Lag0019764 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019764
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionclassical arabinogalactan protein 1-like
Locationchr5: 45211714 .. 45212085 (-)
RNA-Seq ExpressionLag0019764
SyntenyLag0019764
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTAGAAGCTTCGTCGTGATGATTTTGGTGGCGATGTTGATCGGCTCCACAATCGCCCAATCGCCGGCGGCATCTCCGTCAATGTCTCCAAGCAAATCGCCGTCGAAGGCTCCGTCGGCTTCTCCGTCTGTGAAGTCTCCGAAATCATCTCCCGCGGCGGCGCCTACTCCGTCCTCTCTGAAGTCTCCGCCATCTCCTCCTGCTTCTTCTCCGTCCTCGTCTCCATCTCCTGCGACTTCTCCGTCCTCGATCTCCTCGCCTCCAGCCGACGCTCCGGCTCCGTCCGGTAATGGCGCCGCTTCGATATCTTTCTCGGTGATCGGATCTGTGGCCGTTGCGCTATACGCCGCCGTTTTGATGATCTGA

mRNA sequence

ATGGCGATTAGAAGCTTCGTCGTGATGATTTTGGTGGCGATGTTGATCGGCTCCACAATCGCCCAATCGCCGGCGGCATCTCCGTCAATGTCTCCAAGCAAATCGCCGTCGAAGGCTCCGTCGGCTTCTCCGTCTGTGAAGTCTCCGAAATCATCTCCCGCGGCGGCGCCTACTCCGTCCTCTCTGAAGTCTCCGCCATCTCCTCCTGCTTCTTCTCCGTCCTCGTCTCCATCTCCTGCGACTTCTCCGTCCTCGATCTCCTCGCCTCCAGCCGACGCTCCGGCTCCGTCCGGTAATGGCGCCGCTTCGATATCTTTCTCGGTGATCGGATCTGTGGCCGTTGCGCTATACGCCGCCGTTTTGATGATCTGA

Coding sequence (CDS)

ATGGCGATTAGAAGCTTCGTCGTGATGATTTTGGTGGCGATGTTGATCGGCTCCACAATCGCCCAATCGCCGGCGGCATCTCCGTCAATGTCTCCAAGCAAATCGCCGTCGAAGGCTCCGTCGGCTTCTCCGTCTGTGAAGTCTCCGAAATCATCTCCCGCGGCGGCGCCTACTCCGTCCTCTCTGAAGTCTCCGCCATCTCCTCCTGCTTCTTCTCCGTCCTCGTCTCCATCTCCTGCGACTTCTCCGTCCTCGATCTCCTCGCCTCCAGCCGACGCTCCGGCTCCGTCCGGTAATGGCGCCGCTTCGATATCTTTCTCGGTGATCGGATCTGTGGCCGTTGCGCTATACGCCGCCGTTTTGATGATCTGA

Protein sequence

MAIRSFVVMILVAMLIGSTIAQSPAASPSMSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPASSPSSSPSPATSPSSISSPPADAPAPSGNGAASISFSVIGSVAVALYAAVLMI
Homology
BLAST of Lag0019764 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 107/127 (84.25%), Postives = 113/127 (88.98%), Query Frame = 0

Query: 1   MAIRSFVVMILVAMLIGSTIAQSPAASPSMSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIRSFV MILVA+LIGS IAQSP ASP  SPSKSPSKAPSASPSVKSPKSSPAAAPTPS
Sbjct: 1   MAIRSFVAMILVALLIGSAIAQSPGASP--SPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60

Query: 61  SLKSPPSPPASSPSSSP----SPATSPSSISSPPADAPAPSGNGAASISFSVIGSVAVAL 120
           SLKSPPSPP++SP++SP    SPATSPS ISSPPADAPAPSGNGAASISFSV GSVAV L
Sbjct: 61  SLKSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVL 120

Query: 121 YAAVLMI 124
           Y  VL+I
Sbjct: 121 YTVVLLI 125

BLAST of Lag0019764 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 7.5e-32
Identity = 100/123 (81.30%), Postives = 111/123 (90.24%), Query Frame = 0

Query: 1   MAIRSFVVMILVAMLIGSTIAQSPAASPSMSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIR FVVM++VAMLI S IAQSP+ASPS+SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPASSPSSSPSPATSPSSISSPPADAPAPSGNGAASISFSVIGSVAVALYAAV 120
           SL+SPPSPPA+SPS SPSP+ SPSSISSPPADAPAPSGN AASIS S+ GSVA  LYA V
Sbjct: 61  SLQSPPSPPAASPSLSPSPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVLYAIV 120

Query: 121 LMI 124
           LMI
Sbjct: 121 LMI 123

BLAST of Lag0019764 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-31
Identity = 102/123 (82.93%), Postives = 110/123 (89.43%), Query Frame = 0

Query: 1   MAIRSFVVMILVAMLIGSTIAQSPAASPSMSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIR FVVM+ VAMLI S IAQSP+ASPS+SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPASSPSSSPSPATSPSSISSPPADAPAPSGNGAASISFSVIGSVAVALYAAV 120
           SLKSPPSPPA+SPS SPSP  SPSSISSPPADAPAPSGN AASISFS+ GSVA  LYA V
Sbjct: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIV 120

Query: 121 LMI 124
           LMI
Sbjct: 121 LMI 121

BLAST of Lag0019764 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 98/118 (83.05%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MAIRSFVVMILVAMLIGSTIAQSPAASPSMSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIR FVVM++VAMLI S IAQSP+ASPS+SP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPASSPSSSPSPATSPSSISSPPADAPAPSGNGAASISFSVIGSVAVALYA 119
           SLKSPPSPPA+SPS SPSP  SPSSISSPPADAPAPSGN AASISFS+ GSVA  LYA
Sbjct: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYA 116

BLAST of Lag0019764 vs. NCBI nr
Match: XP_022922765.1 (classical arabinogalactan protein 1-like [Cucurbita moschata] >KAG6576848.1 Classical arabinogalactan protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 102/123 (82.93%), Postives = 106/123 (86.18%), Query Frame = 0

Query: 1   MAIRSFVVMILVAMLIGSTIAQSPAASPSMSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
           MAIRSFVVMILVA+LIGS IAQSPAASPS+SP KSPSKAPSASPSVKSPKSSP AAPT  
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPT-- 60

Query: 61  SLKSPPSPPASSPSSSPSPATSPSSISSPPADAPAPSGNGAASISFSVIGSVAVALYAAV 120
                   PASSPS+SPSPA SPSSISSPPADAPAPSG+GAASISFSV GSVAV LYA V
Sbjct: 61  --------PASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVV 112

Query: 121 LMI 124
           LMI
Sbjct: 121 LMI 112

BLAST of Lag0019764 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-10
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 4   RSFVVMILVAMLIGSTIAQSPAASPS------MSPSKSPSK--APSASPSVKSPKSSPAA 63
           +S V ++L A+LI S +AQSPA +PS      +SP+ SP K  AP+ +P V SP  SPAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64

Query: 64  APTPSSLKSPPSPPASSPSSSPSPATSPSSISSPPADAPAPSGNGAASISFSVIGSVAVA 123
           A TP S  SPPSPP +   ++ SPA SPS+IS  P +AP P+  GA S  F+  GSVAV 
Sbjct: 65  ALTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVM 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877310.11.2e-3284.25classical arabinogalactan protein 1 [Benincasa hispida][more]
XP_023542663.17.5e-3281.30classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022942993.12.8e-3182.93classical arabinogalactan protein 1-like [Cucurbita moschata][more]
KAG7030900.12.4e-3083.05hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022922765.11.2e-2982.93classical arabinogalactan protein 1-like [Cucurbita moschata] >KAG6576848.1 Clas... [more]
Match NameE-valueIdentityDescription
Q8LCN52.9e-1051.56Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..99
NoneNo IPR availablePANTHERPTHR36321:SF2CLASSICAL ARABINOGALACTAN PROTEIN 1coord: 1..123
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019764.1Lag0019764.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane