Lag0019464 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019464
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglycine-rich RNA-binding protein GRP2A-like
Locationchr5: 42540779 .. 42541417 (+)
RNA-Seq ExpressionLag0019464
SyntenyLag0019464
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTTGACATGAAACCTTCAGTCATCATTTTCATAATCTGTGCTTCTTTAATAGCTGTTGTTGTGATTTTATGTTGTTTTTGTATAATTGGAGGTCGTAAAAAGAAAGAATCGACACGGCCTAGCGTAAGCGGATCGTCTATTAGTTCAAGGCCGCAACCATGGCGGCCCCAAACGTACTATGATGTTGAGTTCGGACCAGGCATTCGAACATACAACAGACAAGACACTCAAAGAAGCGAACAAAGCATTCGAACGACAGACAGACAAGCCGGCACTCAAAGAAGCGAACCGAGCATTTGGACAGAAAGATCACTAAGCAGTCAACGAAGCGAACCAAGCGTTCGAACAGACAGACAAGCTGGCGCTCAAAGAATTAGCGGAATCAAGGATGGTGGGATGGCCATCTTGGCTGGAGCAGGTGCTGCTATAGCTACTGCAGCTGCGGTCCTTGGTTTCAGTAGTGAAGGAGAAGATGGTGGCTATATTGGTGATGGTTATTGTGGAGATGGCAGCCGGGGCGATGACTATGCCGATAGTTATGGCGGTGGTGGTGCCTGTGGCGCTGGCTGTGGAAGTGGCGGTGGTGGCGGCGGCGGCTGTGGTGGTGCCTGTGGCAGTGGCTCTCGACTCTGA

mRNA sequence

ATGTTGTTTGACATGAAACCTTCAGTCATCATTTTCATAATCTGTGCTTCTTTAATAGCTGTTGTTGTGATTTTATGTTGTTTTTGTATAATTGGAGGTCGTAAAAAGAAAGAATCGACACGGCCTAGCGTAAGCGGATCGTCTATTAGTTCAAGGCCGCAACCATGGCGGCCCCAAACGTACTATGATGTTGAGTTCGGACCAGGCATTCGAACATACAACAGACAAGACACTCAAAGAAGCGAACAAAGCATTCGAACGACAGACAGACAAGCCGGCACTCAAAGAAGCGAACCGAGCATTTGGACAGAAAGATCACTAAGCAGTCAACGAAGCGAACCAAGCGTTCGAACAGACAGACAAGCTGGCGCTCAAAGAATTAGCGGAATCAAGGATGGTGGGATGGCCATCTTGGCTGGAGCAGGTGCTGCTATAGCTACTGCAGCTGCGGTCCTTGGTTTCAGTAGTGAAGGAGAAGATGGTGGCTATATTGGTGATGGTTATTGTGGAGATGGCAGCCGGGGCGATGACTATGCCGATAGTTATGGCGGTGGTGGTGCCTGTGGCGCTGGCTGTGGAAGTGGCGGTGGTGGCGGCGGCGGCTGTGGTGGTGCCTGTGGCAGTGGCTCTCGACTCTGA

Coding sequence (CDS)

ATGTTGTTTGACATGAAACCTTCAGTCATCATTTTCATAATCTGTGCTTCTTTAATAGCTGTTGTTGTGATTTTATGTTGTTTTTGTATAATTGGAGGTCGTAAAAAGAAAGAATCGACACGGCCTAGCGTAAGCGGATCGTCTATTAGTTCAAGGCCGCAACCATGGCGGCCCCAAACGTACTATGATGTTGAGTTCGGACCAGGCATTCGAACATACAACAGACAAGACACTCAAAGAAGCGAACAAAGCATTCGAACGACAGACAGACAAGCCGGCACTCAAAGAAGCGAACCGAGCATTTGGACAGAAAGATCACTAAGCAGTCAACGAAGCGAACCAAGCGTTCGAACAGACAGACAAGCTGGCGCTCAAAGAATTAGCGGAATCAAGGATGGTGGGATGGCCATCTTGGCTGGAGCAGGTGCTGCTATAGCTACTGCAGCTGCGGTCCTTGGTTTCAGTAGTGAAGGAGAAGATGGTGGCTATATTGGTGATGGTTATTGTGGAGATGGCAGCCGGGGCGATGACTATGCCGATAGTTATGGCGGTGGTGGTGCCTGTGGCGCTGGCTGTGGAAGTGGCGGTGGTGGCGGCGGCGGCTGTGGTGGTGCCTGTGGCAGTGGCTCTCGACTCTGA

Protein sequence

MLFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSRPQPWRPQTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWTERSLSSQRSEPSVRTDRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSSEGEDGGYIGDGYCGDGSRGDDYADSYGGGGACGAGCGSGGGGGGGCGGACGSGSRL
Homology
BLAST of Lag0019464 vs. NCBI nr
Match: XP_023543717.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-41
Identity = 134/220 (60.91%), Postives = 152/220 (69.09%), Query Frame = 0

Query: 2   LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR--PQPWRPQ 61
           +FD+KPS+II IICASL+A VVILCC CII GR++K+STRP+ SGS  S R  P PW  Q
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRRRKDSTRPTPSGSISSRRPPPPPWPRQ 60

Query: 62  TYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVRT 121
           +YYDVE G GIR Y RQDT RSEQS+  +DR  G QRSE  S  T+RS SSQ SEPSV  
Sbjct: 61  SYYDVESGQGIRAY-RQDTLRSEQSV-PSDRH-GAQRSERYSFRTDRSRSSQSSEPSVGR 120

Query: 122 DRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGDD 181
           D+Q      SG KDGGMAILAGAGAA+A AAA +G SS  G++ G  GDGY GDGSR D 
Sbjct: 121 DKQ------SGFKDGGMAILAGAGAAMAAAAAAIGLSSGGGQEYGGNGDGYWGDGSRTDG 180

Query: 182 YADSY---------GGGGACGAGCGSGGGGGGGCGGACGS 209
           Y DS+         GGGG CGAGCGS G      G ACGS
Sbjct: 181 YGDSWGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 205

BLAST of Lag0019464 vs. NCBI nr
Match: XP_022942031.1 (glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata])

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-39
Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0

Query: 2   LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR---PQPWRP 61
           +FD+KPS+II IICASL+A VVILCC CII GRK+K+STRP+ SGS  S R   P PW  
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPPWPR 60

Query: 62  QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVR 121
           Q+YYDVE G GIR Y RQDT RSEQS+  +DR  G QRSE  S  T+RS S+Q SEPSV 
Sbjct: 61  QSYYDVESGQGIRAY-RQDTLRSEQSV-PSDRH-GAQRSEQYSFRTDRSRSNQSSEPSVG 120

Query: 122 TDRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGD 181
            D++      SG KDGGMAI AGAGAA+A AAA LG SS  G++ G  GDGY GD SR D
Sbjct: 121 RDKR------SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTD 180

Query: 182 DYADS---------YGGGGACGAGCGSGGGGGGGCGGACGS 209
            Y DS          GGGG CGAGCGS G      G ACGS
Sbjct: 181 GYGDSCGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 206

BLAST of Lag0019464 vs. NCBI nr
Match: KAG6600486.1 (hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-38
Identity = 131/220 (59.55%), Postives = 148/220 (67.27%), Query Frame = 0

Query: 2   LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR--PQPWRPQ 61
           +FD+KPS+II IICASL+A VVILCC CII GRK+K+STRP+ SGS  S R  P PW  Q
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPWPRQ 60

Query: 62  TYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVRT 121
           +YYDVE G GIR + RQDT RSEQS+  +DR  G QRSE  S  T+RS SSQ SEPSV  
Sbjct: 61  SYYDVESGQGIRAF-RQDTLRSEQSV-PSDRH-GAQRSEQYSFRTDRSRSSQSSEPSVGR 120

Query: 122 DRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGDD 181
           D++      SG KDGGMAI AGAGAA+A AAA LG SS  G++ G  GDGY GD S  D 
Sbjct: 121 DKR------SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSLTDG 180

Query: 182 YADS---------YGGGGACGAGCGSGGGGGGGCGGACGS 209
           Y DS          GGGG CGAGCGS G      G ACGS
Sbjct: 181 YGDSCGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 205

BLAST of Lag0019464 vs. NCBI nr
Match: KAE8649249.1 (hypothetical protein Csa_015081, partial [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 109/228 (47.81%), Postives = 134/228 (58.77%), Query Frame = 0

Query: 1   MLFDMKPSVIIFIICASLIAVVVILCCFCIIG-GRKKKESTR-PSVSGSSISSRPQPWRP 60
           ML D+KPS++I IIC SL+ V  ILCCFCIIG G +KK++ + P+ S S   SRP     
Sbjct: 14  MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPL---- 73

Query: 61  QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWT--------ERSL--- 120
           QTY D+EFG GIRTY +  T RSE+SI +  R  G+QR E SI+T        E+S+   
Sbjct: 74  QTYRDIEFGQGIRTYRQDSTPRSERSISSDTR--GSQRGEQSIFTDARGFQTSEQSIFPD 133

Query: 121 --SSQRSEPSVRTDRQAGAQ---------RISGIKDGGMAILAGAGAAIATAAAVLGFSS 180
             SS+R+E S+  D Q+  +         R S IKDGGMAILAGAGAAIATAA VLG SS
Sbjct: 134 TRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSS 193

Query: 181 ----EGEDGGYIGDGYCGDGSRGDDYADSYGGGGACGAGCGSGGGGGG 201
               E  DG Y+ +  C DG+          GGG  G G GS   G G
Sbjct: 194 YQGGEDIDGDYVDN--CDDGT---------DGGGVYGGGVGSNSYGNG 224

BLAST of Lag0019464 vs. NCBI nr
Match: XP_022142785.1 (ctenidin-3-like [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-19
Identity = 103/224 (45.98%), Postives = 112/224 (50.00%), Query Frame = 0

Query: 5   MKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSRPQPWRPQTY--Y 64
           MKP   I IIC+S+IA VVILCC CII GRKKKE+ R + + SS      PW  QTY  +
Sbjct: 1   MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60

Query: 65  DVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWTERSLSSQRSEPSVRTDRQA 124
           D+E G G RT NRQ                                              
Sbjct: 61  DIEPGQGART-NRQ---------------------------------------------- 120

Query: 125 GAQRISGIKDGGMAILAGAGAAIATAAAVLGFSSEGEDG-------------GYIGDGYC 184
              R SGIKDGGMAILAGAG AIATAA + G SSEG +G             GY  DG C
Sbjct: 121 -GARGSGIKDGGMAILAGAGTAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSC 174

Query: 185 GDGSRGDDYAD-SYGGGGACGAGCGSGGGGGGGCGGACGSGSRL 213
           GDG  G D  D   GGGG CG G G GGG GGGCGG CG GS L
Sbjct: 181 GDGDGGGDCGDGGKGGGGGCGDG-GGGGGCGGGCGG-CGGGSEL 174

BLAST of Lag0019464 vs. ExPASy TrEMBL
Match: A0A6J1FMR9 (glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC111447219 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0

Query: 2   LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR---PQPWRP 61
           +FD+KPS+II IICASL+A VVILCC CII GRK+K+STRP+ SGS  S R   P PW  
Sbjct: 1   MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPPWPR 60

Query: 62  QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVR 121
           Q+YYDVE G GIR Y RQDT RSEQS+  +DR  G QRSE  S  T+RS S+Q SEPSV 
Sbjct: 61  QSYYDVESGQGIRAY-RQDTLRSEQSV-PSDRH-GAQRSEQYSFRTDRSRSNQSSEPSVG 120

Query: 122 TDRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGD 181
            D++      SG KDGGMAI AGAGAA+A AAA LG SS  G++ G  GDGY GD SR D
Sbjct: 121 RDKR------SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTD 180

Query: 182 DYADS---------YGGGGACGAGCGSGGGGGGGCGGACGS 209
            Y DS          GGGG CGAGCGS G      G ACGS
Sbjct: 181 GYGDSCGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 206

BLAST of Lag0019464 vs. ExPASy TrEMBL
Match: A0A0A0L0B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 109/228 (47.81%), Postives = 134/228 (58.77%), Query Frame = 0

Query: 1   MLFDMKPSVIIFIICASLIAVVVILCCFCIIG-GRKKKESTR-PSVSGSSISSRPQPWRP 60
           ML D+KPS++I IIC SL+ V  ILCCFCIIG G +KK++ + P+ S S   SRP     
Sbjct: 1   MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPL---- 60

Query: 61  QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWT--------ERSL--- 120
           QTY D+EFG GIRTY +  T RSE+SI +  R  G+QR E SI+T        E+S+   
Sbjct: 61  QTYRDIEFGQGIRTYRQDSTPRSERSISSDTR--GSQRGEQSIFTDARGFQTSEQSIFPD 120

Query: 121 --SSQRSEPSVRTDRQAGAQ---------RISGIKDGGMAILAGAGAAIATAAAVLGFSS 180
             SS+R+E S+  D Q+  +         R S IKDGGMAILAGAGAAIATAA VLG SS
Sbjct: 121 TRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSS 180

Query: 181 ----EGEDGGYIGDGYCGDGSRGDDYADSYGGGGACGAGCGSGGGGGG 201
               E  DG Y+ +  C DG+          GGG  G G GS   G G
Sbjct: 181 YQGGEDIDGDYVDN--CDDGT---------DGGGVYGGGVGSNSYGNG 211

BLAST of Lag0019464 vs. ExPASy TrEMBL
Match: A0A6J1CLX2 (ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 103/224 (45.98%), Postives = 112/224 (50.00%), Query Frame = 0

Query: 5   MKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSRPQPWRPQTY--Y 64
           MKP   I IIC+S+IA VVILCC CII GRKKKE+ R + + SS      PW  QTY  +
Sbjct: 1   MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60

Query: 65  DVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWTERSLSSQRSEPSVRTDRQA 124
           D+E G G RT NRQ                                              
Sbjct: 61  DIEPGQGART-NRQ---------------------------------------------- 120

Query: 125 GAQRISGIKDGGMAILAGAGAAIATAAAVLGFSSEGEDG-------------GYIGDGYC 184
              R SGIKDGGMAILAGAG AIATAA + G SSEG +G             GY  DG C
Sbjct: 121 -GARGSGIKDGGMAILAGAGTAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSC 174

Query: 185 GDGSRGDDYAD-SYGGGGACGAGCGSGGGGGGGCGGACGSGSRL 213
           GDG  G D  D   GGGG CG G G GGG GGGCGG CG GS L
Sbjct: 181 GDGDGGGDCGDGGKGGGGGCGDG-GGGGGCGGGCGG-CGGGSEL 174

BLAST of Lag0019464 vs. ExPASy TrEMBL
Match: A0A5A7VBP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00990 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.5e-13
Identity = 97/211 (45.97%), Postives = 114/211 (54.03%), Query Frame = 0

Query: 32  GGRKKKES-TRPSVSGSSISSRPQPWRPQTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDR 91
           GG KKK++   P+ S S   SRP     QTY DVEFG GIRTY +  T RSEQSI    R
Sbjct: 4   GGYKKKDAHGLPTPSVSIGRSRPL----QTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTR 63

Query: 92  QAGTQRSEPSIW--------TERSL-----SSQRSE------------PSVRTDRQAGAQ 151
             G+QR E SI+        +E+S+     SS+R+E             S R DRQ    
Sbjct: 64  --GSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNT- 123

Query: 152 RISGIKDGGMAILAGAGAAIATAAAVLGFSS----EGEDGGYIGDGYCGDGSRGDDYADS 211
           R S IKDGGMAILAGAGAAIATAA VLG SS    E  DGGY+ +  CGDG+        
Sbjct: 124 RESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDN--CGDGTD------- 183

Query: 212 YGGGGACGAGCGSGGGGGGGCGGACGSGSRL 213
                      GSG  GGGG   +CG+GS+L
Sbjct: 184 -----------GSGVYGGGGGSNSCGNGSQL 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023543717.14.0e-4160.91glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo][more]
XP_022942031.12.9e-3959.73glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata][more]
KAG6600486.11.9e-3859.55hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649249.11.2e-2147.81hypothetical protein Csa_015081, partial [Cucumis sativus][more]
XP_022142785.12.5e-1945.98ctenidin-3-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FMR91.4e-3959.73glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A0A0L0B25.9e-2247.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1[more]
A0A6J1CLX21.2e-1945.98ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1[more]
A0A5A7VBP68.5e-1345.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019464.1Lag0019464.1mRNA