Lag0019296 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019296
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPWWP domain-containing protein
Locationchr5: 40774544 .. 40775054 (-)
RNA-Seq ExpressionLag0019296
SyntenyLag0019296
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTTTGCGCGAGGGGATCAGCCGGATTGAGGCTGCCGACGGCGGCGAAGTTGGAGGGACGTATGAGGGAGTCGGGCAGATTTGTTAAGAAGAAAGTGGTGATGGAGTTGAATTGGTGAAGCGGCGTGATGATTCGGGCGTTGTTATCGTTAGGAATAGCAAGATAATCTAGTCAAAGTAGCAACAAGCAAAATCTGACCATTTACAAGTTAGATCTTTAAATAATTAGTATTAAACTTGACGCTAAACAATCTGAGAAAGAATGTAAACGAAATAAAAGAATTTAAATCAACCAATTAAGTGAAGAAAAACCCATAAGAATTCATGAGGTTCTAAAGGCCAGATGGCAGCTTTGATGGTCATGCGATGATTCATGATGTTTTATTCCTTCAGAACTTTGATGATGCTCAAAGAGGAAGGGCAAATTTTCCTACAGAGTACTCCTCCTTGGATGAATTGCTAGGCCAACTTCAATTAGTGGCCAGGGATCTAATTGAAGGAATGTAG

mRNA sequence

ATGTGGTTTTGCGCGAGGGGATCAGCCGGATTGAGGCTGCCGACGGCGGCGAAGTTGGAGGGACGTATGAGGGAGTCGGGCAGATTTGTTAAGAAGAAAGTGGTGATGGAGTTGAATTGGCCAGATGGCAGCTTTGATGGTCATGCGATGATTCATGATGTTTTATTCCTTCAGAACTTTGATGATGCTCAAAGAGGAAGGGCAAATTTTCCTACAGAGTACTCCTCCTTGGATGAATTGCTAGGCCAACTTCAATTAGTGGCCAGGGATCTAATTGAAGGAATGTAG

Coding sequence (CDS)

ATGTGGTTTTGCGCGAGGGGATCAGCCGGATTGAGGCTGCCGACGGCGGCGAAGTTGGAGGGACGTATGAGGGAGTCGGGCAGATTTGTTAAGAAGAAAGTGGTGATGGAGTTGAATTGGCCAGATGGCAGCTTTGATGGTCATGCGATGATTCATGATGTTTTATTCCTTCAGAACTTTGATGATGCTCAAAGAGGAAGGGCAAATTTTCCTACAGAGTACTCCTCCTTGGATGAATTGCTAGGCCAACTTCAATTAGTGGCCAGGGATCTAATTGAAGGAATGTAG

Protein sequence

MWFCARGSAGLRLPTAAKLEGRMRESGRFVKKKVVMELNWPDGSFDGHAMIHDVLFLQNFDDAQRGRANFPTEYSSLDELLGQLQLVARDLIEGM
Homology
[Close]
BLAST of Lag0019296 vs. NCBI nr
Match: XP_022999634.1 (uncharacterized protein LOC111493932 isoform X1 [Cucurbita maxima] >XP_022999643.1 uncharacterized protein LOC111493932 isoform X1 [Cucurbita maxima] >XP_022999650.1 uncharacterized protein LOC111493932 isoform X1 [Cucurbita maxima] >XP_022999658.1 uncharacterized protein LOC111493932 isoform X1 [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 30  VKKKVVMELNWPDGSFDGHAMIHDVLFLQNFDDAQRGRANFPTEYSSLDELLGQLQLVAR 89
           + K +      PDGSFDGHA+    +FLQNFDDAQRGR NFPTEYSSLDELLGQLQLVA 
Sbjct: 883 IVKSISERFQRPDGSFDGHAVPESDVFLQNFDDAQRGRVNFPTEYSSLDELLGQLQLVAS 942

Query: 90  D 91
           D
Sbjct: 943 D 943

[Close]
BLAST of Lag0019296 vs. NCBI nr
Match: XP_023554108.1 (uncharacterized protein LOC111811472 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554117.1 uncharacterized protein LOC111811472 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554124.1 uncharacterized protein LOC111811472 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554131.1 uncharacterized protein LOC111811472 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 30  VKKKVVMELNWPDGSFDGHAMIHDVLFLQNFDDAQRGRANFPTEYSSLDELLGQLQLVAR 89
           + K +      PDGSFDGHA+    +FLQNFDDAQRGR NFPTEYSSLDELLGQLQLVA 
Sbjct: 869 IVKSISERFQRPDGSFDGHAVPESDVFLQNFDDAQRGRVNFPTEYSSLDELLGQLQLVAS 928

Query: 90  D 91
           D
Sbjct: 929 D 929

[Close]
BLAST of Lag0019296 vs. NCBI nr
Match: XP_022941663.1 (uncharacterized protein LOC111446954 isoform X3 [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 30  VKKKVVMELNWPDGSFDGHAMIHDVLFLQNFDDAQRGRANFPTEYSSLDELLGQLQLVAR 89
           + K +      PDGSFDGHA+    +FLQNFDDAQRGR NFPTEYSSLDELLGQLQLVA 
Sbjct: 723 IVKSISERFQRPDGSFDGHAVPESDVFLQNFDDAQRGRVNFPTEYSSLDELLGQLQLVAS 782

Query: 90  D 91
           D
Sbjct: 783 D 783

[Close]
BLAST of Lag0019296 vs. NCBI nr
Match: XP_022999676.1 (uncharacterized protein LOC111493932 isoform X3 [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 30  VKKKVVMELNWPDGSFDGHAMIHDVLFLQNFDDAQRGRANFPTEYSSLDELLGQLQLVAR 89
           + K +      PDGSFDGHA+    +FLQNFDDAQRGR NFPTEYSSLDELLGQLQLVA 
Sbjct: 779 IVKSISERFQRPDGSFDGHAVPESDVFLQNFDDAQRGRVNFPTEYSSLDELLGQLQLVAS 838

Query: 90  D 91
           D
Sbjct: 839 D 839

[Close]
BLAST of Lag0019296 vs. NCBI nr
Match: XP_022941658.1 (uncharacterized protein LOC111446954 isoform X1 [Cucurbita moschata] >XP_022941659.1 uncharacterized protein LOC111446954 isoform X1 [Cucurbita moschata] >XP_022941660.1 uncharacterized protein LOC111446954 isoform X1 [Cucurbita moschata] >XP_022941661.1 uncharacterized protein LOC111446954 isoform X1 [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 43/61 (70.49%), Postives = 47/61 (77.05%), Query Frame = 0 

Query: 30  VKKKVVMELNWPDGSFDGHAMIHDVLFLQNFDDAQRGRANFPTEYSSLDELLGQLQLVAR 89
           + K +      PDGSFDGHA+    +FLQNFDDAQRGR NFPTEYSSLDELLGQLQLVA 
Sbjct: 869 IVKSISERFQRPDGSFDGHAVPESDVFLQNFDDAQRGRVNFPTEYSSLDELLGQLQLVAS 928

Query: 90  D 91
           D
Sbjct: 929 D 929

The following BLAST results are available for this feature:
BLAST of Lag0019296 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022999634.16.4e-1570.49uncharacterized protein LOC111493932 isoform X1 [Cucurbita maxima] >XP_022999643... [more]
XP_023554108.16.4e-1570.49uncharacterized protein LOC111811472 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022941663.16.4e-1570.49uncharacterized protein LOC111446954 isoform X3 [Cucurbita moschata][more]
XP_022999676.16.4e-1570.49uncharacterized protein LOC111493932 isoform X3 [Cucurbita maxima][more]
XP_022941658.16.4e-1570.49uncharacterized protein LOC111446954 isoform X1 [Cucurbita moschata] >XP_0229416... [more]
BLAST of Lag0019296 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019296.1Lag0019296.1mRNA