Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACGCCGCCGCCGGAGGCAAAAAACAGTACTGGCTTCTGAAGACGGAGCCGGCGGACTGGTCTTGGGCCGACCAAGCCGCGAACGGCGGGCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCTCAGAAGCATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCGTCGTGGGCGTGGTCGCCGTCGCACGAGAGTGGTACTCGGAGGCAGACGGCAGCGACGCCGTCGTCGACGTCGAGGCGGTGGGGGAAATGAGGGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATGGAAGGGATGAAGAATTTCGCGCTGTTTCGGCAACCGAGGCTGTCGGTTGTGCCGGTCGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACGGAGGGCGGCCATGGGAGTGAGGGATAG
mRNA sequence
ATGGCCAACGCCGCCGCCGGAGGCAAAAAACAGTACTGGCTTCTGAAGACGGAGCCGGCGGACTGGTCTTGGGCCGACCAAGCCGCGAACGGCGGGCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCTCAGAAGCATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCGTCGTGGGCGTGGTCGCCGTCGCACGAGAGTGGTACTCGGAGGCAGACGGCAGCGACGCCGTCGTCGACGTCGAGGCGGTGGGGGAAATGAGGGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATGGAAGGGATGAAGAATTTCGCGCTGTTTCGGCAACCGAGGCTGTCGGTTGTGCCGGTCGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACGGAGGGCGGCCATGGGAGTGAGGGATAG
Coding sequence (CDS)
ATGGCCAACGCCGCCGCCGGAGGCAAAAAACAGTACTGGCTTCTGAAGACGGAGCCGGCGGACTGGTCTTGGGCCGACCAAGCCGCGAACGGCGGGCGAACAAAGTGGGACGGCGTCAAGAACAAGCAAGCTCAGAAGCATCTCAAGTCCATGAAACTCGGCGACCTCTGTTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCGTCGTGGGCGTGGTCGCCGTCGCACGAGAGTGGTACTCGGAGGCAGACGGCAGCGACGCCGTCGTCGACGTCGAGGCGGTGGGGGAAATGAGGGAAGCGGTGGATTTGAAAGAGATGAAGAAGGGGATGGAAGGGATGAAGAATTTCGCGCTGTTTCGGCAACCGAGGCTGTCGGTTGTGCCGGTCGCGAAGGAGATTTGGGAGAAGATCTGCGAATTGGGAGGCGGATTTGAAGGGGATGGAACGGAGGGCGGCCATGGGAGTGAGGGATAG
Protein sequence
MANAAAGGKKQYWLLKTEPADWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFYHSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSEG
Homology
BLAST of Lag0019709 vs. NCBI nr
Match:
KAG6600275.1 (Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 143/157 (91.08%), Postives = 152/157 (96.82%), Query Frame = 0
Query: 1 MANAAAGGKKQYWLLKTEPADWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
MA+AAAG KKQ+WLLKTEPA+WSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 1 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60
Query: 61 HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGMEGMKNFALF 120
HSGAKARR+VGVV+VAREWYSE DG DAVVDVEAVGEMREAVDLKEMKKG+EGMK+FALF
Sbjct: 61 HSGAKARRIVGVVSVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120
Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
RQPRLSVVPVAKEIWEKICELGGGFEGDGT+ HGSE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 157
BLAST of Lag0019709 vs. NCBI nr
Match:
KAG7030934.1 (Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 142/157 (90.45%), Postives = 152/157 (96.82%), Query Frame = 0
Query: 1 MANAAAGGKKQYWLLKTEPADWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
MA+AAAG KKQ+WLLKTEPA+WSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 146 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 205
Query: 61 HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGMEGMKNFALF 120
HSGAKARR+VGV++VAREWYSE DG DAVVDVEAVGEMREAVDLKEMKKG+EGMK+FALF
Sbjct: 206 HSGAKARRIVGVISVAREWYSEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 265
Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
RQPRLSVVPVAKEIWEKICELGGGFEGDGT+ HGSE
Sbjct: 266 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 302
BLAST of Lag0019709 vs. NCBI nr
Match:
XP_023530564.1 (thymocyte nuclear protein 1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 295.0 bits (754), Expect = 3.7e-76
Identity = 142/157 (90.45%), Postives = 149/157 (94.90%), Query Frame = 0
Query: 1 MANAAAGGKKQYWLLKTEPADWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
MA AA G KKQ+WLLKTEPA+WSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY
Sbjct: 1 MAGAAVGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
Query: 61 HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGMEGMKNFALF 120
HSGAKARR+VGVV+VAREWYSE DG DAVVDVEAVGEMRE VDLKEMKKG+EGMK+FALF
Sbjct: 61 HSGAKARRIVGVVSVAREWYSEGDGGDAVVDVEAVGEMREPVDLKEMKKGIEGMKDFALF 120
Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
RQPRLSVVPVAKEIWEKICELGGGFEGDGT+ HGSE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 157
BLAST of Lag0019709 vs. NCBI nr
Match:
XP_022941981.1 (thymocyte nuclear protein 1 [Cucurbita moschata])
HSP 1 Score: 294.3 bits (752), Expect = 6.4e-76
Identity = 142/157 (90.45%), Postives = 151/157 (96.18%), Query Frame = 0
Query: 1 MANAAAGGKKQYWLLKTEPADWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
MA+AAAG KKQ+WLLKTEPA+WSWADQAANGGRTKWDGVKNKQAQK+LKSMKLGDLCFFY
Sbjct: 1 MADAAAGDKKQFWLLKTEPAEWSWADQAANGGRTKWDGVKNKQAQKYLKSMKLGDLCFFY 60
Query: 61 HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGMEGMKNFALF 120
HSGAKARR+VGVV+VAREWY E DG DAVVDVEAVGEMREAVDLKEMKKG+EGMK+FALF
Sbjct: 61 HSGAKARRIVGVVSVAREWYLEGDGGDAVVDVEAVGEMREAVDLKEMKKGIEGMKDFALF 120
Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSE 158
RQPRLSVVPVAKEIWEKICELGGGFEGDGT+ HGSE
Sbjct: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTDCRHGSE 157
BLAST of Lag0019709 vs. NCBI nr
Match:
XP_038905606.1 (thymocyte nuclear protein 1 [Benincasa hispida])
HSP 1 Score: 293.9 bits (751), Expect = 8.3e-76
Identity = 145/158 (91.77%), Postives = 148/158 (93.67%), Query Frame = 0
Query: 1 MANAAAGGKKQYWLLKTEPADWSWADQAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
MA AG +KQYWLLKTEPA+WSWADQAAN GRTKWDGVKNKQAQKHLKSMKLGDLCFFY
Sbjct: 1 MAKDVAGDRKQYWLLKTEPAEWSWADQAANDGRTKWDGVKNKQAQKHLKSMKLGDLCFFY 60
Query: 61 HSGAKARRVVGVVAVAREWYSEADGSDAVVDVEAVGEMREAVDLKEMKKGMEGMKNFALF 120
HSGAKARRVVGVVAVAREWYS AD D VVDVEAVGEMRE VDLKEMKKGMEGMKNFALF
Sbjct: 61 HSGAKARRVVGVVAVAREWYS-ADDDDVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALF 120
Query: 121 RQPRLSVVPVAKEIWEKICELGGGFEGDGTEGGHGSEG 159
RQPRLSVVPVAKEIW+KICELGGGFEGDGTEGGHGSEG
Sbjct: 121 RQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSEG 157
BLAST of Lag0019709 vs. ExPASy Swiss-Prot
Match:
Q91YJ3 (Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 58/171 (33.92%), Postives = 85/171 (49.71%), Query Frame = 0
Query: 7 GGK--KQYWLLKTEPAD---------WSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLG 66
GGK YWL+K+EP +S D A +T WDGV+N QA+ L++MKL
Sbjct: 50 GGKNLSNYWLMKSEPESRLEKGIDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLE 109
Query: 67 DLCFFYHSGAKARRVVGVVAVAREWY-----------------SEADGSDAVVDVEAVGE 126
D FFYHS K +VG++ + +E Y E D ++VDV+ V
Sbjct: 110 DEAFFYHSNCKQPGIVGLMKIVKEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRM 169
Query: 127 MREAVDLKEMK------KGMEG-MKNFALFRQPRLSVVPVAKEIWEKICEL 142
M+ + L+E+K K G +K+ LF + RLSV P+ +E ++ I L
Sbjct: 170 MKRFIPLEELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220
BLAST of Lag0019709 vs. ExPASy Swiss-Prot
Match:
Q90679 (Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 12 YWLLKTEP---------ADWSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLGDLCFFYH 71
+WLLK+EP +S D A +T W+GV+N QA+ L++MKLG FFYH
Sbjct: 73 HWLLKSEPESRLEKGVDVKFSIEDLKAQPNQTTFWEGVRNYQARNFLRAMKLGQQAFFYH 132
Query: 72 SGAKARRVVGVVAVAREWY---SEADGSD--------------AVVDVEAVGEMREAVDL 131
S K +VG+V + +E Y ++ D D ++VDV+ V + + L
Sbjct: 133 SNCKEPGIVGIVKIVKEAYPDHTQFDQKDPHYDSSSRKENPKWSMVDVQFVRMTKRFIPL 192
Query: 132 KEMK------KGMEG-MKNFALFRQPRLSVVPVAKEIWEKICEL 142
E+K K G +KN LF + RLS+ P+ +E ++ + L
Sbjct: 193 SEIKTHHLAHKADGGPLKNMMLFSRQRLSIQPLTQEEFDFVLSL 236
BLAST of Lag0019709 vs. ExPASy Swiss-Prot
Match:
Q6P3E0 (Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 0
Query: 12 YWLLKTEPAD---------WSWAD-QAANGGRTKWDGVKNKQAQKHLKSMKLGDLCFFYH 71
YWL+K+EP +S D QA T WDGV+N QA L++MKL D FFYH
Sbjct: 57 YWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWNFLRAMKLEDEAFFYH 116
Query: 72 SGAKARRVVGVVAVAREWY-----------------SEADGSDAVVDVEAVGEMREAVDL 131
S K +VG++ + +E Y E + ++VDV+ V M+ + L
Sbjct: 117 SNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWSMVDVQFVRMMKRFISL 176
Query: 132 KEMK------KGMEG-MKNFALFRQPRLSVVPVAKEIWEKICEL 142
E+K K G +K+ LF + RLSV P+ +E ++ I L
Sbjct: 177 DELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFILSL 220
BLAST of Lag0019709 vs. ExPASy Swiss-Prot
Match:
Q9P016 (Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 12 YWLLKTEP---------ADWSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLGDLCFFYH 71
+WL+K+EP +S D A +T WDGV+N QA+ L++MKLG+ FFYH
Sbjct: 56 HWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYH 115
Query: 72 SGAKARRVVGVVAVAREWY-----------------SEADGSDAVVDVEAVGEMREAVDL 131
S K + G++ + +E Y E + ++VDV+ V M+ + L
Sbjct: 116 SNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPL 175
Query: 132 KEMK------KGMEG-MKNFALFRQPRLSVVPVAKEIWEKICEL 142
E+K K G +KN LF + RLS+ P+ +E ++ + L
Sbjct: 176 AELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 219
BLAST of Lag0019709 vs. ExPASy Swiss-Prot
Match:
Q6PFL8 (Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 0
Query: 13 WLLKTEP---------ADWSWADQAANGGRTK-WDGVKNKQAQKHLKSMKLGDLCFFYHS 72
WL+K+EP + D A +T WDGV+N QA+ ++ MK+G FFYHS
Sbjct: 63 WLMKSEPESRIENGVDVKFGIEDLKALPNQTGCWDGVRNYQARNFMREMKVGQQAFFYHS 122
Query: 73 GAKARRVVGVVAVAREWY----------------SEADGSD-AVVDVEAVGEMREAVDLK 132
K + G++ + +E Y S+AD +VDV+ ++ + L
Sbjct: 123 NCKEPGIAGLMKIVKEAYVDHTQFDKKDVHYDPSSKADNPKWHMVDVQFERMVKRFIPLA 182
Query: 133 EMKK-----GMEG--MKNFALFRQPRLSVVPVAKEIWEKICEL 142
E+KK ++G +K+ ALF + RLSV P+ E +E + L
Sbjct: 183 ELKKYHLEHRVKGGPLKDMALFTRARLSVQPLTAEEFEFVLSL 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6600275.1 | 1.3e-76 | 91.08 | Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KAG7030934.1 | 1.7e-76 | 90.45 | Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma... | [more] |
XP_023530564.1 | 3.7e-76 | 90.45 | thymocyte nuclear protein 1 [Cucurbita pepo subsp. pepo] | [more] |
XP_022941981.1 | 6.4e-76 | 90.45 | thymocyte nuclear protein 1 [Cucurbita moschata] | [more] |
XP_038905606.1 | 8.3e-76 | 91.77 | thymocyte nuclear protein 1 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Q91YJ3 | 2.7e-13 | 33.92 | Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1 | [more] |
Q90679 | 5.2e-12 | 32.32 | Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1 | [more] |
Q6P3E0 | 5.2e-12 | 33.54 | Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1 | [more] |
Q9P016 | 6.7e-12 | 31.10 | Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1 | [more] |
Q6PFL8 | 1.4e-09 | 30.67 | Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1 | [more] |