Lag0019778 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019778
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease T(2)
Location	chr5: 45374827 .. 45377658 (+)
RNA-Seq Expression	Lag0019778
Synteny	Lag0019778

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACCAATGGATCATTTTGGGCTCATGAGGTTCAAATTCTTCCCTCTCCAATCTTCTTCTTCTGACATCCATCAAAATTTGATACTAATCCCAGTCTTCCTCTCTTGTTGTGATGCCCATTTTTACATGTTACACCATTGGTGTGGGAAGTATGGTATGTTTTAATTTCTTCTTCAAACCTTTCATCATTTAATTTGTTACTTTTCCTTCTTGTTTTTGAATTATTTGATGTTGTTCATGTGTCAATTCAAGAGAGTAAAATTGAGAGATTGCAATTGTTGAGAAGGGTTTAGATGTTATGTTGATAGCACTACTTCTGTGTGTTGATTGTTTGTCATAAAAGCAATGTCCTTTTGAGGGTAATATCAAAACAAAAGAGGTTAAATTACAAGTTTAGTTTCTGAACTTGTGTCTATTTGGTCTCTAAACTTTAGAGAGAGACTAATAGATCACTGAACTTTCAATTTTGTGTCAAATAGGTCTTTGAATTTAAAGAATGCATGTCTATTAAGTCTCCGAACTTTCAAATTTGTGCTTAGTAGATCCTTGAACTTTTGATTTTGTGTGTCTAATATAGGTCCTTAAATATTCAAAATTTTAAAAAATTTATTGAATTTTATAAATTGAATTTTATGTCTAATAAGATTATCTAAACTTTCAATTTCGTGTCTAGTAAGTTTGTGAAATATTTTAAAAACTGTTCAATAGGTCAACGACCTATTAGACACAAAATTGAAAATTCAAAGACCTATTGAACAAAAGATTTAAAATTTAAGGACCTACTAGATAATTTTTAAAGTTCAAAAACCAATTTGAAACAAAATTAAAAGTTGATGGACGGGATACAAAATGAAAGTTTAGGGACCTATTAGAACATTTTTAAAGTTAGACATAAATCTCAAAGTTTAATGACTAAATTTAACCAAAAAAAAATAATATATCCTTCAATGACATGACAAATTGTGAATGAAATAGAGTACACACTATTTAGTACTAAAAAATTTCTCAACATCCTATTTATACTAATAACATATAATTAAACTATCAATCTACTCAACCAAAAATAAGCTCAAACCGTCAACATATGAGCATAGTTAACTGACACAAACTTTGTTCAACCAAGAGATCCGAGGTTTGAATCTCTCACTCCATACTTCATAAAATAAGAAAAACTCAAACCATAATTCAAATTCAAACTAAGCCTATATTTATATAATATAATCTAAACTTATAATGTAACAAATAACAATCACAATCACTACTTTTTGTAACTCTTTCTGCAGAGAAGCATGGCACCTGCGCAGCTCCTGTAATCATAGGCGAATATGATTACTTCACCACAACCCTCGACCTTTTCTTAAACCACAATGTCACTGTAAGCTTTTATAAACCTCTCTAGGAACTAAGGGATATTAGCATATATGTATTATGGGAAATTGGTAGATCACATACCTGTTCCGTAAAATATTGATATAATTAAATTTATCATAATCCGTCAATATAAATCTTTGAGTTTATTGGTGATTTAACGTGGTATACATCAGAGTAGAAAGTCTCGTGTTTGAGTTCATGGTATGTCATTTTCTTCTCAATCAATATTGATTTCTACTCCAAATTTTCAAGCCTTCAAGTGAAGTCATCCACCTAAGCTTTTTGAGTTTACTGAGGATTTAGAATTAATCTGATGGGATATGGTAAATTTATATACTTTTAACACTCCCTCGGGCTTTGAAATTTGTTGATGGGTTAGAAATTTTCAATTCTATCAATATTTTAAACTTATTTGCATATATGTGGCTTATTCCATGGAGTTCTTGTTTGAACTCGTTAAAAACTAACCTTCGTAATCCTAAACACAACCTTCTTGATGAAAAATTACTCAATAAAGCTGTCACATCTTTAAACGCTAGATTAAAATCAACGTACTTTTACAATTTTTCTCTCATAAGTTTAACGGTGCAAAACTGTTAGTCTCCTAAAAGATCAGTGGAGACCTCCAAATTTATAAAATGTATGGGTTTACTGGTACTCCTCTCATTGTCAAGTTACATTTAATTACAGTAAATTCATCTTCTACATCGGTAAAATATCTATCTTATCCGATCTTTTTTTTTTTCTTTTCTCTTTCTTTTTTTTTTTACCAGAAAGCTTTGGAGGATGCTGGAATTAAAGCTTCCAATACTGAAAAGTATCCCATTGGCGATGTCAAAGATGCAGTTCAAGTTGCTTTCCATGCAAGTCCAAGGCTTACATGTGTTGAAAATGGAGTTATTCAGGAACTTCGGCTATGCTTTGACAAAGACTTTAAGGTACATTTTTTTTTGGGAAAAATACACTTTTGGTCCCTGAGGTTTGGATTAGGTTTCATTTTGGTCCCTGAGTTTTCAAACTCGACAATTTAGCCCCCGAGGTTTGGATTTCGTTTCATTTTAGTCCCTCCATCCATTTTTTCGTTAAAAACTAACGGAAAGATGACGTGGCATTATCATTTTTATTAAAAAATTATTATTTAATGTTTTAAAATAAAAATATTAAAAATATTATTAATATATATTATTTTTTTCTTCTTTCTCTCTCTTCTTTTTCTTCTTTCTTCCGTTTCTTCTACTTCTTCTTCTTCGTTGTCATCACCAGAGAGTCGTCGGACTCCACCACTGCAGCCATCATCGGACTCCACCGTCGCAGCCGTCGCCGGACTCCACCGCTCACCCATCATCCCTCATCTCTCTCTCACACACCCGTCACTCTCTCTGTGCAATCGCTCCCCGTCGCCGAACACCCAACGTCACTCGTCGCCGCACCTTGCTGAAAACTCGTGCCTCTCGTTGA

