Lag0019521 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019521
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr5: 42986150 .. 42987018 (+)
RNA-Seq Expression	Lag0019521
Synteny	Lag0019521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCAGAATCAATGGCGGATGAGCATGTAATGGAAGCTGAATATGGTTCTAACAGACCCACCAGTCGGAAAAGAAAGGCTGCTACAGCTGCCGACGGGAATGATGATGGCCGGCGAGCGATGCTAATGAAAAGAATTACGTTGTCTTTGACAAAGCCATCGTTTGTTCTGGGGCTTGGACCGAAGATGGTACGGGCTGAAAATCGAATTACACTGCACAATGTCTTGCACAAACTTATGAGGCAGCAAAACTGGGTGGAAGCAAGTGGAGTATTGAGCATGTTACTGAAAGGGACTTTGCGGGATAGATCTCCTATTAAGAATCGTTTGAAGTATTCGGTAATATACACAATCCCCATTTGTTTATATTTCTACTCTTTTCGTTGATTGGTTTACAATCTCGTATGTTTGTAATGGAAAACGAGGTGAAGAAATTATAAACACCATATGTGGAGAATATACTTACTGTGGACGATTTAAATTTTGTGGTTCTGGCATCCTTTGTGATAGTAAGTACATTCCAAGCTTTCTTGTTGATGGAGATATGCCATGAGCTTTATGTAGCTTTAATATTTGAACTTGTTTACTTAACTTAACTTTGTAGAATACTTTTGTGTATGTCTTAGATTACAAACAGAGATAACTGTAAAATACTGAATACTAGAGGGGGGGGGGGGTGTTAGGTAGGGGAGTTTCCTGAGCTAGAAGACTCTCAAGATGGCAAGCTGCAATGTGGTGGAGGAATATCTGGAATTTCTGTCTTTGGTGGTGGATCTGCTTCATACGGACCCTTAAAGTTGGGCATCCAGTCCTCTTTCAGTTCTATGTTCTTTCTTTCTTTACAGGATGGTAGTTTGCATTATTGA

mRNA sequence

ATGGAACCAGAATCAATGGCGGATGAGCATGTAATGGAAGCTGAATATGGTTCTAACAGACCCACCAGTCGGAAAAGAAAGGCTGCTACAGCTGCCGACGGGAATGATGATGGCCGGCGAGCGATGCTAATGAAAAGAATTACGTTGTCTTTGACAAAGCCATCGTTTGTTCTGGGGCTTGGACCGAAGATGGTACGGGCTGAAAATCGAATTACACTGCACAATGTCTTGCACAAACTTATGAGGCAGCAAAACTGGGTGGAAGCAAGTGGAGTATTGAGCATGTTACTGAAAGGGACTTTGCGGGATAGATCTCCTATTAAGAATCGTTTGAAGTATTCGGTAGGGGAGTTTCCTGAGCTAGAAGACTCTCAAGATGGCAAGCTGCAATGTGGTGGAGGAATATCTGGAATTTCTGTCTTTGGTGGTGGATCTGCTTCATACGGACCCTTAAAGTTGGGCATCCAGTCCTCTTTCAGTTCTATGTTCTTTCTTTCTTTACAGGATGGTAGTTTGCATTATTGA

Coding sequence (CDS)

ATGGAACCAGAATCAATGGCGGATGAGCATGTAATGGAAGCTGAATATGGTTCTAACAGACCCACCAGTCGGAAAAGAAAGGCTGCTACAGCTGCCGACGGGAATGATGATGGCCGGCGAGCGATGCTAATGAAAAGAATTACGTTGTCTTTGACAAAGCCATCGTTTGTTCTGGGGCTTGGACCGAAGATGGTACGGGCTGAAAATCGAATTACACTGCACAATGTCTTGCACAAACTTATGAGGCAGCAAAACTGGGTGGAAGCAAGTGGAGTATTGAGCATGTTACTGAAAGGGACTTTGCGGGATAGATCTCCTATTAAGAATCGTTTGAAGTATTCGGTAGGGGAGTTTCCTGAGCTAGAAGACTCTCAAGATGGCAAGCTGCAATGTGGTGGAGGAATATCTGGAATTTCTGTCTTTGGTGGTGGATCTGCTTCATACGGACCCTTAAAGTTGGGCATCCAGTCCTCTTTCAGTTCTATGTTCTTTCTTTCTTTACAGGATGGTAGTTTGCATTATTGA

Protein sequence

MEPESMADEHVMEAEYGSNRPTSRKRKAATAADGNDDGRRAMLMKRITLSLTKPSFVLGLGPKMVRAENRITLHNVLHKLMRQQNWVEASGVLSMLLKGTLRDRSPIKNRLKYSVGEFPELEDSQDGKLQCGGGISGISVFGGGSASYGPLKLGIQSSFSSMFFLSLQDGSLHY

Homology

[Close]

BLAST of Lag0019521 vs. NCBI nr
Match: XP_038881506.1 (uncharacterized protein LOC120073019 isoform X1 [Benincasa hispida] >XP_038881514.1 uncharacterized protein LOC120073019 isoform X1 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 5.4e-44
Identity = 98/114 (85.96%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MEPESMADEHVMEAEYGSNRPTSRKRKAATAADGNDDGRRAMLMKRITLSLTKPSFVLGL 60
           MEPE +AD  VMEAEYGSN PTSRKRKA TAADGN+DGRRA LMKRI LSLTKPSFVLGL
Sbjct: 1   MEPELIADSLVMEAEYGSNIPTSRKRKADTAADGNNDGRRATLMKRIKLSLTKPSFVLGL 60

Query: 61  GPKMVRAENRITLHNVLHKLMRQQNWVEASGVLSMLLKGTLRDRSPIKNRLKYS 115
            PKMVR ENRITL N LHKLMRQQNWVEASGVLSMLL+GTLRD SPI+NRLKYS
Sbjct: 61  APKMVRTENRITLRNALHKLMRQQNWVEASGVLSMLLQGTLRDNSPIRNRLKYS 114

[Close]

BLAST of Lag0019521 vs. NCBI nr
Match: XP_022142927.1 (uncharacterized protein LOC111012919 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-43
Identity = 93/113 (82.30%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 1   MEPESMADEHVMEAEYGSNRPTSRKRKAATAADGNDDGRRAMLMKRITLSLTKPSFVLGL 60
           MEPE MAD+HV+EAEYG N+P +RKRKA   ADG  DGRRA LMKR+TLSLTKPSFV+GL
Sbjct: 1   MEPEKMADDHVVEAEYGFNKPRNRKRKADMVADGTSDGRRATLMKRMTLSLTKPSFVMGL 60

Query: 61  GPKMVRAENRITLHNVLHKLMRQQNWVEASGVLSMLLKGTLRDRSPIKNRLKY 114
           GPKMVR ENR+TL NVL KL+RQQNWVEASGVLSMLLKGTLRDRSPIKNRLKY
Sbjct: 61  GPKMVRVENRVTLRNVLRKLLRQQNWVEASGVLSMLLKGTLRDRSPIKNRLKY 113

[Close]

BLAST of Lag0019521 vs. NCBI nr
Match: XP_004137303.2 (uncharacterized protein LOC101209917 [Cucumis sativus] >KGN53615.2 hypothetical protein Csa_014468 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-43
Identity = 96/114 (84.21%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MEPESMADEHVMEAEYGSNRPTSRKRKAATAADGNDDGRRAMLMKRITLSLTKPSFVLGL 60
           MEPE MAD  ++EAEYGSN PTSRKRKA T AD N+DGRRA LMKRI LSLT+PSFVLGL
Sbjct: 1   MEPEQMADRSMVEAEYGSNIPTSRKRKADTTADCNNDGRRATLMKRIKLSLTRPSFVLGL 60

Query: 61  GPKMVRAENRITLHNVLHKLMRQQNWVEASGVLSMLLKGTLRDRSPIKNRLKYS 115
            PKMVRAENRITL NVLHKLMRQQNWVEASGVLSMLL+GTLRD SPI+NRLKYS
Sbjct: 61  APKMVRAENRITLRNVLHKLMRQQNWVEASGVLSMLLQGTLRDNSPIRNRLKYS 114

[Close]

BLAST of Lag0019521 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 8.6e-42
Identity = 98/130 (75.38%), Postives = 102/130 (78.46%), Query Frame = 0


Query: 1   MEPESMADEHVMEAEYGSNRPTSRKRKAATAADGNDDGRRAMLMKRITLSLTKPSFVLGL 60
           MEPE MAD  VME EYGS  P SRKRKA   ADGN+D RRA LMKRI LSLTKPSFVLGL
Sbjct: 48  MEPEQMADRPVMEIEYGSIIPFSRKRKADPTADGNNDSRRATLMKRIKLSLTKPSFVLGL 107

Query: 61  GPKMVRAENRITLHNVLHKLMRQQNWVEASGVLSMLLKGTLRDRSPIKNRLKYSVGEFPE 120
            PKMVRAENRITL N LHKLMRQQNWVEASGVLSMLL+GTLRD SPI+NRLKYS G    
Sbjct: 108 APKMVRAENRITLRNALHKLMRQQNWVEASGVLSMLLQGTLRDNSPIRNRLKYSRGRARR 167

Query: 121 LEDSQDGKLQ 131
           L   Q  + Q
Sbjct: 168 LSRWQAARKQ 177

[Close]

BLAST of Lag0019521 vs. NCBI nr
Match: KAG7031054.1 (hypothetical protein SDJN02_05093 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-41
Identity = 93/115 (80.87%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MEPESMADEHVMEAEYGSNRPTSRKRKAATAADGNDDGRRAMLMKRITLSLTKPSFVLGL 60
           MEPE M D  VMEAEYGS R T RKRK  TAADG++DGRRA  MK+ITL+LTKPSFVLG+
Sbjct: 1   MEPELMGDTLVMEAEYGSERSTGRKRKPDTAADGSNDGRRAAAMKKITLALTKPSFVLGI 60

Query: 61  GPKMVRAENRITLHNVLHKLMRQQNWVEASGVLSMLLKGTLRDRSPIKNRLKYSV 116
           GPKM+RAENR TL NVL KLM QQNWVEASGVLSMLLKGTLRDRSPI+NRLKYSV
Sbjct: 61  GPKMLRAENRTTLRNVLRKLMMQQNWVEASGVLSMLLKGTLRDRSPIRNRLKYSV 115

The following BLAST results are available for this feature:

BLAST of Lag0019521 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881506.1	5.4e-44	85.96	uncharacterized protein LOC120073019 isoform X1 [Benincasa hispida] >XP_03888151...	[more]
XP_022142927.1	2.1e-43	82.30	uncharacterized protein LOC111012919 [Momordica charantia]	[more]
XP_004137303.2	3.5e-43	84.21	uncharacterized protein LOC101209917 [Cucumis sativus] >KGN53615.2 hypothetical ...	[more]
TYK19563.1	8.6e-42	75.38	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
KAG7031054.1	2.5e-41	80.87	hypothetical protein SDJN02_05093 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0019521 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR36720	TAF RNA POLYMERASE I SUBUNIT A	coord: 8..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019521.1	Lag0019521.1	mRNA