Lag0019411 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019411
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Tify domain-containing protein
Location	chr5: 41949018 .. 41949976 (-)
RNA-Seq Expression	Lag0019411
Synteny	Lag0019411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGGAGTTCAGTTTGGAGCTTGGTCTATGGCCATCTTCTTCTGCTTATTCAGAACCAACCTTCCAATTATCTGCAATTCCCATGTGAGAAGAAAATCAATGGCCATTGGGGCCTTTTTCTTTACCTTCTTCTTCTTCTTCTTCATCTTCATCTTCTTCTTCATTTTCTTGTTTGTTTAAAGTTTCATGGAAAGTGGATTTTGGATTTGTAGGATGGCTTTGCCATTTACTTTGAATCATCAGCAGCAGATCATGGTTTTCTATAATGGAACAATTCCACTTTCTGACTTGACTGAACTCCAGGTAAATGCTTGCTTGTTTCCATCAATTTCTCTTCATTCATCTTTTTTTTTTTTTTTTTTTAATGGGGAAAAGTCTGATTACACATGATTCAATTGAATTTGAATTTGTTGTTTCTGACTTGACTTTAGCTTCAATGTAATTAATGACTATGAGGTGATATATATTAAATGTGTGGTTTGGTTTATCCTGACTTTTATAACGTTGAAAAGTACTTTCAACTAACCTTTGTAATTTTATCGAGATATTAAGTGTCCTATGAAAACTACTTTAAAGCATTTTTCTAAAAGATTCTTAAACTTATTAAGATAAAAAAAAGTCATACCGAACTCGGTCTATATCCAAGCTATGATGATCAGTCAAAATATGAAGTAATAAACGAACGATTTTCGTCAACAAATTATCGGATTTTGAGAGACTAAAATGAGGTTTGTTTTGGTTACAATGTTGTAGGCAAGAGCCATATTATGGTATGCAAGCCAAGAGAAGAATAGCAACACGAGATGGGGCAACCCAGAATGGTCGAATTTGCGAATGCCAAAGAGTGGGAATGGGAATGGAAATGCAGGTTTCTCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAGACGAGAATTCAATCGATGTCTCCATATCGCAAATTGTAA

mRNA sequence

ATGGGAAGGGAGTTCAGTTTGGAGCTTGGTCTATGGCCATCTTCTTCTGCTTATTCAGAACCAACCTTCCAATTATCTGCAATTCCCATGATGGCTTTGCCATTTACTTTGAATCATCAGCAGCAGATCATGGTTTTCTATAATGGAACAATTCCACTTTCTGACTTGACTGAACTCCAGGCAAGAGCCATATTATGGTATGCAAGCCAAGAGAAGAATAGCAACACGAGATGGGGCAACCCAGAATGGTCGAATTTGCGAATGCCAAAGAGTGGGAATGGGAATGGAAATGCAGGTTTCTCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAGACGAGAATTCAATCGATGTCTCCATATCGCAAATTGTAA

Coding sequence (CDS)

ATGGGAAGGGAGTTCAGTTTGGAGCTTGGTCTATGGCCATCTTCTTCTGCTTATTCAGAACCAACCTTCCAATTATCTGCAATTCCCATGATGGCTTTGCCATTTACTTTGAATCATCAGCAGCAGATCATGGTTTTCTATAATGGAACAATTCCACTTTCTGACTTGACTGAACTCCAGGCAAGAGCCATATTATGGTATGCAAGCCAAGAGAAGAATAGCAACACGAGATGGGGCAACCCAGAATGGTCGAATTTGCGAATGCCAAAGAGTGGGAATGGGAATGGAAATGCAGGTTTCTCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAGACGAGAATTCAATCGATGTCTCCATATCGCAAATTGTAA

Protein sequence

MGREFSLELGLWPSSSAYSEPTFQLSAIPMMALPFTLNHQQQIMVFYNGTIPLSDLTELQARAILWYASQEKNSNTRWGNPEWSNLRMPKSGNGNGNAGFSIKKSLQRFLQRRKTRIQSMSPYRKL

Homology

[Close]

BLAST of Lag0019411 vs. NCBI nr
Match: XP_008451847.1 (PREDICTED: uncharacterized protein LOC103493010 [Cucumis melo] >TYK16421.1 protein TIFY 5A-like [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 100/130 (76.92%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MGREFSLELGLWPSSSAYSEPTFQLSAIPMMALPFTLNH---QQQIMVFYNGTIPLSDLT 60
           MGREFSLELGLWPS+   SEPTFQ SAIPMMALPFTLNH   QQQIMVFYNG + L D T
Sbjct: 1   MGREFSLELGLWPSA---SEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFT 60

Query: 61  ELQARAILWYASQEKNSNTRWGNPEWSNLRMPKSGNGNGNAGFSIKKSLQRFLQRRK-TR 120
           ELQARAILW  SQE++ N R  NPEW N++M KSGNGNGNAGFSIKKSLQRFLQRRK  R
Sbjct: 61  ELQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGNGNGNAGFSIKKSLQRFLQRRKMRR 120

Query: 121 IQSMSPYRKL 127
           I++MSPY KL
Sbjct: 121 IRTMSPYHKL 127

[Close]

BLAST of Lag0019411 vs. NCBI nr
Match: KAA0062921.1 (protein TIFY 5A-like [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 5.7e-43
Identity = 99/130 (76.15%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 1   MGREFSLELGLWPSSSAYSEPTFQLSAIPMMALPFTLNH---QQQIMVFYNGTIPLSDLT 60
           MGREFSLELGLWPS+   SEPTFQ SAIPMMALPFTLNH   QQQIMVFYNG + L D T
Sbjct: 1   MGREFSLELGLWPSA---SEPTFQFSAIPMMALPFTLNHHQQQQQIMVFYNGALSLCDFT 60

Query: 61  ELQARAILWYASQEKNSNTRWGNPEWSNLRMPKSGNGNGNAGFSIKKSLQRFLQRRK-TR 120
           ELQARAILW  SQE++ N R  NPEW N++M KSG+GNGNAGFSIKKSLQRFLQRRK  R
Sbjct: 61  ELQARAILWIGSQERSRNVRCRNPEWLNMQMLKSGDGNGNAGFSIKKSLQRFLQRRKMRR 120

Query: 121 IQSMSPYRKL 127
           I++MSPY KL
Sbjct: 121 IRTMSPYHKL 127

[Close]

BLAST of Lag0019411 vs. NCBI nr
Match: KAG6577084.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015093.1 Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 102/130 (78.46%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MGREFSLELGLWPSSSAYSEPTFQLSAIP-MMALPFTLNHQQQIMVFYNGTIPLSDLTEL 60
           MGREFSLELGLWPSSS  SEP FQ SAIP MMA+PFTLN QQQIMVFYNGT+ L D TEL
Sbjct: 1   MGREFSLELGLWPSSSV-SEPNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTEL 60

Query: 61  QARAILWYASQEKNS-NTRWGNPEW-SNLRMPKSGNGNGNAGFSIKKSLQRFLQRRKT-R 120
           QARAILW AS+E+ S N+RW +PEW S L+MPKSGNGNGNA F IKKSLQRFLQRRK  R
Sbjct: 61  QARAILWVASRERRSNNSRWTDPEWLSLLQMPKSGNGNGNASFPIKKSLQRFLQRRKARR 120

Query: 121 IQSMSPYRKL 127
           I+SMSPY KL
Sbjct: 121 IRSMSPYHKL 129

[Close]

BLAST of Lag0019411 vs. NCBI nr
Match: XP_022984285.1 (uncharacterized protein LOC111482635 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-42
Identity = 103/135 (76.30%), Postives = 111/135 (82.22%), Query Frame = 0


Query: 1   MGREFSLELGLWPSSSAYSEPTFQLSAIP-MMALPFTLNHQQQIMVFYNGTIPLSDLTEL 60
           MGREFSLELGLWPSSS  SE  FQ SAIP MMA+PFTLN QQQIMVFYNGT+ L D TEL
Sbjct: 1   MGREFSLELGLWPSSSV-SETNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTEL 60

Query: 61  QARAILWYASQEKNSNTRWGNPEW-SNLRMPKS------GNGNGNAGFSIKKSLQRFLQR 120
           QARAILW AS+E++SN+RW NPEW S L+MPKS      GNGNGNAGF IKKSLQRFLQR
Sbjct: 61  QARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQR 120

Query: 121 RKT-RIQSMSPYRKL 127
           RK  RI+SMSPY KL
Sbjct: 121 RKARRIRSMSPYHKL 134

[Close]

BLAST of Lag0019411 vs. NCBI nr
Match: XP_022931286.1 (uncharacterized protein LOC111437514 [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 102/130 (78.46%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MGREFSLELGLWPSSSAYSEPTFQLSAIP-MMALPFTLNHQQQIMVFYNGTIPLSDLTEL 60
           MGREFSLELGLWPSSS  SEP FQ SAIP MMA PFTLN QQQIMVFYNGT+ L D TEL
Sbjct: 1   MGREFSLELGLWPSSSV-SEPNFQFSAIPSMMATPFTLNQQQQIMVFYNGTLSLCDFTEL 60

Query: 61  QARAILWYASQEKNS-NTRWGNPEW-SNLRMPKSGNGNGNAGFSIKKSLQRFLQRRKT-R 120
           QARAILW AS+E++S N+RW +PEW S L+MPKSGNGNGNA F IKKSLQRFLQRRK  R
Sbjct: 61  QARAILWVASRERHSNNSRWTDPEWLSLLQMPKSGNGNGNASFPIKKSLQRFLQRRKARR 120

Query: 121 IQSMSPYRKL 127
           I+SMSPY KL
Sbjct: 121 IRSMSPYHKL 129

[Close]

BLAST of Lag0019411 vs. ExPASy Swiss-Prot
Match: Q8LBM2 (Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 7   LELGLWPSS-SAYSEPTFQLSAIPMMALPFTLNHQQQIMVFYNGTIPL-SDLTELQARAI 66
           LEL L+P+S  + S  T  +        P      Q+I +FYNG +   SD+T LQAR+I
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSI 68

Query: 67  LWYASQEKNSNTRWGNPEWSNLRMPKSGNGNGNAGFSIKKSLQRFLQRRKTRIQSMSPY 124
           +  AS+E  + +     +  N       N   N   S+KKSLQ FLQ+RK RIQ+ SPY
Sbjct: 69  ISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQATSPY 127

The following BLAST results are available for this feature:

BLAST of Lag0019411 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451847.1	1.5e-43	76.92	PREDICTED: uncharacterized protein LOC103493010 [Cucumis melo] >TYK16421.1 prote...	[more]
KAA0062921.1	5.7e-43	76.15	protein TIFY 5A-like [Cucumis melo var. makuwa]	[more]
KAG6577084.1	1.3e-42	78.46	Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015093.1 P...	[more]
XP_022984285.1	1.6e-42	76.30	uncharacterized protein LOC111482635 [Cucurbita maxima]	[more]
XP_022931286.1	2.2e-42	78.46	uncharacterized protein LOC111437514 [Cucurbita moschata]	[more]

BLAST of Lag0019411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBM2	1.6e-08	38.66	Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 103..123 e-value: 2.6E-8 score: 33.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..99
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5B	coord: 38..124
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 38..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019411.1	Lag0019411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus