Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTTGACATGAAACCTTCAGTCATCATTTTCATAATCTGTGCTTCTTTAATAGCTGTTGTTGTGATTTTATGTTGTTTTTGTATAATTGGAGGTCGTAAAAAGAAAGAATCGACACGGCCTAGCGTAAGCGGATCGTCTATTAGTTCAAGGCCGCAACCATGGCGGCCCCAAACGTACTATGATGTTGAGTTCGGACCAGGCATTCGAACATACAACAGACAAGACACTCAAAGAAGCGAACAAAGCATTCGAACGACAGACAGACAAGCCGGCACTCAAAGAAGCGAACCGAGCATTTGGACAGAAAGATCACTAAGCAGTCAACGAAGCGAACCAAGCGTTCGAACAGACAGACAAGCTGGCGCTCAAAGAATTAGCGGAATCAAGGATGGTGGGATGGCCATCTTGGCTGGAGCAGGTGCTGCTATAGCTACTGCAGCTGCGGTCCTTGGTTTCAGTAGTGAAGGAGAAGATGGTGGCTATATTGGTGATGGTTATTGTGGAGATGGCAGCCGGGGCGATGACTATGCCGATAGTTATGGCGGTGGTGGTGCCTGTGGCGCTGGCTGTGGAAGTGGCGGTGGTGGCGGCGGCGGCTGTGGTGGTGCCTGTGGCAGTGGCTCTCGACTCTGA
mRNA sequence
ATGTTGTTTGACATGAAACCTTCAGTCATCATTTTCATAATCTGTGCTTCTTTAATAGCTGTTGTTGTGATTTTATGTTGTTTTTGTATAATTGGAGGTCGTAAAAAGAAAGAATCGACACGGCCTAGCGTAAGCGGATCGTCTATTAGTTCAAGGCCGCAACCATGGCGGCCCCAAACGTACTATGATGTTGAGTTCGGACCAGGCATTCGAACATACAACAGACAAGACACTCAAAGAAGCGAACAAAGCATTCGAACGACAGACAGACAAGCCGGCACTCAAAGAAGCGAACCGAGCATTTGGACAGAAAGATCACTAAGCAGTCAACGAAGCGAACCAAGCGTTCGAACAGACAGACAAGCTGGCGCTCAAAGAATTAGCGGAATCAAGGATGGTGGGATGGCCATCTTGGCTGGAGCAGGTGCTGCTATAGCTACTGCAGCTGCGGTCCTTGGTTTCAGTAGTGAAGGAGAAGATGGTGGCTATATTGGTGATGGTTATTGTGGAGATGGCAGCCGGGGCGATGACTATGCCGATAGTTATGGCGGTGGTGGTGCCTGTGGCGCTGGCTGTGGAAGTGGCGGTGGTGGCGGCGGCGGCTGTGGTGGTGCCTGTGGCAGTGGCTCTCGACTCTGA
Coding sequence (CDS)
ATGTTGTTTGACATGAAACCTTCAGTCATCATTTTCATAATCTGTGCTTCTTTAATAGCTGTTGTTGTGATTTTATGTTGTTTTTGTATAATTGGAGGTCGTAAAAAGAAAGAATCGACACGGCCTAGCGTAAGCGGATCGTCTATTAGTTCAAGGCCGCAACCATGGCGGCCCCAAACGTACTATGATGTTGAGTTCGGACCAGGCATTCGAACATACAACAGACAAGACACTCAAAGAAGCGAACAAAGCATTCGAACGACAGACAGACAAGCCGGCACTCAAAGAAGCGAACCGAGCATTTGGACAGAAAGATCACTAAGCAGTCAACGAAGCGAACCAAGCGTTCGAACAGACAGACAAGCTGGCGCTCAAAGAATTAGCGGAATCAAGGATGGTGGGATGGCCATCTTGGCTGGAGCAGGTGCTGCTATAGCTACTGCAGCTGCGGTCCTTGGTTTCAGTAGTGAAGGAGAAGATGGTGGCTATATTGGTGATGGTTATTGTGGAGATGGCAGCCGGGGCGATGACTATGCCGATAGTTATGGCGGTGGTGGTGCCTGTGGCGCTGGCTGTGGAAGTGGCGGTGGTGGCGGCGGCGGCTGTGGTGGTGCCTGTGGCAGTGGCTCTCGACTCTGA
Protein sequence
MLFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSRPQPWRPQTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWTERSLSSQRSEPSVRTDRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSSEGEDGGYIGDGYCGDGSRGDDYADSYGGGGACGAGCGSGGGGGGGCGGACGSGSRL
Homology
BLAST of Lag0019464 vs. NCBI nr
Match:
XP_023543717.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 179.1 bits (453), Expect = 4.0e-41
Identity = 134/220 (60.91%), Postives = 152/220 (69.09%), Query Frame = 0
Query: 2 LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR--PQPWRPQ 61
+FD+KPS+II IICASL+A VVILCC CII GR++K+STRP+ SGS S R P PW Q
Sbjct: 1 MFDIKPSIIILIICASLLAAVVILCCLCIIRGRRRKDSTRPTPSGSISSRRPPPPPWPRQ 60
Query: 62 TYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVRT 121
+YYDVE G GIR Y RQDT RSEQS+ +DR G QRSE S T+RS SSQ SEPSV
Sbjct: 61 SYYDVESGQGIRAY-RQDTLRSEQSV-PSDRH-GAQRSERYSFRTDRSRSSQSSEPSVGR 120
Query: 122 DRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGDD 181
D+Q SG KDGGMAILAGAGAA+A AAA +G SS G++ G GDGY GDGSR D
Sbjct: 121 DKQ------SGFKDGGMAILAGAGAAMAAAAAAIGLSSGGGQEYGGNGDGYWGDGSRTDG 180
Query: 182 YADSY---------GGGGACGAGCGSGGGGGGGCGGACGS 209
Y DS+ GGGG CGAGCGS G G ACGS
Sbjct: 181 YGDSWGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 205
BLAST of Lag0019464 vs. NCBI nr
Match:
XP_022942031.1 (glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata])
HSP 1 Score: 172.9 bits (437), Expect = 2.9e-39
Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0
Query: 2 LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR---PQPWRP 61
+FD+KPS+II IICASL+A VVILCC CII GRK+K+STRP+ SGS S R P PW
Sbjct: 1 MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPPWPR 60
Query: 62 QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVR 121
Q+YYDVE G GIR Y RQDT RSEQS+ +DR G QRSE S T+RS S+Q SEPSV
Sbjct: 61 QSYYDVESGQGIRAY-RQDTLRSEQSV-PSDRH-GAQRSEQYSFRTDRSRSNQSSEPSVG 120
Query: 122 TDRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGD 181
D++ SG KDGGMAI AGAGAA+A AAA LG SS G++ G GDGY GD SR D
Sbjct: 121 RDKR------SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTD 180
Query: 182 DYADS---------YGGGGACGAGCGSGGGGGGGCGGACGS 209
Y DS GGGG CGAGCGS G G ACGS
Sbjct: 181 GYGDSCGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 206
BLAST of Lag0019464 vs. NCBI nr
Match:
KAG6600486.1 (hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 170.2 bits (430), Expect = 1.9e-38
Identity = 131/220 (59.55%), Postives = 148/220 (67.27%), Query Frame = 0
Query: 2 LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR--PQPWRPQ 61
+FD+KPS+II IICASL+A VVILCC CII GRK+K+STRP+ SGS S R P PW Q
Sbjct: 1 MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPWPRQ 60
Query: 62 TYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVRT 121
+YYDVE G GIR + RQDT RSEQS+ +DR G QRSE S T+RS SSQ SEPSV
Sbjct: 61 SYYDVESGQGIRAF-RQDTLRSEQSV-PSDRH-GAQRSEQYSFRTDRSRSSQSSEPSVGR 120
Query: 122 DRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGDD 181
D++ SG KDGGMAI AGAGAA+A AAA LG SS G++ G GDGY GD S D
Sbjct: 121 DKR------SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSLTDG 180
Query: 182 YADS---------YGGGGACGAGCGSGGGGGGGCGGACGS 209
Y DS GGGG CGAGCGS G G ACGS
Sbjct: 181 YGDSCGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 205
BLAST of Lag0019464 vs. NCBI nr
Match:
KAE8649249.1 (hypothetical protein Csa_015081, partial [Cucumis sativus])
HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 109/228 (47.81%), Postives = 134/228 (58.77%), Query Frame = 0
Query: 1 MLFDMKPSVIIFIICASLIAVVVILCCFCIIG-GRKKKESTR-PSVSGSSISSRPQPWRP 60
ML D+KPS++I IIC SL+ V ILCCFCIIG G +KK++ + P+ S S SRP
Sbjct: 14 MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPL---- 73
Query: 61 QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWT--------ERSL--- 120
QTY D+EFG GIRTY + T RSE+SI + R G+QR E SI+T E+S+
Sbjct: 74 QTYRDIEFGQGIRTYRQDSTPRSERSISSDTR--GSQRGEQSIFTDARGFQTSEQSIFPD 133
Query: 121 --SSQRSEPSVRTDRQAGAQ---------RISGIKDGGMAILAGAGAAIATAAAVLGFSS 180
SS+R+E S+ D Q+ + R S IKDGGMAILAGAGAAIATAA VLG SS
Sbjct: 134 TRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSS 193
Query: 181 ----EGEDGGYIGDGYCGDGSRGDDYADSYGGGGACGAGCGSGGGGGG 201
E DG Y+ + C DG+ GGG G G GS G G
Sbjct: 194 YQGGEDIDGDYVDN--CDDGT---------DGGGVYGGGVGSNSYGNG 224
BLAST of Lag0019464 vs. NCBI nr
Match:
XP_022142785.1 (ctenidin-3-like [Momordica charantia])
HSP 1 Score: 106.7 bits (265), Expect = 2.5e-19
Identity = 103/224 (45.98%), Postives = 112/224 (50.00%), Query Frame = 0
Query: 5 MKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSRPQPWRPQTY--Y 64
MKP I IIC+S+IA VVILCC CII GRKKKE+ R + + SS PW QTY +
Sbjct: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60
Query: 65 DVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWTERSLSSQRSEPSVRTDRQA 124
D+E G G RT NRQ
Sbjct: 61 DIEPGQGART-NRQ---------------------------------------------- 120
Query: 125 GAQRISGIKDGGMAILAGAGAAIATAAAVLGFSSEGEDG-------------GYIGDGYC 184
R SGIKDGGMAILAGAG AIATAA + G SSEG +G GY DG C
Sbjct: 121 -GARGSGIKDGGMAILAGAGTAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSC 174
Query: 185 GDGSRGDDYAD-SYGGGGACGAGCGSGGGGGGGCGGACGSGSRL 213
GDG G D D GGGG CG G G GGG GGGCGG CG GS L
Sbjct: 181 GDGDGGGDCGDGGKGGGGGCGDG-GGGGGCGGGCGG-CGGGSEL 174
BLAST of Lag0019464 vs. ExPASy TrEMBL
Match:
A0A6J1FMR9 (glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC111447219 PE=4 SV=1)
HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0
Query: 2 LFDMKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSR---PQPWRP 61
+FD+KPS+II IICASL+A VVILCC CII GRK+K+STRP+ SGS S R P PW
Sbjct: 1 MFDIKPSIIILIICASLLAAVVILCCLCIIRGRKRKDSTRPTPSGSISSRRPPPPPPWPR 60
Query: 62 QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEP-SIWTERSLSSQRSEPSVR 121
Q+YYDVE G GIR Y RQDT RSEQS+ +DR G QRSE S T+RS S+Q SEPSV
Sbjct: 61 QSYYDVESGQGIRAY-RQDTLRSEQSV-PSDRH-GAQRSEQYSFRTDRSRSNQSSEPSVG 120
Query: 122 TDRQAGAQRISGIKDGGMAILAGAGAAIATAAAVLGFSS-EGEDGGYIGDGYCGDGSRGD 181
D++ SG KDGGMAI AGAGAA+A AAA LG SS G++ G GDGY GD SR D
Sbjct: 121 RDKR------SGFKDGGMAIFAGAGAAMAAAAAALGLSSGGGQEYGGNGDGYWGDSSRTD 180
Query: 182 DYADS---------YGGGGACGAGCGSGGGGGGGCGGACGS 209
Y DS GGGG CGAGCGS G G ACGS
Sbjct: 181 GYGDSCGNGNRDGGSGGGGVCGAGCGSVG------GSACGS 206
BLAST of Lag0019464 vs. ExPASy TrEMBL
Match:
A0A0A0L0B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 109/228 (47.81%), Postives = 134/228 (58.77%), Query Frame = 0
Query: 1 MLFDMKPSVIIFIICASLIAVVVILCCFCIIG-GRKKKESTR-PSVSGSSISSRPQPWRP 60
ML D+KPS++I IIC SL+ V ILCCFCIIG G +KK++ + P+ S S SRP
Sbjct: 1 MLLDLKPSILIVIICTSLVVVAAILCCFCIIGCGYRKKDANQLPTPSVSIGRSRPL---- 60
Query: 61 QTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWT--------ERSL--- 120
QTY D+EFG GIRTY + T RSE+SI + R G+QR E SI+T E+S+
Sbjct: 61 QTYRDIEFGQGIRTYRQDSTPRSERSISSDTR--GSQRGEQSIFTDARGFQTSEQSIFPD 120
Query: 121 --SSQRSEPSVRTDRQAGAQ---------RISGIKDGGMAILAGAGAAIATAAAVLGFSS 180
SS+R+E S+ D Q+ + R S IKDGGMAILAGAGAAIATAA VLG SS
Sbjct: 121 TRSSRRNERSILPDTQSSRRSEQIDRQDTRESRIKDGGMAILAGAGAAIATAATVLGLSS 180
Query: 181 ----EGEDGGYIGDGYCGDGSRGDDYADSYGGGGACGAGCGSGGGGGG 201
E DG Y+ + C DG+ GGG G G GS G G
Sbjct: 181 YQGGEDIDGDYVDN--CDDGT---------DGGGVYGGGVGSNSYGNG 211
BLAST of Lag0019464 vs. ExPASy TrEMBL
Match:
A0A6J1CLX2 (ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1)
HSP 1 Score: 106.7 bits (265), Expect = 1.2e-19
Identity = 103/224 (45.98%), Postives = 112/224 (50.00%), Query Frame = 0
Query: 5 MKPSVIIFIICASLIAVVVILCCFCIIGGRKKKESTRPSVSGSSISSRPQPWRPQTY--Y 64
MKP I IIC+S+IA VVILCC CII GRKKKE+ R + + SS PW QTY +
Sbjct: 1 MKPYTTILIICSSVIAAVVILCCLCIIFGRKKKETGRLTPASSSTIGSRLPWPRQTYHVH 60
Query: 65 DVEFGPGIRTYNRQDTQRSEQSIRTTDRQAGTQRSEPSIWTERSLSSQRSEPSVRTDRQA 124
D+E G G RT NRQ
Sbjct: 61 DIEPGQGART-NRQ---------------------------------------------- 120
Query: 125 GAQRISGIKDGGMAILAGAGAAIATAAAVLGFSSEGEDG-------------GYIGDGYC 184
R SGIKDGGMAILAGAG AIATAA + G SSEG +G GY DG C
Sbjct: 121 -GARGSGIKDGGMAILAGAGTAIATAAVIAGLSSEGREGVYGDDCGDGGSSDGYGYDGSC 174
Query: 185 GDGSRGDDYAD-SYGGGGACGAGCGSGGGGGGGCGGACGSGSRL 213
GDG G D D GGGG CG G G GGG GGGCGG CG GS L
Sbjct: 181 GDGDGGGDCGDGGKGGGGGCGDG-GGGGGCGGGCGG-CGGGSEL 174
BLAST of Lag0019464 vs. ExPASy TrEMBL
Match:
A0A5A7VBP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00990 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 8.5e-13
Identity = 97/211 (45.97%), Postives = 114/211 (54.03%), Query Frame = 0
Query: 32 GGRKKKES-TRPSVSGSSISSRPQPWRPQTYYDVEFGPGIRTYNRQDTQRSEQSIRTTDR 91
GG KKK++ P+ S S SRP QTY DVEFG GIRTY + T RSEQSI R
Sbjct: 4 GGYKKKDAHGLPTPSVSIGRSRPL----QTYRDVEFGQGIRTYRQDSTPRSEQSIFPDTR 63
Query: 92 QAGTQRSEPSIW--------TERSL-----SSQRSE------------PSVRTDRQAGAQ 151
G+QR E SI+ +E+S+ SS+R+E S R DRQ
Sbjct: 64 --GSQRDEQSIFPDARGFQTSEQSIFPDTRSSRRNEHLRILPDTQGSRRSERIDRQDNT- 123
Query: 152 RISGIKDGGMAILAGAGAAIATAAAVLGFSS----EGEDGGYIGDGYCGDGSRGDDYADS 211
R S IKDGGMAILAGAGAAIATAA VLG SS E DGGY+ + CGDG+
Sbjct: 124 RESRIKDGGMAILAGAGAAIATAATVLGLSSYQGGEDIDGGYVDN--CGDGTD------- 183
Query: 212 YGGGGACGAGCGSGGGGGGGCGGACGSGSRL 213
GSG GGGG +CG+GS+L
Sbjct: 184 -----------GSGVYGGGGGSNSCGNGSQL 187
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023543717.1 | 4.0e-41 | 60.91 | glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022942031.1 | 2.9e-39 | 59.73 | glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata] | [more] |
KAG6600486.1 | 1.9e-38 | 59.55 | hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAE8649249.1 | 1.2e-21 | 47.81 | hypothetical protein Csa_015081, partial [Cucumis sativus] | [more] |
XP_022142785.1 | 2.5e-19 | 45.98 | ctenidin-3-like [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FMR9 | 1.4e-39 | 59.73 | glycine-rich RNA-binding protein GRP2A-like OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
A0A0A0L0B2 | 5.9e-22 | 47.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081290 PE=4 SV=1 | [more] |
A0A6J1CLX2 | 1.2e-19 | 45.98 | ctenidin-3-like OS=Momordica charantia OX=3673 GN=LOC111012823 PE=4 SV=1 | [more] |
A0A5A7VBP6 | 8.5e-13 | 45.97 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |