Lag0019560 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019560
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cx9C motif-containing protein 4
Location	chr5: 43339587 .. 43341573 (-)
RNA-Seq Expression	Lag0019560
Synteny	Lag0019560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCAGCCGAGCAAAGAACCCTGCAAGAAGGAGGCGTGCGAAATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAAGTAAGTTCAGATTAAGATTTTTCTTTTGTGTTCTGCGACGAAACAATCTGAAGTTTTTGGGCTGCTCATCGATGTTGAATGTCGTTCGTTTGAGTTATTTGCGTGAATCGGAGGATAGAAGGATTCAATGTGATTTTTTTTCCCTTTCTTTGTTTACCTGTATCTCTTAACGAAACTCTGGACTGCTATGTATTCTTTCTGTTTTGTGCTTTTTGTTTTTCTTTCCTTTGAATCATCTATAATCTCCCTTCGCAGTGGGATCAAGCAAAAAATAAATTAAACAATAAAACAGAAAAGCTTTTCGGTTCGATTCCTCTGTGGAAAGCATTTGGGTTTTTATTTTCTCTATGTTTGTTCCGTTTTCTTCTCTTCGTGTTTGGTTCATTGACTGAGGTACTTAGACCAAGTATTATGATCCTTGATTTGGGAATTTTCGGATAGCTTACGGAGTTCTGTTGTATCCGTGCGTATGAAATTTGTGTTTTCATGTACTACTAATCTGGTATTTAAAGGTAAAGCGTATTTCCCGCGTTCTGAAGATCAATCTTCATATTCTCCATCTTCTTTTTTCCCTCAATAGGTTGCTCGGTCCCGATCGATGTCTTCATGATTATAAATCATGCCATTCTTCTTCAAATATATATATTTATATATTTGTGTGTCAGTAGTTCCTAAATGCAATTGAATTGAAGATGAATCTGACGTCTATTCATTTTCACAAAGAGGTAAAAATCGAAGGAAGCTTTTCAATAGCGTTATGGTTGCTTATGGACTATTTACTTCTCATCCAGCCGGTATATATTCTACTCTGAATTTCAGCCCCTTTAATTAGTTCTTGAAGATCACCAAACTTCCACATTTCCTAGTTCTTCTTGTTTATTTGGGTACCAGAGCGATTTGTTTGTTTGATTATCCTCTATTATTTCCTGTCAGGGATCTGGGAATTTACTGAGAACCATATGTTTAAATGAAGTCTGATTTGGTTGCTGTGAGGTCACAATCAATATCTGTTTGTGAAAGCACAGACATGATTATTAGGTTTTTGAGTCCCCTTTGTAGCAGAGAAAGTAAAGCATAACCATTAGTAGAGTACACACACAGTTTCCAATTTCTAACTTTCTCCTTTCTTCCTCCCTTTCCCTTATTTGATTTCTTTTCATGGTTATCAAGGTTGGTGTGTTCTGAATAGAAGTATGAATTGAGTTTGACAGGTTTTATGTTCGAGTGGATATTGATTTTTTTTTTTGGTGTACTGCTTACTGTATACATAAGGTGTCTGTTGTAGTTCTACCATTATCTTCTGATCAGTAAGAAGTCGGATTTTGTTTCAGTATATTCCAAGTGGTGTGATTCTTGGAATACTTGCTTGCTGACCTAATTCATGAGAAATGCTGTTTTAAACTTCAAAAATAATTCAGGGGGAATGCTGATCAACAAAATAATTCCACGCAAGAGAACGTACCCTTAGGGGGTAGTAATCCATCCCCATCTCCAAAAAAGCTAAACAGGTAAAGATAGAAGAAGCAGCATGGATTCATTATTTTCTAATCTTCCTGGAAGTAGTTAATAATGAAGTAGACCAAAAAAAACCCTGGCTTTGGGATTCAACCAGGGACTGTAAACATCTTCATGAGAAATTCTTCATCCCAAGGGGTATGATCAGACCTAGCACAAAGCTTTCCCCTAATGAAAACATCTTCATCCGAAGTTCTCCTAGCAAAAATGCCGTGGATATAGGTGATCAGTACAATTTTACTTTGCATAACGCACATCCTCAAGTATTTATGTAGATACTGGGATAAGACTTTTTGAACCCTCTGAGAGCAAGAAGAGGACCAGGTAAGGAAGTTGATATTCTTGGCATTCTTTTCAATTTCCAGATCAGTGATGGTGCTGCTTAA

mRNA sequence

ATGCCTCAGCCGAGCAAAGAACCCTGCAAGAAGGAGGCGTGCGAAATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAAGGGGAATGCTGATCAACAAAATAATTCCACGCAAGAGAACGTACCCTTAGGGGGTAGTAATCCATCCCCATCTCCAAAAAAGCTAAACAGGGACTGTAAACATCTTCATGAGAAATTCTTCATCCCAAGGGGTATGATCAGACCTAGCACAAAGCTTTCCCCTAATGAAAACATCTTCATCCGAAGTTCTCCTAGCAAAAATGCCGTGGATATAGGTGATCAGTACAATTTTACTTTGCATAACGCACATCCTCAAATCAGTGATGGTGCTGCTTAA

Coding sequence (CDS)

ATGCCTCAGCCGAGCAAAGAACCCTGCAAGAAGGAGGCGTGCGAAATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAAGGGGAATGCTGATCAACAAAATAATTCCACGCAAGAGAACGTACCCTTAGGGGGTAGTAATCCATCCCCATCTCCAAAAAAGCTAAACAGGGACTGTAAACATCTTCATGAGAAATTCTTCATCCCAAGGGGTATGATCAGACCTAGCACAAAGCTTTCCCCTAATGAAAACATCTTCATCCGAAGTTCTCCTAGCAAAAATGCCGTGGATATAGGTGATCAGTACAATTTTACTTTGCATAACGCACATCCTCAAATCAGTGATGGTGCTGCTTAA

Protein sequence

MPQPSKEPCKKEACEIQACLSKNNFLPHKGNADQQNNSTQENVPLGGSNPSPSPKKLNRDCKHLHEKFFIPRGMIRPSTKLSPNENIFIRSSPSKNAVDIGDQYNFTLHNAHPQISDGAA

Homology

[Close]

BLAST of Lag0019560 vs. NCBI nr
Match: XP_023539532.1 (cx9C motif-containing protein 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MPQPSKEPCKKEACEIQACLSKNNFLPHK 30
          MPQPSKEPCKKEAC+IQACLSKNNFLPHK
Sbjct: 13 MPQPSKEPCKKEACDIQACLSKNNFLPHK 41

[Close]

BLAST of Lag0019560 vs. NCBI nr
Match: XP_022983557.1 (cx9C motif-containing protein 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MPQPSKEPCKKEACEIQACLSKNNFLPHK 30
          MPQPSKEPCKKEAC+IQACLSKNNFLPHK
Sbjct: 15 MPQPSKEPCKKEACDIQACLSKNNFLPHK 43

[Close]

BLAST of Lag0019560 vs. NCBI nr
Match: XP_022136460.1 (cx9C motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MPQPSKEPCKKEACEIQACLSKNNFLPHK 30
          MPQPSKEPCKKEAC+IQACLSKNNFLPHK
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHK 29

[Close]

BLAST of Lag0019560 vs. NCBI nr
Match: XP_008456041.1 (PREDICTED: cx9C motif-containing protein 4 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MPQPSKEPCKKEACEIQACLSKNNFLPHK 30
          MPQPSKEPCKKEAC+IQACLSKNNFLPHK
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHK 29

[Close]

BLAST of Lag0019560 vs. NCBI nr
Match: XP_022942264.1 (cx9C motif-containing protein 4 [Cucurbita moschata] >KAG6600374.1 Cx9C motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031034.1 Cx9C motif-containing protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-07
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MPQPSKEPCKKEACEIQACLSKNNFLPHK 30
          MPQPSKEPCKKEAC+IQACLSKNNFLPHK
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHK 29

The following BLAST results are available for this feature:

BLAST of Lag0019560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539532.1	4.8e-07	96.55	cx9C motif-containing protein 4, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022983557.1	4.8e-07	96.55	cx9C motif-containing protein 4, mitochondrial [Cucurbita maxima]	[more]
XP_022136460.1	4.8e-07	96.55	cx9C motif-containing protein 4 [Momordica charantia]	[more]
XP_008456041.1	4.8e-07	96.55	PREDICTED: cx9C motif-containing protein 4 [Cucumis melo]	[more]
XP_022942264.1	4.8e-07	96.55	cx9C motif-containing protein 4 [Cucurbita moschata] >KAG6600374.1 Cx9C motif-co...	[more]

BLAST of Lag0019560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.1130	CytochromE C oxidase copper chaperone	coord: 3..40 e-value: 9.3E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..55
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 5..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019560.1	Lag0019560.1	mRNA