Lag0019708 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019708
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cyclin-dependent kinase
Location	chr5: 44767516 .. 44767929 (-)
RNA-Seq Expression	Lag0019708
Synteny	Lag0019708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCTTATATCAAGATGGACAAGAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCAAGCGTACCATTTCGTAGTCTCGTTCTGATCTCTCTCGCTTATCGACACTCAGGTTTTTATCGCTCTCTCTCGCTATTTTTCTCTGTAATCTTCGCGGAGTTTGCAATCGCGGAATGGATGTTCTGGTTTGTGATGATTTATTTTGGTTTGATCGTGTAGCTACCGATTCTGAGTTTCTCTCATGGATTCAGATATGGAACCGTTTCGGATTAATAGCTCCGAAACCAAACTTGTAA

mRNA sequence

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCTTATATCAAGATGGACAAGAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCAAGCCTACCGATTCTGAGTTTCTCTCATGGATTCAGATATGGAACCGTTTCGGATTAATAGCTCCGAAACCAAACTTGTAA

Coding sequence (CDS)

ATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCGCTGAAGAAGTCGAAGAAGCCTTATATCAAGATGGACAAGAGCTCCAGCGTCAAGGTTGAGATCCGTAGCCGAAAAGCTCGATTGTTGATTGATAAGACCTTGAAGGTCGCCGATCGTCCTGGCAAGCCTACCGATTCTGAGTTTCTCTCATGGATTCAGATATGGAACCGTTTCGGATTAATAGCTCCGAAACCAAACTTGTAA

Protein sequence

MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGKPTDSEFLSWIQIWNRFGLIAPKPNL

Homology

[Close]

BLAST of Lag0019708 vs. NCBI nr
Match: XP_008454414.1 (PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0044321.1 uncharacterized protein E6C27_scaffold46G00430 [Cucumis melo var. makuwa] >TYK29449.1 uncharacterized protein E5676_scaffold655G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 PTDS 65
           T S
Sbjct: 61 RTIS 64

[Close]

BLAST of Lag0019708 vs. NCBI nr
Match: XP_022149139.1 (uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncharacterized protein LOC111017632 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-21
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPY+KMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYVKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60

Query: 61 PTDS 65
           T S
Sbjct: 61 RTIS 64

[Close]

BLAST of Lag0019708 vs. NCBI nr
Match: XP_038905309.1 (uncharacterized protein LOC120091380 [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 5.4e-21
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60

Query: 61 PTDS 65
           T S
Sbjct: 61 RTIS 64

[Close]

BLAST of Lag0019708 vs. NCBI nr
Match: XP_004150261.1 (uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical protein Csa_014765 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-20
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKAR LIDKT+KVADRPGK
Sbjct: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARFLIDKTMKVADRPGK 60

Query: 61 PTDS 65
           T S
Sbjct: 61 RTIS 64

[Close]

BLAST of Lag0019708 vs. NCBI nr
Match: XP_022922964.1 (uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 uncharacterized protein LOC111810569 [Cucurbita pepo subsp. pepo] >KAG7014932.1 hypothetical protein SDJN02_22563, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.5 bits (267), Expect = 5.9e-20
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MANQLGNLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTLKVADRPGK 60
          MANQ G+LVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKT+KVADRPGK
Sbjct: 1  MANQFGSLVESIKSKVKALKKSKKPYIKMDKSSSVKVEIRSRKARLLIDKTMKVADRPGK 60

Query: 61 PTDS 65
           T S
Sbjct: 61 RTVS 64

The following BLAST results are available for this feature:

BLAST of Lag0019708 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454414.1	3.1e-21	96.88	PREDICTED: uncharacterized protein LOC103494825 [Cucumis melo] >ADN33813.1 hypot...	[more]
XP_022149139.1	4.1e-21	95.31	uncharacterized protein LOC111017632 [Momordica charantia] >XP_022149140.1 uncha...	[more]
XP_038905309.1	5.4e-21	95.31	uncharacterized protein LOC120091380 [Benincasa hispida]	[more]
XP_004150261.1	1.6e-20	93.75	uncharacterized protein LOC101219359 [Cucumis sativus] >KGN52743.1 hypothetical ...	[more]
XP_022922964.1	5.9e-20	92.19	uncharacterized protein LOC111430789 [Cucurbita moschata] >XP_023553058.1 unchar...	[more]

BLAST of Lag0019708 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563:SF12	SUBFAMILY NOT NAMED	coord: 1..60
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019708.1	Lag0019708.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity