Lag0019710 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019710
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Phytosulfokine-beta
Location	chr5: 44774738 .. 44775086 (-)
RNA-Seq Expression	Lag0019710
Synteny	Lag0019710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAACTTTTGACCACCATCTTCACATTTCTCTTCCTTTTCTTCTTCTTTTTCTCCTCCTCAACGTCCACCGTCGTTGCCCGTCCCGTGCCCGGTTTTTCAAACAATTTTCCAAGGACTACTCGAGACGGGGTATGTAAATTTCTCAAAAACTTCTCTGATTAATATCTGTTTCAAGAAAAAAAGCAGTAAATATTGGTTTTTTTTTTTGGTGAAGTTAAAGGTTGTGGATCATGTTTTTGAGGAAGAGAGTTGTGATGGAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCTCATGCTGATTATATCTACACAGATAAGCAGAAGCCATGA

mRNA sequence

ATGGCTTCCAAACTTTTGACCACCATCTTCACATTTCTCTTCCTTTTCTTCTTCTTTTTCTCCTCCTCAACGTCCACCGTCGTTGCCCGTCCCGTGCCCGGTTTTTCAAACAATTTTCCAAGGACTACTCGAGACGGGTTAAAGGTTGTGGATCATGTTTTTGAGGAAGAGAGTTGTGATGGAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCTCATGCTGATTATATCTACACAGATAAGCAGAAGCCATGA

Coding sequence (CDS)

ATGGCTTCCAAACTTTTGACCACCATCTTCACATTTCTCTTCCTTTTCTTCTTCTTTTTCTCCTCCTCAACGTCCACCGTCGTTGCCCGTCCCGTGCCCGGTTTTTCAAACAATTTTCCAAGGACTACTCGAGACGGGTTAAAGGTTGTGGATCATGTTTTTGAGGAAGAGAGTTGTGATGGAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCTCATGCTGATTATATCTACACAGATAAGCAGAAGCCATGA

Protein sequence

MASKLLTTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRDGLKVVDHVFEEESCDGIGEEYCLMRKTLAAHADYIYTDKQKP

Homology

[Close]

BLAST of Lag0019710 vs. NCBI nr
Match: KAG6600274.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MASKLLTTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRDGLKVVDHVFEEESCD 60
          MASKL+T+IFTFLFLFFF FSS+TS V A+P+PG +N  PRTTRDG KVVD V EEESC 
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSSTTS-VFAQPIPGSTNTSPRTTRDGFKVVDDVLEEESC- 60

Query: 61 GIGEEYCLMRKTLAAHADYIYTDKQKP 88
          GIGEE+CLMRKTLAAHADYIYTDKQ+P
Sbjct: 61 GIGEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of Lag0019710 vs. NCBI nr
Match: XP_022149343.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 70/88 (79.55%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MASKLLTTIFTFLFLFFFFFSSSTS-TVVARPVPGFSNNFPRTTRDGLKVVDHVFEEESC 60
          MASKLLTT FTFL LFFFFF SS + TV ARPVP F N FP TTR GLKVVD V EEESC
Sbjct: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 61 DGIGEEYCLMRKTLAAHADYIYTDKQKP 88
           GIGEEYCLMRKTLAAH DYIYTD Q+P
Sbjct: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

[Close]

BLAST of Lag0019710 vs. NCBI nr
Match: XP_022941982.1 (phytosulfokines-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MASKLLTTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRDGLKVVDHVFEEESCD 60
          MASKL+T+IFTFLFLFFF FSS+TS V ARP+PG +N  P TTRDG KVVD V EEESC 
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSSTTS-VFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC- 60

Query: 61 GIGEEYCLMRKTLAAHADYIYTDKQKP 88
          GIGEE+CLMRKTLAAHADYIYTDKQ+P
Sbjct: 61 GIGEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of Lag0019710 vs. NCBI nr
Match: XP_004150263.1 (phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-26
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MASKLLTTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRDGLKVVDHVFEEESCD 60
          MASKL T+I+ FLFLF FF SSST+ + ARPVPGFSN F  T+RDG+ V D V EEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 GIGEEYCLMRKTLAAHADYIYTDKQKP 88
           IGEEYCLMRKTLAAH DYIYTD QKP
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of Lag0019710 vs. NCBI nr
Match: KAA0044319.1 (Phytosulfokines 3 precursor family protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 4.8e-25
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MASKLLTTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRDGLKVVDHVFEEESCD 60
          MASKL T+I+ FLFLF FF SSST+ V ARPVPGFSN F  T+RDG  VVD V EEESCD
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVPGFSNAFLGTSRDG--VVDDVLEEESCD 60

Query: 61 GIGEEYCLMRKTLAAHADYIYTDKQKP 88
           IGE+YCLMRKT+AAH DYIYTD QKP
Sbjct: 61 EIGEDYCLMRKTVAAHVDYIYTDSQKP 85

[Close]

BLAST of Lag0019710 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 1  MASKLLTTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRDGLKVVDHVFEEESCD 60
          M+SK +T     L L    FS S +   ARP+       P  +   + V+     +E+C+
Sbjct: 1  MSSKAIT-----LLLIALLFSLSLAQ-AARPLQ------PADSTKSVHVIPEKVHDEACE 60

Query: 61 GIGEEYCLMRKTLAAHADYIYTDKQKP 88
          G+GEE CLMR+TL AH DYIYT    P
Sbjct: 61 GVGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of Lag0019710 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 35/82 (42.68%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 7  TTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRDGLKVVD-HVFEEESCDGIGEE 66
          TTIF    L       ST T  AR  P  +    R   + +K ++    EEESC+GIGEE
Sbjct: 5  TTIFIMALLL-----CSTLTYAARLTPTTTTALSR--ENSVKEIEGDKVEEESCNGIGEE 64

Query: 67 YCLMRKTLAAHADYIYTDKQKP 88
           CL+R++L  H DYIYT   KP
Sbjct: 65 ECLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Lag0019710 vs. ExPASy Swiss-Prot
Match: Q9SZG4 (Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-05
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 6  LTTIFTFLFLFFFFFSSSTSTVVARPVPGFSNNFPRTTRD--GLKVVD---HVFEEESCD 65
          L+T+ T   L      ++  T  ARP P +  +F  +  D   L++++   H    ESCD
Sbjct: 4  LSTLITIALL----LCATMLTCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCD 63

Query: 66 GIGEEYCLMRKTLAAHADYIYTDK 85
             +E CL+R+TL AH DYIYT K
Sbjct: 64 KEDDEDCLVRRTLTAHLDYIYTHK 83

[Close]

BLAST of Lag0019710 vs. ExPASy Swiss-Prot
Match: O81003 (Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 30/72 (41.67%), Postives = 37/72 (51.39%), Query Frame = 0


Query: 23 STSTVVARPVPGFSNNFPRTTRDGL--------KVVDHVFEEESCDGIGEEYCLMRKTLA 82
          ST    ARP P  S +   T  D          K+ D    +E+C G  +E CLMR+TL 
Sbjct: 16 STLMCTARPEPAISISI-TTAADPCNMEKKIEGKLDDMHMVDENC-GADDEDCLMRRTLV 75

Query: 83 AHADYIYTDKQK 87
          AH DYIYT K+K
Sbjct: 76 AHTDYIYTQKKK 85

The following BLAST results are available for this feature:

BLAST of Lag0019710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600274.1	1.4e-27	79.31	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022149343.1	1.4e-27	79.55	phytosulfokines-like [Momordica charantia]	[more]
XP_022941982.1	5.1e-27	79.31	phytosulfokines-like [Cucurbita moschata]	[more]
XP_004150263.1	2.5e-26	74.71	phytosulfokines 3 [Cucumis sativus]	[more]
KAA0044319.1	4.8e-25	74.71	Phytosulfokines 3 precursor family protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0019710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	2.8e-07	39.08	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9M2Y0	3.6e-07	42.68	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
Q9SZG4	9.8e-05	36.90	Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1	[more]
O81003	1.7e-04	41.67	Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 53..86 e-value: 4.6E-10 score: 40.4
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..87
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019710.1	Lag0019710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity