Lag0019752 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019752
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProline-rich receptor-like protein kinase PERK2
Locationchr5: 45132485 .. 45132883 (-)
RNA-Seq ExpressionLag0019752
SyntenyLag0019752
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCCAACTTCTTCATCCTAGCCTTCATGGTTGCTATAGCATTTTCGAGTGTCGACGCTGGTCGAACTACTCGCCATCTTATGCAAACCGCTCAGCCTTCGATTCCAAATTTGCCACCACTGCCATCGCTACCTAAGCCAACTGCGCTACCGCCTCTACCACCGAGTATTCCATCCATCCCGAATCTCCCACAACCTACATTGCCAATTGCTCAACCTCCGCTACCTAAGCTTACACTTCCTCCCGGCTTCCCGATGAACATCCCGACTGGAGCTGCATTGCCTCCTCTTCCGACGACTTCGCTTCCGAACTTGCCATCCCTCCCATCTATCCCGACTTCACTTCCGTCGCTCCCGTTCTTCTCTCCTCCACCTGCAACTTCTTCCCCTTGA

mRNA sequence

ATGGCTTCTTCCAACTTCTTCATCCTAGCCTTCATGGTTGCTATAGCATTTTCGAGTGTCGACGCTGGTCGAACTACTCGCCATCTTATGCAAACCGCTCAGCCTTCGATTCCAAATTTGCCACCACTGCCATCGCTACCTAAGCCAACTGCGCTACCGCCTCTACCACCGAGTATTCCATCCATCCCGAATCTCCCACAACCTACATTGCCAATTGCTCAACCTCCGCTACCTAAGCTTACACTTCCTCCCGGCTTCCCGATGAACATCCCGACTGGAGCTGCATTGCCTCCTCTTCCGACGACTTCGCTTCCGAACTTGCCATCCCTCCCATCTATCCCGACTTCACTTCCGTCGCTCCCGTTCTTCTCTCCTCCACCTGCAACTTCTTCCCCTTGA

Coding sequence (CDS)

ATGGCTTCTTCCAACTTCTTCATCCTAGCCTTCATGGTTGCTATAGCATTTTCGAGTGTCGACGCTGGTCGAACTACTCGCCATCTTATGCAAACCGCTCAGCCTTCGATTCCAAATTTGCCACCACTGCCATCGCTACCTAAGCCAACTGCGCTACCGCCTCTACCACCGAGTATTCCATCCATCCCGAATCTCCCACAACCTACATTGCCAATTGCTCAACCTCCGCTACCTAAGCTTACACTTCCTCCCGGCTTCCCGATGAACATCCCGACTGGAGCTGCATTGCCTCCTCTTCCGACGACTTCGCTTCCGAACTTGCCATCCCTCCCATCTATCCCGACTTCACTTCCGTCGCTCCCGTTCTTCTCTCCTCCACCTGCAACTTCTTCCCCTTGA

Protein sequence

MASSNFFILAFMVAIAFSSVDAGRTTRHLMQTAQPSIPNLPPLPSLPKPTALPPLPPSIPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIPTGAALPPLPTTSLPNLPSLPSIPTSLPSLPFFSPPPATSSP
Homology
BLAST of Lag0019752 vs. NCBI nr
Match: KGN53897.1 (hypothetical protein Csa_011821 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-31
Identity = 98/140 (70.00%), Postives = 104/140 (74.29%), Query Frame = 0

Query: 1   MASSNFFILAFMVAIAFSSVDAGRTTRHLMQTAQPSIPNLPPLPSLPKPTALPPLP---- 60
           MAS N FIL FMV   FSSVDA RT+RHL+QT    I NLPP+PSLPKP+ALPPLP    
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQT----ILNLPPMPSLPKPSALPPLPPMPT 60

Query: 61  -PSIPSIPNLPQPTLPIAQPPLPKLTLP--PGFPMNIPTGAALPPLPTTSLPNLPSLPSI 120
            PSIPSIPN PQP+       LPKLTLP  P  PMNIPT   LPPLPTTSLPNLP L SI
Sbjct: 61  GPSIPSIPNFPQPS-------LPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSI 120

Query: 121 PTSLP-SLPFFSPPPATSSP 133
            T+LP SLPFFSPPPATSSP
Sbjct: 121 STTLPSSLPFFSPPPATSSP 129

BLAST of Lag0019752 vs. NCBI nr
Match: XP_038904306.1 (protein PELPK1-like [Benincasa hispida])

HSP 1 Score: 142.1 bits (357), Expect = 3.4e-30
Identity = 95/136 (69.85%), Postives = 104/136 (76.47%), Query Frame = 0

Query: 1   MASSNFFILAFMVAIAFSSVDAGRTTRHLMQTAQPSIPNLPPLPSLPKPTALPPLP-PSI 60
           MAS N+FILA MVA+ FSSVDA RTTRHL+QT  P+ P LPP+PSLP P    P+  PSI
Sbjct: 1   MASFNYFILAVMVALTFSSVDAARTTRHLLQTI-PNFPPLPPMPSLPLPALPNPMTGPSI 60

Query: 61  PSIPNLPQPTLPIAQPPLPKLTLP--PGFPMNIPTGAALPPLPTTSLPNLPSLPSIPTSL 120
           PSIPNLPQP+       LPKLTLP  P FP +IPT  ALPPL T SLPNLPSLPSIPT+L
Sbjct: 61  PSIPNLPQPS-------LPKLTLPPLPSFPTSIPTKVALPPLSTASLPNLPSLPSIPTTL 120

Query: 121 P-SLPFFSPPPATSSP 133
           P SLPFF PPPATSSP
Sbjct: 121 PSSLPFFPPPPATSSP 128

BLAST of Lag0019752 vs. NCBI nr
Match: XP_038904304.1 (RNA-binding protein 12-like [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-26
Identity = 86/138 (62.32%), Postives = 100/138 (72.46%), Query Frame = 0

Query: 1   MASSNF-FILAFMVAIAFSSVDAGRTTRHLMQTAQPSIPNLPPLPSLPKPTALPPLP--- 60
           MASS +  I+AFM  + FS++D GR  RHL+QTA    PN+P  PSLPKPTALPPLP   
Sbjct: 1   MASSKYLMIIAFMAILVFSTIDTGRAARHLLQTAP---PNMPGFPSLPKPTALPPLPPLP 60

Query: 61  --PSIPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIP-TGAALPPLPTTSLPNLPSLPSI 120
             P +PSIPNLPQPTLP + P LP L   P FP NIP TG  LPPLPTTS   LP+LPSI
Sbjct: 61  TGPGMPSIPNLPQPTLPSSLPKLPPL---PSFPGNIPVTGVTLPPLPTTS---LPTLPSI 120

Query: 121 PTSLPSLPFFSPPPATSS 132
           PT+ PS+PF +PPPAT+S
Sbjct: 121 PTTFPSIPFLTPPPATTS 129

BLAST of Lag0019752 vs. NCBI nr
Match: KAA0056641.1 (proline-rich receptor-like protein kinase PERK2 [Cucumis melo var. makuwa] >TYK07567.1 proline-rich receptor-like protein kinase PERK2 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 5.0e-26
Identity = 79/133 (59.40%), Postives = 96/133 (72.18%), Query Frame = 0

Query: 1   MASSNFFILAFMVAIAFSSVDAGRTTRHLMQTAQPSIPNLPPLPSLPKPTALPPLPP-SI 60
           MASS F I+AFM  +A SS+D G+  RHL+QTA P +PNLP +     PT +PPLP  S 
Sbjct: 1   MASSKFLIIAFMATLALSSIDVGQAARHLLQTAPPLVPNLPVI-----PTGIPPLPALSN 60

Query: 61  PSIPNLPQPTLP-IAQPPLPKLTLPPGFPMNIPTGAALPPLPTTSLPNLPSLPSIPTSLP 120
           P++PNLPQPTLP +  PPL      P  P+NIP+G ALPPLP  +LPN PS+P+IPTS P
Sbjct: 61  PTLPNLPQPTLPKVNLPPL------PSSPVNIPSGLALPPLPNMALPNFPSIPTIPTSFP 120

Query: 121 SLPFFSPPPATSS 132
           S+PF SPPPATSS
Sbjct: 121 SIPFLSPPPATSS 122

BLAST of Lag0019752 vs. NCBI nr
Match: KAG6595525.1 (hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 6.6e-26
Identity = 80/134 (59.70%), Postives = 93/134 (69.40%), Query Frame = 0

Query: 1   MASSNFFILAFMVAIAFSSVDAGRTTRHLMQTAQPSI---PNLPPLPSLPKPTALPPLPP 60
           MASSN+ I+AFM  + FS++D GR  RHL+Q A PS+   P+LPPLPSLP PT    +  
Sbjct: 1   MASSNYLIIAFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPT----IGS 60

Query: 61  SIPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIPTGAALPPLPTTSLPNLPSLPSIPTSL 120
            IPSIP+LPQPTLP  QP LPKL   P FP NIPTG ALPPLPTT LPNLPS+PS+    
Sbjct: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPSL---- 120

Query: 121 PSLPFFSPPPATSS 132
                 +PPP TSS
Sbjct: 121 ------TPPPTTSS 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53897.14.0e-3170.00hypothetical protein Csa_011821 [Cucumis sativus][more]
XP_038904306.13.4e-3069.85protein PELPK1-like [Benincasa hispida][more]
XP_038904304.12.3e-2662.32RNA-binding protein 12-like [Benincasa hispida][more]
KAA0056641.15.0e-2659.40proline-rich receptor-like protein kinase PERK2 [Cucumis melo var. makuwa] >TYK0... [more]
KAG6595525.16.6e-2659.70hypothetical protein SDJN03_12078, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..78
NoneNo IPR availablePANTHERPTHR33088:SF33PROTEIN APP1-LIKEcoord: 1..132
IPR044659Protein PELPK-likePANTHERPTHR33088MUCIN-2coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019752.1Lag0019752.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity