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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCACGGCGGCGCAATGAAGAAGACTCGCCTGAATCCCGAACCCAGTTCCCCTTCCTCAGTGTCTCTACCCCCTCTTCTCGACTCATCTCCCTACCCCTCCGCCGCCTTCGCCGACCGCGACGGCAGCAGCTCTCTCGACGACTCAACGGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACCTCAACCACTTCGCCGCCGGGGAAGCGGGCGGCGGCCCTGATCTCTCGGCCTCGGCGTTCCCGAACCTCCGGAGCCTCCAGGAGAATCTGCAGCCGGCGTTCTTCTCCCCCGTGGGTCCGCCGCTGGTTCATCTCCTGGCCGGCGGCGGCGACTTGGATGGGTGCGGCGGTGCTCCGGTGCCGGAGGAATCTAGGCTTATGGGTTCGGCTGACATGGGTGCTTATTATATGTGGACCTTCTGA mRNA sequence ATGCACGGCGGCGCAATGAAGAAGACTCGCCTGAATCCCGAACCCAGTTCCCCTTCCTCAGTGTCTCTACCCCCTCTTCTCGACTCATCTCCCTACCCCTCCGCCGCCTTCGCCGACCGCGACGGCAGCAGCTCTCTCGACGACTCAACGGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACCTCAACCACTTCGCCGCCGGGGAAGCGGGCGGCGGCCCTGATCTCTCGGCCTCGGCGTTCCCGAACCTCCGGAGCCTCCAGGAGAATCTGCAGCCGGCGTTCTTCTCCCCCGTGGGTCCGCCGCTGGTTCATCTCCTGGCCGGCGGCGGCGACTTGGATGGGTGCGGCGGTGCTCCGGTGCCGGAGGAATCTAGGCTTATGGGTTCGGCTGACATGGGTGCTTATTATATGTGGACCTTCTGA Coding sequence (CDS) ATGCACGGCGGCGCAATGAAGAAGACTCGCCTGAATCCCGAACCCAGTTCCCCTTCCTCAGTGTCTCTACCCCCTCTTCTCGACTCATCTCCCTACCCCTCCGCCGCCTTCGCCGACCGCGACGGCAGCAGCTCTCTCGACGACTCAACGGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACCTCAACCACTTCGCCGCCGGGGAAGCGGGCGGCGGCCCTGATCTCTCGGCCTCGGCGTTCCCGAACCTCCGGAGCCTCCAGGAGAATCTGCAGCCGGCGTTCTTCTCCCCCGTGGGTCCGCCGCTGGTTCATCTCCTGGCCGGCGGCGGCGACTTGGATGGGTGCGGCGGTGCTCCGGTGCCGGAGGAATCTAGGCTTATGGGTTCGGCTGACATGGGTGCTTATTATATGTGGACCTTCTGA Protein sequence MHGGAMKKTRLNPEPSSPSSVSLPPLLDSSPYPSAAFADRDGSSSLDDSTEHELHVTCFSTNNLNHFAAGEAGGGPDLSASAFPNLRSLQENLQPAFFSPVGPPLVHLLAGGGDLDGCGGAPVPEESRLMGSADMGAYYMWTF
Homology
BLAST of Lag0019534 vs. NCBI nr
Match: XP_023543274.1 (protein CUP-SHAPED COTYLEDON 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50 Identity = 112/153 (73.20%), Postives = 125/153 (81.70%), Query Frame = 0
Query: 1 MHGGAMKKTRLNPEPSSPSSVSLPPLLDSSPYPSA---------AFADRDGSSSLDDSTE 60
MHGG MKKTR +PEP+SPSSVSLPPLLDSSPY SA AFA+R+G SSLDD E
Sbjct: 172 MHGGVMKKTRRDPEPTSPSSVSLPPLLDSSPYLSAAADTSISTSAFANREG-SSLDDQRE 231
Query: 61 HELHVTCFSTNNLNHFAAG-EAGGGPDLSASAFPNLRSLQENLQPAFFSPVGPPLVHLLA 120
HELHVTCFSTNNL++ AA AGGGP+LS SAFPNLRS+QENLQ FFSPV PPLVHLL+
Sbjct: 232 HELHVTCFSTNNLSYPAASFPAGGGPNLSVSAFPNLRSIQENLQAPFFSPVSPPLVHLLS 291
Query: 121 GGGDLDGCGGAPVPEESRLMGSADMGAYYMWTF 144
G D+DGCGGAP PE+SR +GSAD+GA YMWTF
Sbjct: 292 GAADVDGCGGAPSPEDSRTIGSADLGA-YMWTF 322
BLAST of Lag0019534 vs. NCBI nr
Match: KAG6600382.1 (Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 208.4 bits (529), Expect = 4.2e-50 Identity = 111/153 (72.55%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 1 MHGGAMKKTRLNPEPSSPSSVSLPPLLDSSPY---------PSAAFADRDGSSSLDDSTE 60
MHGG MKKTR +PEP+SPSSVSLPPLLDSSPY ++AFA+RDG SSLDD E
Sbjct: 167 MHGGVMKKTRRDPEPTSPSSVSLPPLLDSSPYLYAAADTSISTSAFANRDG-SSLDDQRE 226
Query: 61 HELHVTCFSTNNLNHFAAG-EAGGGPDLSASAFPNLRSLQENLQPAFFSPVGPPLVHLLA 120
HELHVTCFSTNNL++ AA AGGG +LS SAFPNLRS+QENLQ FFSPV PPLVHLL+
Sbjct: 227 HELHVTCFSTNNLSYPAASFPAGGGHNLSVSAFPNLRSIQENLQAPFFSPVSPPLVHLLS 286
Query: 121 GGGDLDGCGGAPVPEESRLMGSADMGAYYMWTF 144
G D+DGCGGAP PE+SR MGSAD+GA YMWTF
Sbjct: 287 GAADVDGCGGAPSPEDSRTMGSADLGA-YMWTF 317
BLAST of Lag0019534 vs. NCBI nr
Match: KAG7031044.1 (Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 208.4 bits (529), Expect = 4.2e-50 Identity = 111/153 (72.55%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 1 MHGGAMKKTRLNPEPSSPSSVSLPPLLDSSPY---------PSAAFADRDGSSSLDDSTE 60
MHGG MKKTR +PEP+SPSSVSLPPLLDSSPY ++AFA+RDG SSLDD E
Sbjct: 172 MHGGVMKKTRRDPEPTSPSSVSLPPLLDSSPYLYAAADTSISTSAFANRDG-SSLDDQRE 231
Query: 61 HELHVTCFSTNNLNHFAAG-EAGGGPDLSASAFPNLRSLQENLQPAFFSPVGPPLVHLLA 120
HELHVTCFSTNNL++ AA AGGG +LS SAFPNLRS+QENLQ FFSPV PPLVHLL+
Sbjct: 232 HELHVTCFSTNNLSYPAASFPAGGGHNLSVSAFPNLRSIQENLQAPFFSPVSPPLVHLLS 291
Query: 121 GGGDLDGCGGAPVPEESRLMGSADMGAYYMWTF 144
G D+DGCGGAP PE+SR MGSAD+GA YMWTF
Sbjct: 292 GAADVDGCGGAPSPEDSRTMGSADLGA-YMWTF 322
BLAST of Lag0019534 vs. NCBI nr
Match: XP_022942010.1 (protein CUP-SHAPED COTYLEDON 2-like [Cucurbita moschata]) HSP 1 Score: 208.0 bits (528), Expect = 5.4e-50 Identity = 112/153 (73.20%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 1 MHGGAMKKTRLNPEPSSPSSVSLPPLLDSSPYPSA---------AFADRDGSSSLDDSTE 60
MHGG MKKTR +PEP+SPSSVSLPPLLDSSPY SA AFA+RDG SSLDD E
Sbjct: 172 MHGGVMKKTRGDPEPTSPSSVSLPPLLDSSPYLSAAADTSISTSAFANRDG-SSLDDQRE 231
Query: 61 HELHVTCFSTNNLNHFAAG-EAGGGPDLSASAFPNLRSLQENLQPAFFSPVGPPLVHLLA 120
H+LHVTCFSTNNL++ AA AGGG +LS SAFPNLRS+QENLQ FFSPV PPLVHLL+
Sbjct: 232 HQLHVTCFSTNNLSYPAASFPAGGGHNLSVSAFPNLRSIQENLQAPFFSPVSPPLVHLLS 291
Query: 121 GGGDLDGCGGAPVPEESRLMGSADMGAYYMWTF 144
G D+DGCGGAP PE+SR MGSAD+GA YMWTF
Sbjct: 292 GAADVDGCGGAPSPEDSRTMGSADLGA-YMWTF 322
BLAST of Lag0019534 vs. NCBI nr
Match: KAG6577005.1 (Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37 Identity = 93/144 (64.58%), Postives = 102/144 (70.83%), Query Frame = 0
Query: 1 MHGG-AMKKTRLNPEPSSPSSVSLPPLLDSSPYPSAAFADRDGSSSLDDSTEHELHVTCF 60
MHGG + +KTRL+PEPSSPSSVSLPPLLDSS PS EHELHVTCF
Sbjct: 175 MHGGPSTRKTRLDPEPSSPSSVSLPPLLDSSADPS----------------EHELHVTCF 234
Query: 61 STNNLNHFAAGEAGGGPDLSASAFPNLRSLQENLQPAFFSPVGPPLVHLLAGGGDLDGCG 120
STNN+N+ AGGG DLS S FP+L S QENLQ FFSPVGPPLVHLL +L GCG
Sbjct: 235 STNNVNY----PAGGGSDLSPSVFPSLLSFQENLQAPFFSPVGPPLVHLLTDAAELVGCG 294
Query: 121 GAPVPEESRLMGSADMGAYYMWTF 144
P PE+SRL+GSADM A YMWTF
Sbjct: 295 DGPAPEDSRLVGSADMAA-YMWTF 297
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023543274.1 | 1.1e-50 | 73.20 | protein CUP-SHAPED COTYLEDON 2-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6600382.1 | 4.2e-50 | 72.55 | Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| KAG7031044.1 | 4.2e-50 | 72.55 | Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. argyrospe... | [more] |
| XP_022942010.1 | 5.4e-50 | 73.20 | protein CUP-SHAPED COTYLEDON 2-like [Cucurbita moschata] | [more] |
| KAG6577005.1 | 1.1e-37 | 64.58 | Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 12..27 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..52 |
| None | No IPR available | PANTHER | PTHR31744 | PROTEIN CUP-SHAPED COTYLEDON 2-RELATED | coord: 11..63 |
| None | No IPR available | PANTHER | PTHR31744:SF131 | PROTEIN CUP-SHAPED COTYLEDON 2-LIKE | coord: 11..63
coord: 78..109 |
| None | No IPR available | PANTHER | PTHR31744 | PROTEIN CUP-SHAPED COTYLEDON 2-RELATED | coord: 78..109 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
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