Lag0019707 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019707
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein SOB FIVE-LIKE 6-like isoform X1
Location	chr5: 44759317 .. 44760201 (+)
RNA-Seq Expression	Lag0019707
Synteny	Lag0019707

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTGGGCTCTGAGTGTAGTAGTGGGTGTGAGTCTGGTTGGACTCTGTATTTGGAGCATTCGTTCCTTTCACATGGCGGCTCTGATCACATTGTTGGTCGAGAGAGTGGTTTCTGTGATGGATATTGGAAGGCTAAAGCTACTGAAGAAGAGGAGGAGGTTGAGGACCTTTCTATGGTTTCTGATGCATCTTCTGGGCCTCCACATTTGTTTGAAGATGAGGCTTGTTCTCATGAAGATGATGCCCATTTTTCTCATGCATCTAAGTCAGCCACATTGGGGAAGAGGAAGGGGAAGAAGCAGAAAATTAAAGAATATCAATGTCATGATCAGCCTTCTTCCTTCCTAGATGACACTGCTAGTTCTCCTGCTCACAATTTCACTGCTGTAAGTTTCTAGAACAATCTCTTTTAGTAGCCCCCTTTTAGCTTTGTCTATAATGATTATTCTGACCAATTGGGTACTCAATTAAAGTTACTTCTTTCAAATCTTCAGAATAATTTCACCAATCAAGCCTCAATGGAAAGCTTCTTGGGCTTCTCTCAAACTAGTCATTTTGAGGTATTTAGTCTGTTCTTCTCTCTCTCCCCACCCCCTCAAGTTCAATGCATGTTAATTGACATTGTTTTCTTTTTTGCTGTTTATGCAGGAAAGATCAGCATTTACAGAGCATTTTGGCTTCCTTCAATCTTCTCTATCAGGAAACAGATTGCAAAAGAACCAGTTAAGTTATTGCTTCTATTTTTGGGCACTCATAAAGCACAACTCTTGATTAATCACTGGGTTTGCTTTGAGTATTTTCTTAGGATTTCTAAACTGATTGTTTTCATTCTGCTTCTTAACAGGTGGTTTGAAGAGAAAGGAATAGGGATGAGATGA

mRNA sequence

ATGGATTTGTTGGGCTCTGAGTGTAGTAGTGGGTGTGAGTCTGGTTGGACTCTGTATTTGGAGCATTCGTTCCTTTCACATGGCGGCTCTGATCACATTGTTGGTCGAGAGAGTGGTTTCTGTGATGGATATTGGAAGGCTAAAGCTACTGAAGAAGAGGAGGAGGTTGAGGACCTTTCTATGGTTTCTGATGCATCTTCTGGGCCTCCACATTTGTTTGAAGATGAGGCTTGTTCTCATGAAGATGATGCCCATTTTTCTCATGCATCTAAGTCAGCCACATTGGGGAAGAGGAAGGGGAAGAAGCAGAAAATTAAAGAATATCAATGTCATGATCAGCCTTCTTCCTTCCTAGATGACACTGCTAGTTCTCCTGCTCACAATTTCACTGCTAATAATTTCACCAATCAAGCCTCAATGGAAAGCTTCTTGGGCTTCTCTCAAACTAGTCATTTTGAGGAAAGATCAGCATTTACAGAGCATTTTGGCTTCCTTCAATCTTCTCTATCAGGAAACAGATTGCAAAAGAACCAGTGGTTTGAAGAGAAAGGAATAGGGATGAGATGA

Coding sequence (CDS)

ATGGATTTGTTGGGCTCTGAGTGTAGTAGTGGGTGTGAGTCTGGTTGGACTCTGTATTTGGAGCATTCGTTCCTTTCACATGGCGGCTCTGATCACATTGTTGGTCGAGAGAGTGGTTTCTGTGATGGATATTGGAAGGCTAAAGCTACTGAAGAAGAGGAGGAGGTTGAGGACCTTTCTATGGTTTCTGATGCATCTTCTGGGCCTCCACATTTGTTTGAAGATGAGGCTTGTTCTCATGAAGATGATGCCCATTTTTCTCATGCATCTAAGTCAGCCACATTGGGGAAGAGGAAGGGGAAGAAGCAGAAAATTAAAGAATATCAATGTCATGATCAGCCTTCTTCCTTCCTAGATGACACTGCTAGTTCTCCTGCTCACAATTTCACTGCTAATAATTTCACCAATCAAGCCTCAATGGAAAGCTTCTTGGGCTTCTCTCAAACTAGTCATTTTGAGGAAAGATCAGCATTTACAGAGCATTTTGGCTTCCTTCAATCTTCTCTATCAGGAAACAGATTGCAAAAGAACCAGTGGTTTGAAGAGAAAGGAATAGGGATGAGATGA

Protein sequence

MDLLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKATEEEEEVEDLSMVSDASSGPPHLFEDEACSHEDDAHFSHASKSATLGKRKGKKQKIKEYQCHDQPSSFLDDTASSPAHNFTANNFTNQASMESFLGFSQTSHFEERSAFTEHFGFLQSSLSGNRLQKNQWFEEKGIGMR

Homology

[Close]

BLAST of Lag0019707 vs. NCBI nr
Match: KAG6600277.1 (hypothetical protein SDJN03_05510, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345.5 bits (885), Expect = 2.9e-91
Identity = 170/188 (90.43%), Postives = 172/188 (91.49%), Query Frame = 0


Query: 1   MDLLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKATEEEEEVEDLS 60
           MDLLGSECSSGCESGWTLYLE SFLSHGGSD IVGR SGFCDGYWKA+ATEE E  EDLS
Sbjct: 1   MDLLGSECSSGCESGWTLYLEQSFLSHGGSDRIVGRGSGFCDGYWKAEATEEHEVEEDLS 60

Query: 61  MVSDASSGPPHLFEDEACSHEDDAHFSHASKSATLGKRKGKKQKIKEYQCHDQPSSFLDD 120
           MVSDASSGPPH FEDEACSHEDD HFSHASKS T  K KGKKQKI EYQCHDQPSSFLDD
Sbjct: 61  MVSDASSGPPHFFEDEACSHEDDGHFSHASKSVTPEKNKGKKQKITEYQCHDQPSSFLDD 120

Query: 121 TASSPAHNFTANNFTNQASMESFLGFSQTSHFEERSAFTEHFGFLQSSLSGNRLQKNQWF 180
           TASSPAHNFTANNFTNQ SMESFLG SQTSHFEERS+FTEHFGFLQSSLSGNRLQKNQWF
Sbjct: 121 TASSPAHNFTANNFTNQGSMESFLGLSQTSHFEERSSFTEHFGFLQSSLSGNRLQKNQWF 180

Query: 181 EEKGIGMR 189
           E KGIGMR
Sbjct: 181 EGKGIGMR 188

[Close]

BLAST of Lag0019707 vs. NCBI nr
Match: XP_023530436.1 (uncharacterized protein LOC111792982 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342.4 bits (877), Expect = 2.4e-90
Identity = 168/188 (89.36%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDLLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKATEEEEEVEDLS 60
           MDLLGSECS GCESGWTLYLE SFLSHGGSD IVGRESGFCDGYW+A+ATEE E  EDLS
Sbjct: 1   MDLLGSECSGGCESGWTLYLEQSFLSHGGSDRIVGRESGFCDGYWRAEATEEHEVEEDLS 60

Query: 61  MVSDASSGPPHLFEDEACSHEDDAHFSHASKSATLGKRKGKKQKIKEYQCHDQPSSFLDD 120
           MVSDASSGPPH FEDEACSHEDD HFSHASKS T  K KGKKQKI EYQCHDQPSSFLDD
Sbjct: 61  MVSDASSGPPHFFEDEACSHEDDGHFSHASKSVTPEKNKGKKQKITEYQCHDQPSSFLDD 120

Query: 121 TASSPAHNFTANNFTNQASMESFLGFSQTSHFEERSAFTEHFGFLQSSLSGNRLQKNQWF 180
           TASSPA NFTANNFTNQ SMESFLG SQTSHFEERS+FTEHFGFLQSSLSGNRLQKNQWF
Sbjct: 121 TASSPARNFTANNFTNQGSMESFLGLSQTSHFEERSSFTEHFGFLQSSLSGNRLQKNQWF 180

Query: 181 EEKGIGMR 189
           E KGIGMR
Sbjct: 181 EGKGIGMR 188

[Close]

BLAST of Lag0019707 vs. NCBI nr
Match: XP_022993429.1 (uncharacterized protein LOC111489443 [Cucurbita maxima])

HSP 1 Score: 340.5 bits (872), Expect = 9.2e-90
Identity = 168/188 (89.36%), Postives = 170/188 (90.43%), Query Frame = 0


Query: 1   MDLLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKATEEEEEVEDLS 60
           MDLL SECSSGCESGWTLYLE SFLSHGGSD IV RESGFCDGYWKA+ATEE E  EDLS
Sbjct: 1   MDLLDSECSSGCESGWTLYLEQSFLSHGGSDRIVDRESGFCDGYWKAEATEEHEVEEDLS 60

Query: 61  MVSDASSGPPHLFEDEACSHEDDAHFSHASKSATLGKRKGKKQKIKEYQCHDQPSSFLDD 120
           MVSDASSGPPH FEDEACSHEDD HFSHASKS T  K KGKKQKI EYQCHDQPSSFLDD
Sbjct: 61  MVSDASSGPPHFFEDEACSHEDDGHFSHASKSVTPEKNKGKKQKITEYQCHDQPSSFLDD 120

Query: 121 TASSPAHNFTANNFTNQASMESFLGFSQTSHFEERSAFTEHFGFLQSSLSGNRLQKNQWF 180
           TASSPAHNFTANNF NQ SMESFLG SQTSHFEERS+FTEHFGFLQSSLSGNRLQKNQWF
Sbjct: 121 TASSPAHNFTANNFPNQGSMESFLGLSQTSHFEERSSFTEHFGFLQSSLSGNRLQKNQWF 180

Query: 181 EEKGIGMR 189
           E KGIGMR
Sbjct: 181 EGKGIGMR 188

[Close]

BLAST of Lag0019707 vs. NCBI nr
Match: XP_022941980.1 (uncharacterized protein LOC111447186 [Cucurbita moschata])

HSP 1 Score: 340.5 bits (872), Expect = 9.2e-90
Identity = 168/188 (89.36%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDLLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKATEEEEEVEDLS 60
           MDLLGSE SSGCESGWTLYLE SFLSHGGSD IV RESGFCDGYWKA+ATEE E  +DLS
Sbjct: 1   MDLLGSESSSGCESGWTLYLEQSFLSHGGSDRIVSRESGFCDGYWKAEATEEHEVEKDLS 60

Query: 61  MVSDASSGPPHLFEDEACSHEDDAHFSHASKSATLGKRKGKKQKIKEYQCHDQPSSFLDD 120
           MVSDASSGPPH FEDEACSHEDD HFSHASKS T  K KGKKQKI EYQCHDQPSSFLDD
Sbjct: 61  MVSDASSGPPHFFEDEACSHEDDGHFSHASKSVTPEKNKGKKQKITEYQCHDQPSSFLDD 120

Query: 121 TASSPAHNFTANNFTNQASMESFLGFSQTSHFEERSAFTEHFGFLQSSLSGNRLQKNQWF 180
           TASSPAHNFTANNFTNQ SMESFLG SQTSHFEERS+FTEHFGFLQSSLSGNRLQKNQWF
Sbjct: 121 TASSPAHNFTANNFTNQGSMESFLGLSQTSHFEERSSFTEHFGFLQSSLSGNRLQKNQWF 180

Query: 181 EEKGIGMR 189
           E KGIGMR
Sbjct: 181 EGKGIGMR 188

[Close]

BLAST of Lag0019707 vs. NCBI nr
Match: XP_022149141.1 (uncharacterized protein LOC111017634 [Momordica charantia])

HSP 1 Score: 328.2 bits (840), Expect = 4.7e-86
Identity = 163/190 (85.79%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 1   MDLLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKAT--EEEEEVED 60
           MDLLGSECSSGCESGWTLYLE SFLSHGGSD +VG E GFCDGYWKAKA+  EEEEEVED
Sbjct: 1   MDLLGSECSSGCESGWTLYLEQSFLSHGGSDRMVGGEGGFCDGYWKAKASEEEEEEEVED 60

Query: 61  LSMVSDASSGPPHLFEDEACSHEDDAHFSHASKSATLGKRKGKKQKIKEYQCHDQPSSFL 120
           LSMVSDASSGPPH  ED+ACSHE+D HFS ASKSATLGKRKGKKQKIKEYQ H+  SSFL
Sbjct: 61  LSMVSDASSGPPHFIEDDACSHEEDGHFSRASKSATLGKRKGKKQKIKEYQFHEPSSSFL 120

Query: 121 DDTASSPAHNFTANNFTNQASMESFLGFSQTSHFEERSAFTEHFGFLQSSLSGNRLQKNQ 180
           DDTASSPA NFT NNFTNQASM+SF+ FSQTSHFEERSAFT+HFGFLQSSLSGNR+QKNQ
Sbjct: 121 DDTASSPALNFTPNNFTNQASMDSFMDFSQTSHFEERSAFTDHFGFLQSSLSGNRMQKNQ 180

