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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAACATGAGCAAGAACGTCGTCATCGTGCTAGCAATGGCAGTCATGCTGCTCGTGGCCACTTCGACCGAAGCAGCCATTACTAGTAAGGTGTGTGTACGTGTTAGATCACCACTAGACTCAAACATTTAAGTTGATAGATTACGATAAATTTTAAAGTTGTATTTATATTCTTGACTAGGAGTTTAACCAAGTGATCGAACTCCGTTCCGATGAGACGAGCGGAGTTGGTTCGGACAGGGACACTTCCTCAAGAAAAATGTTGAAAAATGGAGCAGTAGTTGGGAATATTGTGGTATGCCCATCCCAAGGCGCCCCATGTCTCGGCGATGATTACTGTCTTCCTGGGTGCTTCTGTGATTACTCCCGACCAGTGAAACTGGGATTCTGCAATAGTTTGGTTGAATGA mRNA sequence ATGAACATGAGCAAGAACGTCGTCATCGTGCTAGCAATGGCAGTCATGCTGCTCGTGGCCACTTCGACCGAAGCAGCCATTACTAGTAAGGAGTTTAACCAAGTGATCGAACTCCGTTCCGATGAGACGAGCGGAGTTGGTTCGGACAGGGACACTTCCTCAAGAAAAATGTTGAAAAATGGAGCAGTAGTTGGGAATATTGTGGTATGCCCATCCCAAGGCGCCCCATGTCTCGGCGATGATTACTGTCTTCCTGGGTGCTTCTGTGATTACTCCCGACCAGTGAAACTGGGATTCTGCAATAGTTTGGTTGAATGA Coding sequence (CDS) ATGAACATGAGCAAGAACGTCGTCATCGTGCTAGCAATGGCAGTCATGCTGCTCGTGGCCACTTCGACCGAAGCAGCCATTACTAGTAAGGAGTTTAACCAAGTGATCGAACTCCGTTCCGATGAGACGAGCGGAGTTGGTTCGGACAGGGACACTTCCTCAAGAAAAATGTTGAAAAATGGAGCAGTAGTTGGGAATATTGTGGTATGCCCATCCCAAGGCGCCCCATGTCTCGGCGATGATTACTGTCTTCCTGGGTGCTTCTGTGATTACTCCCGACCAGTGAAACTGGGATTCTGCAATAGTTTGGTTGAATGA Protein sequence MNMSKNVVIVLAMAVMLLVATSTEAAITSKEFNQVIELRSDETSGVGSDRDTSSRKMLKNGAVVGNIVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCNSLVE
Homology
BLAST of Lag0019695 vs. NCBI nr
Match: KAE8649030.1 (hypothetical protein Csa_015018 [Cucumis sativus]) HSP 1 Score: 61.2 bits (147), Expect = 6.0e-06 Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 0
Query: 1 MNMSKNVVIVLAMAVMLLVATSTEAAITSKEFNQVIELRSDETSG-VGSDRDTSSRKMLK 60
M M K V + LAMAV++L+ S A TS E VIEL SDE S V ++ + SRKM+K
Sbjct: 2 MEMRKKVGL-LAMAVLMLMVISARA--TSSEVGGVIELPSDEASEVVPTNMEMWSRKMMK 61
Query: 61 NGAVVGNIVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCN 102
G G+ +C G PC D CL GC C + +KLG C+
Sbjct: 62 EGGRKGDNGLCLIIGTPCNSDANCLSGCKCRTTLILKLGLCS 100
BLAST of Lag0019695 vs. NCBI nr
Match: TYK29461.1 (hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa]) HSP 1 Score: 58.9 bits (141), Expect = 3.0e-05 Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 0
Query: 3 MSKNVVIVLAMAVMLLVATSTEAAITSKEFNQVIELRSDETS-GVGSDRDTSSRKMLKNG 62
MSK V + LAMAV++L+A S A TS E ++VIEL SDE + V ++ + SRKM+K G
Sbjct: 5 MSKKVGL-LAMAVLMLMAIS--AGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMKEG 64
Query: 63 AVVGN-IVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCN 102
G+ +C G PC D+ C GC C + +KLG C+
Sbjct: 65 DRKGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGICS 102
BLAST of Lag0019695 vs. NCBI nr
Match: KAA0044332.1 (hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa]) HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05 Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 0
Query: 3 MSKNVVIVLAMAVMLLVATSTEAAITSKEFNQVIELRSDETS-GVGSDRDTSSRKMLKNG 62
MSK V LAMAV++L+A S A TS E ++VIEL SDE + V ++ + SRKM+K G
Sbjct: 5 MSKKVGF-LAMAVLMLMAIS--AGATSSEVDEVIELPSDEANMVVATNMEMWSRKMMKEG 64
Query: 63 AVVGN-IVVCPSQGAPCLGDDYCLPGCFCDYSRPVKLGFCN 102
G+ +C G PC D+ C GC C + +KLG C+
Sbjct: 65 DRKGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGICS 102
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8649030.1 | 6.0e-06 | 44.12 | hypothetical protein Csa_015018 [Cucumis sativus] | [more] |
| TYK29461.1 | 3.0e-05 | 43.56 | hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa] | [more] |
| KAA0044332.1 | 5.1e-05 | 43.56 | hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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