Lag0019501 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019501
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein trichome birefringence-like 42
Locationchr5: 42816776 .. 42817374 (+)
RNA-Seq ExpressionLag0019501
SyntenyLag0019501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCTCCGCCGCCCGGTTCTGCGGCGGCGTTTTGTTTCTCATTTCTCTGCAAATCTTCCACCGCCGTGGGGCCGTCGTCGGAGACAGTTCTTCGACGGGGCGGCTGAAGCAGGGGAATAGTAATAATGATGGGTGTGGGTTTTACGAAGGCAGCTGGGTTTACGACGTGTCGTACCCGCTTTACGACGTGTCGAATTGCCCCTTCGTCGGAGACGGATTTAACTGCCGGCAGAATGGCCGCCAGGACTCCGACTACCTCAAGTTCCGGTGGCAGCCCAGTCGCTGCGACCTCCCCAGGTACCCCTTTCTTCAATCAAGTACAATTATTCGTTTTTTGAATTTTTTTTCATTGGATTTTGTTTTGTTTGTTAACAACATGAGTATTTGAACCACCGAACTTTTGATTATTTGTACGGATATTGAATTGATATTAATGTTTTTAACATTTTTAAAAATTTACAATAAATTCAAATGTTAATATATAGGTTAAAAATCACTTTTAGTCTCTAAACTTTCATAAAAGTAACAATTTGGTTCCTTAACTTTGATTTGTAACGATTTAGTTCCAGTACTTTCAATTTTGTAACAATTTAG

mRNA sequence

ATGGCCTTCTCCGCCGCCCGGTTCTGCGGCGGCGTTTTGTTTCTCATTTCTCTGCAAATCTTCCACCGCCGTGGGGCCGTCGTCGGAGACAGTTCTTCGACGGGGCGGCTGAAGCAGGGGAATAGTAATAATGATGGGTGTGGGTTTTACGAAGGCAGCTGGGTTTACGACGTGTCGTACCCGCTTTACGACGTGTCGAATTGCCCCTTCGTCGGAGACGGATTTAACTGCCGGCAGAATGGCCGCCAGGACTCCGACTACCTCAAGTTCCGGTGGCAGCCCAGTCGCTGCGACCTCCCCAGTTCCAGTACTTTCAATTTTGTAACAATTTAG

Coding sequence (CDS)

ATGGCCTTCTCCGCCGCCCGGTTCTGCGGCGGCGTTTTGTTTCTCATTTCTCTGCAAATCTTCCACCGCCGTGGGGCCGTCGTCGGAGACAGTTCTTCGACGGGGCGGCTGAAGCAGGGGAATAGTAATAATGATGGGTGTGGGTTTTACGAAGGCAGCTGGGTTTACGACGTGTCGTACCCGCTTTACGACGTGTCGAATTGCCCCTTCGTCGGAGACGGATTTAACTGCCGGCAGAATGGCCGCCAGGACTCCGACTACCTCAAGTTCCGGTGGCAGCCCAGTCGCTGCGACCTCCCCAGTTCCAGTACTTTCAATTTTGTAACAATTTAG

Protein sequence

MAFSAARFCGGVLFLISLQIFHRRGAVVGDSSSTGRLKQGNSNNDGCGFYEGSWVYDVSYPLYDVSNCPFVGDGFNCRQNGRQDSDYLKFRWQPSRCDLPSSSTFNFVTI
Homology
BLAST of Lag0019501 vs. NCBI nr
Match: XP_004137309.1 (protein trichome birefringence-like 42 [Cucumis sativus] >KGN53586.1 hypothetical protein Csa_015123 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 69/100 (69.00%), Postives = 79/100 (79.00%), Query Frame = 0

Query: 1   MAFSAARFCGGVLFLISLQIFHRRGAVVGDSSSTGRLKQGNSNNDGCGFYEGSWVYDVSY 60
           MA +  RF GGV+FLI LQI  RRG V GDS    +  +  +NN+GC FYEGSWVYDVSY
Sbjct: 1   MALAGGRFTGGVIFLIFLQIILRRGVVHGDSFYERQKPKQWNNNNGCDFYEGSWVYDVSY 60

Query: 61  PLYDVSNCPFVGDGFNCRQNGRQDSDYLKFRWQPSRCDLP 101
           PLYD SNCPF+GDGFNC++NGR DS+YLKFRWQP RCDLP
Sbjct: 61  PLYDASNCPFIGDGFNCQKNGRPDSEYLKFRWQPRRCDLP 100

BLAST of Lag0019501 vs. NCBI nr
Match: XP_008451728.1 (PREDICTED: protein trichome birefringence-like 42 [Cucumis melo] >TYK16262.1 protein trichome birefringence-like 42 [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-30
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 1   MAFSAARFCGGVLFLISLQIFHRRGAVVGDSSSTGRLKQGNSNNDGCGFYEGSWVYDVSY 60
           MA +A RF GGV+FLI LQI  RR    GDS S  +  +  +NN+ C FY+GSWVYD SY
Sbjct: 1   MALAARRFSGGVIFLIFLQIILRR----GDSFSGRQKPKQWNNNNACDFYQGSWVYDASY 60

Query: 61  PLYDVSNCPFVGDGFNCRQNGRQDSDYLKFRWQPSRCDLP 101
           PLYD SNCPF+GDGF CR+NGR D+DYLKFRWQP RCDLP
Sbjct: 61  PLYDASNCPFIGDGFKCRKNGRPDTDYLKFRWQPRRCDLP 96

BLAST of Lag0019501 vs. NCBI nr
Match: KAA0059051.1 (protein VTE6 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 4.8e-30
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 0

Query: 1   MAFSAARFCGGVLFLISLQIFHRRGAVVGDSSSTGRLKQGNSNNDGCGFYEGSWVYDVSY 60
           MA +A RF GGV+FLI LQI  RR    GDS S  +  +  +NN+ C FY+GSWVYD SY
Sbjct: 1   MALAARRFSGGVIFLIFLQIILRR----GDSFSGRQKPKQWNNNNACVFYQGSWVYDASY 60

Query: 61  PLYDVSNCPFVGDGFNCRQNGRQDSDYLKFRWQPSRCDLP 101
           PLYD SNCPF+GDGF CR+NGR D+DYLKFRWQP RCDLP
Sbjct: 61  PLYDASNCPFIGDGFKCRKNGRPDTDYLKFRWQPRRCDLP 96

BLAST of Lag0019501 vs. NCBI nr
Match: TXG66670.1 (hypothetical protein EZV62_007945 [Acer yangbiense])

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 29  GDSSSTGRLKQGNSNNDGCGFYEGSWVYDVSYPLYDVSNCPFVGDGFNCRQNGRQDSDYL 88
           G ++S   +++  SN   C F+EGSWVYD SYP+YD SNCPF+  GF+C++NGR D DYL
Sbjct: 31  GLANSEYHIQKQQSN--ACNFFEGSWVYDNSYPIYDSSNCPFLAGGFDCQKNGRPDKDYL 90

Query: 89  KFRWQPSRCDLPSSSTFNFV 109
           K++WQP+RCDLP  +  +F+
Sbjct: 91  KYKWQPTRCDLPRFNGQDFL 108

BLAST of Lag0019501 vs. NCBI nr
Match: XP_019104304.1 (PREDICTED: protein trichome birefringence-like 42 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-18
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 45  DGCGFYEGSWVYDVSYPLYDVSNCPFVGDGFNCRQNGRQDSDYLKFRWQPSRCDL 100
           DGC  ++GSWVYD SYPLYD  NCPF+G GF+C++NGR D DYLK+RWQP+ CDL
Sbjct: 3   DGCDIFQGSWVYDTSYPLYDARNCPFIGGGFDCQKNGRPDIDYLKYRWQPNHCDL 57

BLAST of Lag0019501 vs. ExPASy Swiss-Prot
Match: Q6DR10 (Protein trichome birefringence-like 43 OS=Arabidopsis thaliana OX=3702 GN=TBL43 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-19
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 30  DSSSTGRLKQGNSNNDGCGFYEGSWVYDVSYPLYDVSNCPFVGDGFNCRQNGRQDSDYLK 89
           +S+S      G      C  Y+GSWVYD SYPLYD  NCPF+   FNC+ NGR DS+YLK
Sbjct: 26  ESASANGSSLGLPPRKFCNIYQGSWVYDKSYPLYDSKNCPFIERQFNCKSNGRPDSEYLK 85

Query: 90  FRWQPSRCDLPSSSTFNFV 109
           +RWQPS C+LP  +  +F+
Sbjct: 86  YRWQPSGCNLPRFNGLDFL 104

BLAST of Lag0019501 vs. ExPASy Swiss-Prot
Match: Q9SIN2 (Protein trichome birefringence-like 39 OS=Arabidopsis thaliana OX=3702 GN=TBL39 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-16
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 31  SSSTGRLKQGNSNND---------GCGFYEGSWVYDVSYPLYDVSNCPFVGDGFNCRQNG 90
           S+ +  +   +SNND          C ++ G+WVYDV YPLYD   CPF+   FNC++ G
Sbjct: 22  STVSAYINSTSSNNDEVRRELASGRCNWFRGNWVYDVKYPLYDPYKCPFIDPQFNCKKYG 81

Query: 91  RQDSDYLKFRWQPSRCDLPSSSTFNFV 109
           R D+ YLK+RWQPS C LP  +   F+
Sbjct: 82  RPDNAYLKYRWQPSSCSLPRFNGLYFL 108

BLAST of Lag0019501 vs. ExPASy Swiss-Prot
Match: F4K5K4 (Protein trichome birefringence-like 5 OS=Arabidopsis thaliana OX=3702 GN=TBL5 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.1e-16
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 46  GCGFYEGSWVY-DVSYPLYDVSNCPFVGDGFNCRQNGRQDSDYLKFRWQPSRCDLPSSST 105
           GC  Y+GSWV  D  YPLY   +CP+V D F+C++NGR+DSDYL +RW+P  CDLP  + 
Sbjct: 140 GCDLYKGSWVKGDDEYPLYQPGSCPYVDDAFDCQRNGRRDSDYLNWRWKPDGCDLPRFNA 199

Query: 106 FNFV 109
            +F+
Sbjct: 200 TDFL 203

BLAST of Lag0019501 vs. ExPASy Swiss-Prot
Match: O22960 (Protein trichome birefringence-like 37 OS=Arabidopsis thaliana OX=3702 GN=TBL37 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 0

Query: 26  AVVGDSSSTGRLKQGNSNNDGCGFYEGSWVYDVSYPLYDVSNCPFVGDGFNCRQNGRQDS 85
           AV G       LK G     GC  ++G WV+D SYP YD S CPF+   F+C + GR D 
Sbjct: 45  AVAGRGGGKEMLK-GRKQTSGCNLFQGRWVFDASYPFYDSSTCPFIDGEFDCLKFGRPDK 104

Query: 86  DYLKFRWQPSRCDLP 101
            +LK+ WQP  C +P
Sbjct: 105 QFLKYSWQPDSCTVP 118

BLAST of Lag0019501 vs. ExPASy Swiss-Prot
Match: Q5BPJ0 (Protein trichome birefringence-like 11 OS=Arabidopsis thaliana OX=3702 GN=TBL11 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 43  NNDGCGFYEGSWVYDVSYPLYDVSNCPFVGDGFNCRQNGRQDSDYLKFRWQPSRCDLP 101
           + +GC  + G WV+D SYPLY   +C F+ +GF C + GR D  Y K+RWQP+ CDLP
Sbjct: 95  SGNGCDLFNGKWVWDESYPLYQSKDCTFIDEGFRCTEFGRPDLFYTKWRWQPNHCDLP 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004137309.11.2e-3369.00protein trichome birefringence-like 42 [Cucumis sativus] >KGN53586.1 hypothetica... [more]
XP_008451728.12.8e-3066.00PREDICTED: protein trichome birefringence-like 42 [Cucumis melo] >TYK16262.1 pro... [more]
KAA0059051.14.8e-3066.00protein VTE6 [Cucumis melo var. makuwa][more]
TXG66670.12.5e-1853.75hypothetical protein EZV62_007945 [Acer yangbiense][more]
XP_019104304.14.2e-1869.09PREDICTED: protein trichome birefringence-like 42 [Beta vulgaris subsp. vulgaris... [more]
Match NameE-valueIdentityDescription
Q6DR101.8e-1951.90Protein trichome birefringence-like 43 OS=Arabidopsis thaliana OX=3702 GN=TBL43 ... [more]
Q9SIN22.4e-1643.68Protein trichome birefringence-like 39 OS=Arabidopsis thaliana OX=3702 GN=TBL39 ... [more]
F4K5K49.1e-1653.13Protein trichome birefringence-like 5 OS=Arabidopsis thaliana OX=3702 GN=TBL5 PE... [more]
O229602.2e-1444.00Protein trichome birefringence-like 37 OS=Arabidopsis thaliana OX=3702 GN=TBL37 ... [more]
Q5BPJ06.5e-1450.00Protein trichome birefringence-like 11 OS=Arabidopsis thaliana OX=3702 GN=TBL11 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025846PMR5 N-terminal domainPFAMPF14416PMR5Ncoord: 46..98
e-value: 1.7E-21
score: 76.3
NoneNo IPR availablePANTHERPTHR32285:SF30PROTEIN TRICHOME BIREFRINGENCE-LIKE 42coord: 42..105
IPR029962Trichome birefringence-like familyPANTHERPTHR32285PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATEDcoord: 42..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019501.1Lag0019501.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016413 O-acetyltransferase activity