Lag0019672 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019672
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	zinc finger SWIM domain-containing protein 7
Location	chr5: 44374230 .. 44376526 (-)
RNA-Seq Expression	Lag0019672
Synteny	Lag0019672

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCGAGTACTCAGGTAGCTGAAGCAGTGTGGAAGCAGATCGAGTCGACTCGATCAGGTTGTGGTTTTCATTCCCTCATCTTCGAATTTTTGTCTTCAAAAAGTAATTGTTTCCTTCTTTTTGTTCTCAATCTGGTGTTAAATTGACGGTGTCTTTGCTAAAAGAAGTTGAAACTGATTTCCGCAGTGACCGATGATCAGCTTTCAGTGTGAGTGTTCTCGATTCTTTCCATTTGGATAAGATCTTCTTTGTTTTGTTGTGTTCGTGGAACTTTGAGGTTGATTGTGTCGGTGCTGGTGCAGCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGGATTGTGGATCAAAGAGGGGTGAAGAAAATTTTTGGGGAGCCAAGCAGACGCTCCATCTTTCAGGTCTTTTCTGTATTTTTCATCTTGTTTTTGTTGAAAATAGGATCAAATATCGTTTTTAAGTTCCCCAAATTGAAGATACTGTTTGGGTTTGCTGGAGTGCCCTAAAATAGAATGTATTTAAGTTCTGTTCTGTTTAAAGCCTCACTGATGAATAGTCTGGAGAATGGAAACCATGTTTTTCTCAATCTCTCTAGAGATGGAGAAAGATTTACCCGAAGGTTTAAGAATGTTTTGTATATATACTTCTTAATACTCCCATCATTTTGGGGTTCAAAGCTAGCATGAAACTAGAAAGTTGGAGAAGGAATGACATTGTAGAAATTTAACCATCATGGATTGGCCTAGTGGTCAATAAGGATCCTGAGAAAAATAAAGGGCTTAAAGGGAATGAGTTCAATCAATAATGACCACCAATCTAGGATTTTATATCCTACATGTATCCTGACAACCAAATGTAACAAGGTCAGACGGTTGTCCCGTGAGATTAGTTAATGTGCGTGCAAGTTGGCCCGGACACTCATGGATATCAAAAAACAGACATCGTAGAAGTTTGTTGGTTTGATAACATATTAACATGTACTATGTATCACTAAACCTAAAGCTTAATATTAAGAATATGAATATGAGATTAAATACTATAACCTATCGAGTCTTGATTTAATAGAGTATCAGTGTCGGCTCTTTCGGCTCATAGCACCATTTTTCAAAGTGGAACCCTCATCCCATGTCAAGTTTGCTTTGCTATATGAATCAACATCGGGCAAACCAAGAGTTTCCCAACTAAAATGGATCCAATGGTTTTGAGAAAACCAACCTCTTTAAAAAGAAGAAGCTATTCTAACTTCCATGGATTGACTTGGTGGTCATGGTCAATGAGAGTCAATGAAGCTTAGAGGAATGGGTTTAAGTCAGGGTGGTCACCTATGTTGGATTAATACCCTATGAGTTTCCTTGACAACCAAATGTAAACCAAATGTAGTAATGTCAGATGGTTGTCCCATGGGATTATTCGAGTTATGTGTAAGTGATCTGAACATCACAAATATTAAAAAAAAAAAGGAAAGAAAAAAGAAAGGAACTACATAACCATGGGCATACATTGCACCCACTTTATCTTCACCTACTGTGAAAAAACAACTTGTGTCCAAATCTCTATAATATCTTTTCCTCTTCAATCAATATTGGTAGTTACTTAACAGGTATTTTGCTAATTTTCAAGCTCGCAAATAAGAAGGAAGGTTAAGAATATGAATAAGAGATTAAGAATTCAGTAGCTAAATTTTTTGGTTTACTAGTGGTTTAATACTCAAGATGATTGATTATGGTTATTTAGAGCATGTTTGGGAATGATTTTGAAAATGGGAACTCACTCTTGTCATGTCCAAAATCACTAAAGGGCATGACAAAAGTGATTTTGGCTATTCCAAAATCATTCCCAAACATGTCTTTAATCTTTTGTATATGTTCTTGACAAGATTTTCTCAAAATCTTTTGACTTAAGTACTTCTAAACTTTGAGAATCATTCAGAAAATGAGTTCTATTTTCTTTCAATGTTAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATTTCTGTTTCCCAGAAAACTTTTGTGCTTGTTATTCTTTCTTCTATGACATTGTGAATAGAGGAGAACAACTTTGTGTAAGAACTAGTTCGTTCTTAATAATATGTAGTGTAGCTGAGATGAAGCTTGAAGAAAATCTTATTCCTTCCACTTCCCAATTATCTTTCTTTTCTGCTTCTTTCTTTCTTTTGTAGTGCAAGCATCAGTTAGCTGCAAGGCTTGCTGCTTCACTGGGGTCTTGCATTGAAGTTAAAGTGTCTGATGAAGAGCTGGCAATATTATTATCCAATCTTTAA

mRNA sequence

ATGAGTGCGAGTACTCAGGTAGCTGAAGCAGTGTGGAAGCAGATCGAGTCGACTCGATCAGTGACCGATGATCAGCTTTCAGTCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGGATTGTGGATCAAAGAGGGGTGAAGAAAATTTTTGGGGAGCCAAGCAGACGCTCCATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATTTCTGTTTCCCAGAAAACTTTTGTGCTTGTTATTCTTTCTTCTATGACATTGTGAATAGAGGAGAACAACTTTGTTGCAAGCATCAGTTAGCTGCAAGGCTTGCTGCTTCACTGGGGTCTTGCATTGAAGTTAAAGTGTCTGATGAAGAGCTGGCAATATTATTATCCAATCTTTAA

Coding sequence (CDS)

ATGAGTGCGAGTACTCAGGTAGCTGAAGCAGTGTGGAAGCAGATCGAGTCGACTCGATCAGTGACCGATGATCAGCTTTCAGTCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACTCGGATTGTGGATCAAAGAGGGGTGAAGAAAATTTTTGGGGAGCCAAGCAGACGCTCCATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATTTCTGTTTCCCAGAAAACTTTTGTGCTTGTTATTCTTTCTTCTATGACATTGTGAATAGAGGAGAACAACTTTGTTGCAAGCATCAGTTAGCTGCAAGGCTTGCTGCTTCACTGGGGTCTTGCATTGAAGTTAAAGTGTCTGATGAAGAGCTGGCAATATTATTATCCAATCTTTAA

Protein sequence

MSASTQVAEAVWKQIESTRSVTDDQLSVLHFLFGKNFERATRIVDQRGVKKIFGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKVSDEELAILLSNL

Homology

[Close]

BLAST of Lag0019672 vs. NCBI nr
Match: XP_022983272.1 (zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima] >XP_022983279.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima] >XP_022983286.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 125/132 (94.70%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MSASTQVAEAVWKQIESTRSVTDDQLSVLHFLFGKNFERATRIVDQRGVKKIFGEPSRRS 60
           MSAST VAEAVWKQIESTRSVTDDQLS+LHFLFGKNFERATRIVDQ GVKKI GEPS RS
Sbjct: 1   MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRS 60

Query: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKV 120
           IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLG+C+EVKV
Sbjct: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACVEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of Lag0019672 vs. NCBI nr
Match: XP_022942858.1 (zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata] >XP_022942859.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MSASTQVAEAVWKQIESTRSVTDDQLSVLHFLFGKNFERATRIVDQRGVKKIFGEPSRRS 60
           MSAST  AEAVWKQIESTRSVTDDQLS+LHFLFGKNFERATRIVDQ GVKKI GEPS RS
Sbjct: 1   MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRS 60

Query: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKV 120
           IFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLG+CIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of Lag0019672 vs. NCBI nr
Match: XP_008454376.1 (PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 123/132 (93.18%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MSASTQVAEAVWKQIESTRSVTDDQLSVLHFLFGKNFERATRIVDQRGVKKIFGEPSRRS 60
           MSAS  VAEAVWK+IESTR VTDDQLS+LHFLFGKNFERATRIVDQRGVKKI G PSRRS
Sbjct: 1   MSASIVVAEAVWKRIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSRRS 60

Query: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKV 120
           IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAAS+G+CIEVKV
Sbjct: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of Lag0019672 vs. NCBI nr
Match: KAG7030956.1 (Zinc finger SWIM domain-containing protein 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MSASTQVAEAVWKQIESTRSVTDDQLSVLHFLFGKNFERATRIVDQRGVKKIFGEPSRRS 60
           MSAST  AEAVWKQIESTRSVTDDQLS+LHFLFGKNFERATRIVDQ GVKKI GEPS RS
Sbjct: 1   MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRS 60

Query: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKV 120
           +FQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLG+CIEVKV
Sbjct: 61  VFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of Lag0019672 vs. NCBI nr
Match: KAG6600296.1 (Zinc finger SWIM domain-containing protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.1 bits (632), Expect = 4.4e-62
Identity = 123/132 (93.18%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MSASTQVAEAVWKQIESTRSVTDDQLSVLHFLFGKNFERATRIVDQRGVKKIFGEPSRRS 60
           MSAST  AEAVWKQIESTRSVTDDQLS+LHFLFGKNFERATRIVDQ GVKKI G+PS RS
Sbjct: 1   MSASTLAAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGDPSGRS 60

Query: 61  IFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKV 120
           IFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLG+CIEVKV
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGACIEVKV 120

Query: 121 SDEELAILLSNL 133
           SDEELAILLSNL
Sbjct: 121 SDEELAILLSNL 132

[Close]

BLAST of Lag0019672 vs. ExPASy Swiss-Prot
Match: Q19AV6 (Zinc finger SWIM domain-containing protein 7 OS=Homo sapiens OX=9606 GN=ZSWIM7 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 34/116 (29.31%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 15  IESTRSVTDDQLSVLHFLFGKNFERATRIVDQRGVKKIFGEPSRRSIFQVVGESRRKEEY 74
           ++ +  + D+ L  L FLFG +  +A  +VD++ +  +   PS R ++QV+G S   + Y
Sbjct: 20  VQESARIPDEYLLSLKFLFGSSATQALDLVDRQSI-TLISSPSGRRVYQVLGSS--SKTY 79

Query: 75  FCFPE-NFCACYSFFYDIVNRGEQLCCKHQLAARLAASLGSCIEVKVSDEELAILL 130
            C    ++C+C +F + ++ + + + CKH LA  L+  + +C ++ VSD++L  +L
Sbjct: 80  TCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQLSVSDKQLTDIL 132

The following BLAST results are available for this feature:

BLAST of Lag0019672 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983272.1	1.8e-63	94.70	zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima] >XP_0...	[more]
XP_022942858.1	2.0e-62	93.94	zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata] >XP...	[more]
XP_008454376.1	2.6e-62	93.18	PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]	[more]
KAG7030956.1	2.6e-62	93.18	Zinc finger SWIM domain-containing protein 7 [Cucurbita argyrosperma subsp. argy...	[more]
KAG6600296.1	4.4e-62	93.18	Zinc finger SWIM domain-containing protein 7, partial [Cucurbita argyrosperma su...	[more]

BLAST of Lag0019672 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q19AV6	2.1e-11	29.31	Zinc finger SWIM domain-containing protein 7 OS=Homo sapiens OX=9606 GN=ZSWIM7 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR28498	ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7	coord: 2..131
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 62..111 score: 8.159615

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019672.1	Lag0019672.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0097196	Shu complex
molecular_function	GO:0008270	zinc ion binding