mRNA sequence

ATGAGACCAATGGATCATTTTGGGCTCATGAGGTTCAAATTCTTCCCTCTCCAATCTTCTTCTTCTGACATCCATCAAAATTTGATACTAATCCCAGTCTTCCTCTCTTGTTGTGATGCCCATTTTTACATGTTACACCATTGGTGTGGGAAGTATGAGAAGCATGGCACCTGCGCAGCTCCTGTAATCATAGGCGAATATGATTACTTCACCACAACCCTCGACCTTTTCTTAAACCACAATGTCACTAAAGCTTTGGAGGATGCTGGAATTAAAGCTTCCAATACTGAAAAGTATCCCATTGGCGATGTCAAAGATGCAGTTCAAGTTGCTTTCCATGCAAGTCCAAGGCTTACATGTGTTGAAAATGGAGTTATTCAGGAACTTCGGCTATGCTTTGACAAAGACTTTAAGAGAGTCGTCGGACTCCACCACTGCAGCCATCATCGGACTCCACCGTCGCAGCCGTCGCCGGACTCCACCGCTCACCCATCATCCCTCATCTCTCTCTCACACACCCGTCACTCTCTCTGTGCAATCGCTCCCCGTCGCCGAACACCCAACGTCACTCGTCGCCGCACCTTGCTGAAAACTCGTGCCTCTCGTTGA

Coding sequence (CDS)

ATGAGACCAATGGATCATTTTGGGCTCATGAGGTTCAAATTCTTCCCTCTCCAATCTTCTTCTTCTGACATCCATCAAAATTTGATACTAATCCCAGTCTTCCTCTCTTGTTGTGATGCCCATTTTTACATGTTACACCATTGGTGTGGGAAGTATGAGAAGCATGGCACCTGCGCAGCTCCTGTAATCATAGGCGAATATGATTACTTCACCACAACCCTCGACCTTTTCTTAAACCACAATGTCACTAAAGCTTTGGAGGATGCTGGAATTAAAGCTTCCAATACTGAAAAGTATCCCATTGGCGATGTCAAAGATGCAGTTCAAGTTGCTTTCCATGCAAGTCCAAGGCTTACATGTGTTGAAAATGGAGTTATTCAGGAACTTCGGCTATGCTTTGACAAAGACTTTAAGAGAGTCGTCGGACTCCACCACTGCAGCCATCATCGGACTCCACCGTCGCAGCCGTCGCCGGACTCCACCGCTCACCCATCATCCCTCATCTCTCTCTCACACACCCGTCACTCTCTCTGTGCAATCGCTCCCCGTCGCCGAACACCCAACGTCACTCGTCGCCGCACCTTGCTGAAAACTCGTGCCTCTCGTTGA

