Lag0019489 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019489
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 42732389 .. 42732960 (+)
RNA-Seq ExpressionLag0019489
SyntenyLag0019489
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATCTCCGCCGATGCTTCTTCCTCCTCTTCGTCTTCCTTCCTCGAATGCGCCACTCCTACGAGTCCGAGCGTTCAACTCGTGTCCAAATCGGTGTCGGATCGGCTTCTCGGCAAATTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGCAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCTACGGCCGATGTCTGCTCCAGTTACGAGGTTCTCTCGAAGCTTGAGTCTGCGAAGAAGGCATGGAGGAAATTTGTTATCTGTTTCAGAGTAAGTGCTCTCACGATTGCATTATGATTTACTCTGTGATTGCTGTGTTTTGTTTACTTGATTTCGAATCGGTTTGCTGCATTGTGAAAGAACCTGTGGTAGATCTAGGATTGTTTGAGAAAACGTGAAGAATTGCATTCTATGCTTAAAACAAACGTATTTGCAGATTTTTTTTTCATTATCTGTTTCAGAGCAAGTGCTTACAATCGCAGTGTGATTTACGCAGCGATTGCTCTGTTTCGTTTGCTTTATTTCGAAATCAATTCGCTGTAGTGTGA

mRNA sequence

ATGCCAATCTCCGCCGATGCTTCTTCCTCCTCTTCGTCTTCCTTCCTCGAATGCGCCACTCCTACGAGTCCGAGCGTTCAACTCGTGTCCAAATCGGTGTCGGATCGGCTTCTCGGCAAATTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGCAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCTACGGCCGATGTCTGCTCCAGTTACGAGGTTCTCTCGAAGCTTGAGTCTGCGAAGAAGGCATGGAGGAAATTTGTTATCTGTTTCAGAAGCAAGTGCTTACAATCGCAGTGTGATTTACGCAGCGATTGCTCTGTTTCGTTTGCTTTATTTCGAAATCAATTCGCTGTAGTGTGA

Coding sequence (CDS)

ATGCCAATCTCCGCCGATGCTTCTTCCTCCTCTTCGTCTTCCTTCCTCGAATGCGCCACTCCTACGAGTCCGAGCGTTCAACTCGTGTCCAAATCGGTGTCGGATCGGCTTCTCGGCAAATTCTTCGACGCCTCGCAATTCGACTTCGATTACGAACAGAGCAGCTTGTGGTCTCCGCCGATTCCGCGGCGAGTGTTTCTGGATTCTACGGCCGATGTCTGCTCCAGTTACGAGGTTCTCTCGAAGCTTGAGTCTGCGAAGAAGGCATGGAGGAAATTTGTTATCTGTTTCAGAAGCAAGTGCTTACAATCGCAGTGTGATTTACGCAGCGATTGCTCTGTTTCGTTTGCTTTATTTCGAAATCAATTCGCTGTAGTGTGA

Protein sequence

MPISADASSSSSSSFLECATPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPPIPRRVFLDSTADVCSSYEVLSKLESAKKAWRKFVICFRSKCLQSQCDLRSDCSVSFALFRNQFAVV
Homology
BLAST of Lag0019489 vs. NCBI nr
Match: XP_022142869.1 (uncharacterized protein LOC111012878 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-39
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query: 1   MPISA--DASSSSSSSFLECATPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS 60
           MPISA   +SSSSSSSFLEC +PTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS
Sbjct: 1   MPISAASSSSSSSSSSFLECTSPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWS 60

Query: 61  PPIPRRVFLDSTADVCSSYEVLSKLESAKKAWRKFVICFR 99
           PPIPRRVFLDS A+VCS YEV SKL+SAKKAWRKFVICFR
Sbjct: 61  PPIPRRVFLDSPAEVCSGYEVFSKLDSAKKAWRKFVICFR 100

BLAST of Lag0019489 vs. NCBI nr
Match: XP_022983484.1 (uncharacterized protein LOC111482071 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 1  MPISADASSSSSSSFLECATPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPIS ++S+ SSS F+ECATPT PSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1  MPISTESSTPSSSCFIECATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61 IPRRVFLDSTADVCSSYEVLSKLESAKKAWRKFVICFR 99
          IPRRVFLDS  DVCS YEVLSKLE AK AWRKFVICFR
Sbjct: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR 98

BLAST of Lag0019489 vs. NCBI nr
Match: XP_023516499.1 (uncharacterized protein LOC111780353 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 3.2e-38
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 0

Query: 1  MPISADASSSSSSSFLECATPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPIS ++S+ SSS F+EC TPT PSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1  MPISTESSTPSSSCFIECGTPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61 IPRRVFLDSTADVCSSYEVLSKLESAKKAWRKFVICFR 99
          IPRRVFLDS  DVCS YEVLSKLE AK AWRKFVICFR
Sbjct: 61 IPRRVFLDSPVDVCSGYEVLSKLEKAKTAWRKFVICFR 98

BLAST of Lag0019489 vs. NCBI nr
Match: XP_022942868.1 (uncharacterized protein LOC111447770 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-38
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 1  MPISADASSSSSSSFLECATPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
          MPIS ++S+ SSS F++CATPT PSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1  MPISTESSTPSSSCFIKCATPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61 IPRRVFLDSTADVCSSYEVLSKLESAKKAWRKFVICFR 99
          IPRRVFLDS  DVCS YEVLSKLE AK AWRKFVICFR
Sbjct: 61 IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFR 98

BLAST of Lag0019489 vs. NCBI nr
Match: KAG7031141.1 (hypothetical protein SDJN02_05180, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-38
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 1   MPISADASSSSSSSFLECATPTSPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60
           MPIS ++S+ SSS F+ECA PT PSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP
Sbjct: 1   MPISTESSTPSSSCFIECANPTIPSVQLVSKSVSDRLLGKFFDASQFDFDYEQSSLWSPP 60

Query: 61  IPRRVFLDSTADVCSSYEVLSKLESAKKAWRKFVICFRSKCL 103
           IPRRVFLDS  DVCS YEVLSKLE AK AWRKFVICFR   L
Sbjct: 61  IPRRVFLDSPLDVCSGYEVLSKLEKAKTAWRKFVICFRVSAL 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142869.12.9e-3989.00uncharacterized protein LOC111012878 [Momordica charantia][more]
XP_022983484.11.4e-3886.73uncharacterized protein LOC111482071 [Cucurbita maxima][more]
XP_023516499.13.2e-3885.71uncharacterized protein LOC111780353 [Cucurbita pepo subsp. pepo][more]
XP_022942868.14.2e-3885.71uncharacterized protein LOC111447770 [Cucurbita moschata][more]
KAG7031141.14.2e-3883.33hypothetical protein SDJN02_05180, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34287:SF12SUBFAMILY NOT NAMEDcoord: 1..99
NoneNo IPR availablePANTHERPTHR34287OS06G0551500 PROTEIN-RELATEDcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019489.1Lag0019489.1mRNA