Query: 181 WFEEKGIGMR 189
           WFE KG+GMR
Sbjct: 181 WFEGKGMGMR 190

[Close]

BLAST of Lag0019707 vs. ExPASy Swiss-Prot
Match: Q8L9K4 (Protein SOB FIVE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SOFL5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14
Identity = 68/181 (37.57%), Postives = 98/181 (54.14%), Query Frame = 0


Query: 3   LLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKAT--------EEEE 62
           +LGS  SSGCESGWTLYL+ S  S   S     R+S   D   ++K +        EEEE
Sbjct: 1   MLGS--SSGCESGWTLYLDQSVSSPSPS---CFRDSNGFDSRRRSKDSWDQNYVHQEEEE 60

Query: 63  EVEDLSMVSDASSGPPHLFEDEACSHEDDAHFSHASKSATLGKRKGKKQKIKEYQCHDQP 122
           E +DLSM+SDASSGP ++ E+++             K   +G +K  K++ K+ + +++ 
Sbjct: 61  EEDDLSMISDASSGPRNISEEDS-----------VKKINIVGLKKQCKRE-KKRRDYEKM 120

Query: 123 SSFLDDTASSPAHNF-------TANNFTNQASMESFLGFSQ---TSHFEERSAFTEHFGF 166
           +S LDDTASSP  NF          N   Q   ES L +SQ    + F++++AF E  G+
Sbjct: 121 NSLLDDTASSPLFNFPHMLQKSVGGNKIEQTFPESTLDYSQGFSATQFQDKTAFQEQCGY 164

[Close]

BLAST of Lag0019707 vs. ExPASy Swiss-Prot
Match: B6IDH8 (Protein SOB FIVE-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=SOFL6 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 56/177 (31.64%), Postives = 81/177 (45.76%), Query Frame = 0


Query: 1   MDLLGSECSSGCESGWTLYLEHSFLSHGGSDHIVGRESGFCDGYWKAKATEEEEEVEDLS 60
           MD    + S   +SGWT+YL H   S   S H     +G            ++E  ED S
Sbjct: 1   MDFSDLDYSDAGDSGWTMYLGH---SSSVSLHHFDYHNG----------ETKQEHDEDSS 60

Query: 61  MVSDASSGPPHLFEDEACSHED--DAHFSHASKSATLGKRKGKKQKIKEYQCHDQPSSFL 120
           MVSDASSGPP+  E+    HED    +  +  KS +  K K KK+  +E    ++ +S  
Sbjct: 61  MVSDASSGPPYYCEETV--HEDHLQQNTQYWCKSKSKNKNKNKKKVHEEQGYSERFNSSF 120

Query: 121 DDTASS-PAHNFTANNFTNQASMESFLGFSQTSHFEERSAFTEHFGFLQSSLSGNRL 175
           DDTASS P     + +  +Q   + F  F Q+           + GFLQ +   ++L
Sbjct: 121 DDTASSLPVGEEVSAHKQHQNQYQRFHDFCQSYSTRRICKEKVNSGFLQQAFPVDKL 162

The following BLAST results are available for this feature:

BLAST of Lag0019707 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600277.1	2.9e-91	90.43	hypothetical protein SDJN03_05510, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530436.1	2.4e-90	89.36	uncharacterized protein LOC111792982 [Cucurbita pepo subsp. pepo]	[more]
XP_022993429.1	9.2e-90	89.36	uncharacterized protein LOC111489443 [Cucurbita maxima]	[more]
XP_022941980.1	9.2e-90	89.36	uncharacterized protein LOC111447186 [Cucurbita moschata]	[more]
XP_022149141.1	4.7e-86	85.79	uncharacterized protein LOC111017634 [Momordica charantia]	[more]

BLAST of Lag0019707 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9K4	2.9e-14	37.57	Protein SOB FIVE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SOFL5 PE=2 SV=1	[more]
B6IDH8	2.3e-06	31.64	Protein SOB FIVE-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=SOFL6 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044670	SOB-five-Like (SOFL) family	PANTHER	PTHR33347	OSJNBA0091C07.3 PROTEIN	coord: 1..172
None	No IPR available	PANTHER	PTHR33347:SF1	OSJNBA0091C07.3 PROTEIN	coord: 1..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019707.1	Lag0019707.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0009691	cytokinin biosynthetic process
biological_process	GO:0009690	cytokinin metabolic process