Protein sequence

MRPMDHFGLMRFKFFPLQSSSSDIHQNLILIPVFLSCCDAHFYMLHHWCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDAVQVAFHASPRLTCVENGVIQELRLCFDKDFKRVVGLHHCSHHRTPPSQPSPDSTAHPSSLISLSHTRHSLCAIAPRRRTPNVTRRRTLLKTRASR

Homology

[Close]

BLAST of Lag0019778 vs. NCBI nr
Match: XP_022984766.1 (ribonuclease 2-like [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-28
Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTCAAPVI+GEYDYF TTL +F  +NVTKAL DAG  ASNTEKYP+GDV DA
Sbjct: 138 WAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKALSDAGFVASNTEKYPLGDVVDA 197

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           V+ A +++P+++C + G ++EL +CFDK+F+
Sbjct: 198 VKNATNSTPKISCAKKGAVKELWICFDKNFE 228

[Close]

BLAST of Lag0019778 vs. NCBI nr
Match: XP_023551927.1 (ribonuclease 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-27
Identity = 59/93 (63.44%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTC +PVI+ +YDYF TTL LF N+NVT+ALEDA I AS+T+KY I DV +A
Sbjct: 118 WAHQYEKHGTCGSPVILHQYDYFFTTLALFFNYNVTEALEDAEIVASDTKKYSIKDVFEA 177

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFKRV 141
           V+ AF+A+P+LTC + G+I+ELRLCFDK+FK +
Sbjct: 178 VRSAFNANPKLTCGKKGIIKELRLCFDKEFKLI 210

[Close]

BLAST of Lag0019778 vs. NCBI nr
Match: XP_038876700.1 (ribonuclease 2-like [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 5.3e-27
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTCAAPVI+GEYDYF TTL +F  +NVTK L DAG  ASNTEKYPI DV  A
Sbjct: 136 WAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKVLNDAGFVASNTEKYPIEDVVAA 195

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           ++  F+++P++TC + GV++EL +CFDK F+
Sbjct: 196 IKNEFNSTPKITCAKKGVVKELWICFDKSFE 226

[Close]

BLAST of Lag0019778 vs. NCBI nr
Match: XP_023553229.1 (ribonuclease 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 7.0e-27
Identity = 56/91 (61.54%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTCAAPVI+GEYDYF TTL +F  +NVTKAL DAG  ASNTEKY +GDV DA
Sbjct: 136 WAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKALSDAGFVASNTEKYALGDVVDA 195

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           V+ A  ++P+++C + G ++EL +CFDK+F+
Sbjct: 196 VKNATDSTPKISCAKKGAVKELWICFDKNFE 226

[Close]

BLAST of Lag0019778 vs. NCBI nr
Match: XP_022922894.1 (ribonuclease 2-like [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-26
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTC +PVI+ +YDYF TTL LF N+NVT+ LEDA I AS+T+KY I DV +A
Sbjct: 132 WAHQYEKHGTCGSPVILHQYDYFFTTLALFFNYNVTEVLEDAEIVASDTKKYGIEDVFEA 191

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           V+ AF A+P+L+C +NG+I+ELRLCFDK+FK
Sbjct: 192 VRSAFKANPKLSCGKNGIIKELRLCFDKEFK 222

[Close]

BLAST of Lag0019778 vs. ExPASy Swiss-Prot
Match: P42814 (Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.8e-24
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  ++EKHGTC++PV   EY+YF TTL+L+L HNVT  L  AG  ASN+EKYP+G +  A
Sbjct: 126 WGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTA 185

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           +Q AFH +P + C +   I E+R+CF KDFK
Sbjct: 186 IQNAFHITPEVVC-KRDAIDEIRICFYKDFK 215

[Close]

BLAST of Lag0019778 vs. ExPASy Swiss-Prot
Match: P80196 (Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-07
Identity = 29/101 (28.71%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 45  LHHWCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDV 104
           L  W  ++ KHGTC+A   + ++ YF T LD     N+ + L +AGIK  N + Y +  +
Sbjct: 111 LKFWSHEWLKHGTCSA---LNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESI 170

Query: 105 KDAVQVAFHASPRLTC----VENGVIQELRLCFDKDFKRVV 142
           K A++     +P + C      N  + ++ LC D    + +
Sbjct: 171 KKAIEKGVGHTPFIECNVDSQGNHQLYQVYLCVDSSASKFI 208

[Close]

BLAST of Lag0019778 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 26/91 (28.57%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  ++EKHGTCA  V+  ++ YF   LDL    ++   L+ A I     E Y + ++++A
Sbjct: 115 WSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDG-ESYDLVNIRNA 174

Query: 108 VQVAFHASPRLTC----VENGVIQELRLCFD 135
           ++ A   +P + C      N  + ++ +C D
Sbjct: 175 IKSAIGYTPWIQCNVDQSGNSQLYQVYICVD 204

[Close]

BLAST of Lag0019778 vs. ExPASy Swiss-Prot
Match: O80325 (Ribonuclease S-7 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.8e-05
Identity = 30/115 (26.09%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFL--NHNVTKALEDAGIKASNTEKYPIGDVK 107
           W  ++ KHG+C  P I+ +  YF T +++++    NV++ L  A I+    ++ P+  ++
Sbjct: 109 WNKQWIKHGSCGYPAIMNDTHYFQTVINMYITQKQNVSEILSKAKIEPLGIQR-PLVHIE 168

Query: 108 DAVQVAF-HASPRLTCVENGVIQEL---RLCFDKDFKRVVGLHHCSHHRTPPSQP 157
           +A++ +  +  P+  C +N  + EL    LC D    +     +C H   PP  P
Sbjct: 169 NAIRNSTNNKKPKFKCQKNSGVTELVEVGLCSDGSLTQ---FRNCPH--PPPGSP 217

[Close]

BLAST of Lag0019778 vs. ExPASy TrEMBL
Match: A0A6J1J670 (Ribonuclease T(2) OS=Cucurbita maxima OX=3661 GN=LOC111482949 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTCAAPVI+GEYDYF TTL +F  +NVTKAL DAG  ASNTEKYP+GDV DA
Sbjct: 138 WAHEYEKHGTCAAPVIVGEYDYFLTTLTIFSKYNVTKALSDAGFVASNTEKYPLGDVVDA 197

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           V+ A +++P+++C + G ++EL +CFDK+F+
Sbjct: 198 VKNATNSTPKISCAKKGAVKELWICFDKNFE 228

[Close]

BLAST of Lag0019778 vs. ExPASy TrEMBL
Match: A0A6J1E4S1 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430736 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.5e-27
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTC +PVI+ +YDYF TTL LF N+NVT+ LEDA I AS+T+KY I DV +A
Sbjct: 132 WAHQYEKHGTCGSPVILHQYDYFFTTLALFFNYNVTEVLEDAEIVASDTKKYGIEDVFEA 191

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           V+ AF A+P+L+C +NG+I+ELRLCFDK+FK
Sbjct: 192 VRSAFKANPKLSCGKNGIIKELRLCFDKEFK 222

[Close]

BLAST of Lag0019778 vs. ExPASy TrEMBL
Match: A0A6J1CGP7 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111011504 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.8e-27
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTCAAPVI+GE+DYF TTL +F  +NVTK L DAG  AS+TEKY +GDV  A
Sbjct: 137 WAHEYEKHGTCAAPVIVGEFDYFLTTLTIFSKYNVTKVLNDAGFVASDTEKYALGDVVAA 196

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           VQ AF+A+P+++C + G ++EL LCFDK F+
Sbjct: 197 VQDAFNATPKISCAKKGAVKELWLCFDKTFQ 227

[Close]

BLAST of Lag0019778 vs. ExPASy TrEMBL
Match: A0A6J1EA39 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430737 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.8e-27
Identity = 55/91 (60.44%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTCAAPVI+GE+DYF TTL +F  +NVTKAL DAG  ASNTEKYP+ DV DA
Sbjct: 136 WAHEYEKHGTCAAPVIVGEFDYFLTTLTIFSKYNVTKALSDAGFVASNTEKYPLEDVVDA 195

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           V+ A +++P+++C + G ++EL +CFDK F+
Sbjct: 196 VKNATNSTPKISCAKKGAVKELWICFDKKFE 226

[Close]

BLAST of Lag0019778 vs. ExPASy TrEMBL
Match: A0A1S3CJH0 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-26
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  +YEKHGTC +PVI+ EYDYF TTL LF  +NVT+ALE+A I AS+  KYPI DV +A
Sbjct: 131 WAHQYEKHGTCGSPVILQEYDYFLTTLTLFFKYNVTEALENAEIVASDIRKYPIQDVLNA 190

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFKRVV 142
           V  AF A+P+L C++NG+I+E+ LCFDK FK ++
Sbjct: 191 VHSAFKANPKLACIKNGIIKEMYLCFDKQFKNLM 224

[Close]

BLAST of Lag0019778 vs. TAIR 10
Match: AT2G39780.1 (ribonuclease 2 )

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-25
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 48  WCGKYEKHGTCAAPVIIGEYDYFTTTLDLFLNHNVTKALEDAGIKASNTEKYPIGDVKDA 107
           W  ++EKHGTC++PV   EY+YF TTL+L+L HNVT  L  AG  ASN+EKYP+G +  A
Sbjct: 126 WGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTA 185

Query: 108 VQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           +Q AFH +P + C +   I E+R+CF KDFK
Sbjct: 186 IQNAFHITPEVVC-KRDAIDEIRICFYKDFK 215

[Close]

BLAST of Lag0019778 vs. TAIR 10
Match: AT2G39780.2 (ribonuclease 2 )

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-09
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 86  LEDAGIKASNTEKYPIGDVKDAVQVAFHASPRLTCVENGVIQELRLCFDKDFK 139
           L  AG  ASN+EKYP+G +  A+Q AFH +P + C +   I E+R+CF KDFK
Sbjct: 132 LYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFK 183

The following BLAST results are available for this feature:

BLAST of Lag0019778 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984766.1	4.8e-28	62.64	ribonuclease 2-like [Cucurbita maxima]	[more]
XP_023551927.1	2.4e-27	63.44	ribonuclease 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_038876700.1	5.3e-27	61.54	ribonuclease 2-like [Benincasa hispida]	[more]
XP_023553229.1	7.0e-27	61.54	ribonuclease 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022922894.1	1.6e-26	63.74	ribonuclease 2-like [Cucurbita moschata]	[more]

BLAST of Lag0019778 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42814	9.8e-24	53.85	Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1	[more]
P80196	2.9e-07	28.71	Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2	[more]
P80022	1.2e-05	28.57	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]
O80325	7.8e-05	26.09	Ribonuclease S-7 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1	[more]

BLAST of Lag0019778 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J670	2.3e-28	62.64	Ribonuclease T(2) OS=Cucurbita maxima OX=3661 GN=LOC111482949 PE=3 SV=1	[more]
A0A6J1E4S1	7.5e-27	63.74	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430736 PE=3 SV=1	[more]
A0A6J1CGP7	9.8e-27	61.54	Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111011504 PE=3 SV=1	[more]
A0A6J1EA39	9.8e-27	60.44	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430737 PE=3 SV=1	[more]
A0A1S3CJH0	2.2e-26	59.57	Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1	[more]

BLAST of Lag0019778 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39780.1	7.0e-25	53.85	ribonuclease 2	[more]
AT2G39780.2	1.8e-09	50.94	ribonuclease 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 37..156 e-value: 1.6E-26 score: 95.6
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 45..154
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 47..139 e-value: 1.6E-21 score: 77.3
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 46..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..166
None	No IPR available	PANTHER	PTHR11240:SF51	RIBONUCLEASE 2	coord: 46..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019778.1	Lag0019778.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding