSS 84

BLAST of Lag0019898 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-10
Identity = 51/85 (60.00%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 1  MASARAL-----AVFFALLLLAFNVSARELVGTNNVVARAARETTMKTNGVI-DRRLIVR 60
          MAS  AL       F   LL+A +VSAREL G  NVV R ARE     NGVI   RLI R
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAGA-NVVTRTAREMATMPNGVIVGSRLIAR 60

Query: 61 QLDTSWRGNYSPPPPR--PPPPRSS 78
          QLDT+WRG+YSPPPPR  PPPP SS
Sbjct: 61 QLDTAWRGHYSPPPPRSPPPPPHSS 84

BLAST of Lag0019898 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_011296 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 5  RALAVFFALLLLAFNVSARELVGTNNVVARAARETTMKT--NGVIDRRLIVRQLDTSWRG 64
          + + +FF LLLLA+N+SAREL      VAR   E ++ T  N VIDRRL VRQLDTSWRG
Sbjct: 12 KKVIIFFTLLLLAYNISAREL------VARTTCEPSLTTEMNDVIDRRLFVRQLDTSWRG 71

Query: 65 NYSPPPPRPPPPRS 77
          NY PP   P PPRS
Sbjct: 72 NYFPP---PKPPRS 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600178.18.9e-1577.27hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030841.12.6e-1476.47hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6576804.16.6e-1060.00hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.16.6e-1060.00hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN57260.11.2e-0859.46hypothetical protein Csa_011296 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019898.1Lag0019898.1mRNA