Lag0019254 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019254
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S10-1-like
Location	chr5: 40259898 .. 40262014 (-)
RNA-Seq Expression	Lag0019254
Synteny	Lag0019254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATACCTCTCTTAGCCCATCTCCTCCTTTATCCTTCCAGCAGCCCAATCCATTCCAACACAGCCCAGAGGCCCAATCCATCGAGCCCATCATTCCCAGCCCAGCGGCCCACTCAACGCCCACAAACCCTAGCCGCTTGCTCCCGGTTCTTTCTTTTCACGGCTGCTCCTCTCCCTCCCTTTTGAAGCTTGCTCCACGCCTCCCGCCTCTACTGCTGCTGCTGCCTTCAGTTCTTGCTGAACTTCAACCATGGTACTCCTCTTCTTCAACTCTCTCTTCTCTATCACTGCTTCTAATTTATGTTTGTCTCTGTTTTCTGATTCCAAGAGTCGTGGGGTATTTCGAAAGGAATCGATCTTGGGAATTGTTACCCTTTTGTGTTTTTTGAATTGTTGTAGTGGGTCAGGTTTTATTTCGTCCGATGGGGCGATATTTTTGGCCACGACTTGTTCTTTTCCTTGGATTTTATTTTATTTTTTTCCTCATTCTGTTGTTGATTTAGATTAGCGTTCGCTCTCTCACATCTATTTGATTACTTTCTTCAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGGTATAATTGAACTCAATCACCGTTAAGCTATCTGATTCGAAGATGGTTTTACTTATTCGTTATTGGTGTTATTCCAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTTACCAATGACGGTATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCCGAAATTGTTCCTGCTACCTTGAAAAAACAAGCCAAGCCCACTGGTAGGCCCTTCGGCGGACCATCTGGTGATCGCCCACGGTAAATTATATCTATAATGCTGACCAATTAATTAGGGTTTATTGTTAATTAATCTGTGCTTTTGAACTACGGATTATGGATTTTGTTGTTACAGTCTTAGATTCATAGATGTGTATGTTTATAATGTGATGGTATAATGTAAGGGTTTATTTTAGTGGTTGTTTGTGTAATGTGCATCTGTTTTGATATTTAGCAAGTTGTATGTATTCTTATGATTATTCTGATTGAGTTGTGGTGACTCTTATGAATTAGGGGTCCACCTCGTTTTGAGGGTGGTGAGAGGAGATTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAGTTTGGCGGGGACAAGGGAGGAGCTCCTGCAGATTACAAGCCTTCTTTTGGGGTAAATTTTGAAAAGCCATTAGATATCATCATAGTGCTATACATAATATTGTTGAGACTCTCTACATGAAAATGCTGCCTTTTCCTGCTTGTGTTCAACCTTGGGAAGGTTATTGGAGAGGATCTTAAAAGCATTACAATCATTATTCATGTATCTAGTTAAATGGTAAAATGGTTTTGTCATTATTAAGGAATTCGTTCATGAGTCAATTGGATGATATCTTGTTGTTAGAGATCTGCTCGTGGTTTCTTTTGAAACTGCTCCCTAATCAGTTTGTCTGCTTTGTTAATAAGTTGGACTATAATGTTAAGTAGTAGTTTCTTGTGGCATTTTCCCGTCATGGTCTCTGTTAACTTGCAACCACAAATCTTTCTCTTGGGCTCAAGTGAAAAAGATTACTGATTTCAATGTGGGTTTTAGCTAAGTTGGTTAGGCATATTCAAACTATTTTGATAATAGCTTAACGTGAGGGATAATGGCTTAGAAGAACTACTCTTTTTCAAGAAAGAATAAGAATATTAGAGAAATGGGTGGATGGAACGCCATCCAGGAGAACCATGACATTTTTATGGTATTATAAGATCGGTGTGGAAGTTATTTTGAAGAAATTGGTACTTTATGATATTTGTTTGCTAGTTCTTCTTCGATGGTTTTGTCGATTATTCTCTCATTCCAAAGAATTTCAAATTTCTCAGGGTCCTGGTGGAAGGCCCGGTTTCGGTCGTGGTGCTGGTAGCTATGGTGGAGGAGCTGCCGCAAGCTCAAACCTTCCTTGA

mRNA sequence

ATGTATACCTCTCTTAGCCCATCTCCTCCTTTATCCTTCCAGCAGCCCAATCCATTCCAACACAGCCCAGAGGCCCAATCCATCGAGCCCATCATTCCCAGCCCAGCGGCCCACTCAACGCCCACAAACCCTAGCCGCTTGCTCCCGGTTCTTTCTTTTCACGGCTGCTCCTCTCCCTCCCTTTTGAAGCTTGCTCCACGCCTCCCGCCTCTACTGCTGCTGCTGCCTTCAGTTCTTGCTGAACTTCAACCATGGTACTCCTCTTCTTCAACTCTCTCTTCTCTATCACTGCTTCTAATTTATGTTTGTCTCTGTTTTCTGATTCCAAGAGTCGTGGGATTAGCGTTCGCTCTCTCACATCTATTTGATTACTTTCTTCAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTTACCAATGACGGTATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCCGAAATTGTTCCTGCTACCTTGAAAAAACAAGCCAAGCCCACTGGTAGGCCCTTCGGCGGACCATCTGGTGATCGCCCACGGGGTCCACCTCGTTTTGAGGGTGGTGAGAGGAGATTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAGTTTGGCGGGGACAAGGGAGGAGCTCCTGCAGATTACAAGCCTTCTTTTGGGGGTCCTGGTGGAAGGCCCGGTTTCGGTCGTGGTGCTGGTAGCTATGGTGGAGGAGCTGCCGCAAGCTCAAACCTTCCTTGA

Coding sequence (CDS)

ATGTATACCTCTCTTAGCCCATCTCCTCCTTTATCCTTCCAGCAGCCCAATCCATTCCAACACAGCCCAGAGGCCCAATCCATCGAGCCCATCATTCCCAGCCCAGCGGCCCACTCAACGCCCACAAACCCTAGCCGCTTGCTCCCGGTTCTTTCTTTTCACGGCTGCTCCTCTCCCTCCCTTTTGAAGCTTGCTCCACGCCTCCCGCCTCTACTGCTGCTGCTGCCTTCAGTTCTTGCTGAACTTCAACCATGGTACTCCTCTTCTTCAACTCTCTCTTCTCTATCACTGCTTCTAATTTATGTTTGTCTCTGTTTTCTGATTCCAAGAGTCGTGGGATTAGCGTTCGCTCTCTCACATCTATTTGATTACTTTCTTCAGATTATTTCAGAGAAGAACCGTAGGGAGATCTCCAAGTACCTCTTTCAAGAGGGGGTTTGTTATGCCAAGAAGGACTACAATTTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAGGTTATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAATATGTGCGCGAGACATTTGCTTGGATGCATTACTACTGGTACCTTACCAATGACGGTATTGAGTTCCTCAGGACTTACCTCAATCTTCCTTCCGAAATTGTTCCTGCTACCTTGAAAAAACAAGCCAAGCCCACTGGTAGGCCCTTCGGCGGACCATCTGGTGATCGCCCACGGGGTCCACCTCGTTTTGAGGGTGGTGAGAGGAGATTTGGTGACCGTGATGGCTACCGTGGAGGTCCTCGTGGACCTGGTGGTGAGTTTGGCGGGGACAAGGGAGGAGCTCCTGCAGATTACAAGCCTTCTTTTGGGGGTCCTGGTGGAAGGCCCGGTTTCGGTCGTGGTGCTGGTAGCTATGGTGGAGGAGCTGCCGCAAGCTCAAACCTTCCTTGA

Protein sequence

MYTSLSPSPPLSFQQPNPFQHSPEAQSIEPIIPSPAAHSTPTNPSRLLPVLSFHGCSSPSLLKLAPRLPPLLLLLPSVLAELQPWYSSSSTLSSLSLLLIYVCLCFLIPRVVGLAFALSHLFDYFLQIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGERRFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNLP

Homology

[Close]

BLAST of Lag0019254 vs. NCBI nr
Match: XP_004146529.1 (40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein Csa_014962 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 4.5e-94
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGPGGEFGGDKGGAPADY+PSFGGPGGRPGFGRGAGSYGGGAA SSNL
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. NCBI nr
Match: XP_022985005.1 (40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_022985006.1 40S ribosomal protein S10-1-like [Cucurbita maxima])

HSP 1 Score: 355.1 bits (910), Expect = 5.9e-94
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGP GEFGGDKGGAPADY+PSFGGPGGRPGFGRGAGSYGGGAAASSNL
Sbjct: 122 RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. NCBI nr
Match: TYK16623.1 (40S ribosomal protein S10-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 1.3e-93
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 25  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 84

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 85  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 144

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGPGGEFGGDKGGAPADY+PSFGGPGGRPGFGRGAG YGGGAA SSNL
Sbjct: 145 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNL 204

Query: 308 P 309
           P
Sbjct: 205 P 205

[Close]

BLAST of Lag0019254 vs. NCBI nr
Match: XP_008452010.1 (PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 1.3e-93
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGPGGEFGGDKGGAPADY+PSFGGPGGRPGFGRGAG YGGGAA SSNL
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. NCBI nr
Match: XP_022982956.1 (40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_023521589.1 40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >XP_023528948.1 40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.6 bits (906), Expect = 1.7e-93
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGP GEFGGDKGGAPADY+PSFGGPGGRPGFGRGAGSYGGGA ASSNL
Sbjct: 122 RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.6e-73
Identity = 141/181 (77.90%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGPPR +G   
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRG     G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S  
Sbjct: 122 RFGDRDGYRGGPRG-----GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSGF 177

Query: 308 P 309
           P
Sbjct: 182 P 177

[Close]

BLAST of Lag0019254 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.8e-73
Identity = 143/180 (79.44%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFG-GPSGDRPRGPPRFEGGE 247
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGPPRFEG  
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 248 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGR-GAGSYGGGAAASS 306
            RFGDRDGYRGGPRG  G+FGG+KGGAPA+++PSF   GGRPGFGR G G +G G  +SS
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of Lag0019254 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.8e-73
Identity = 143/180 (79.44%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFG-GPSGDRPRGPPRFEGGE 247
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGPPRFEG  
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 248 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGR-GAGSYGGGAAASS 306
            RFGDRDGYRGGPRG  G+FGG+KGGAPA+++PSF   GGRPGFGR G G +G G  +SS
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of Lag0019254 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 271.2 bits (692), Expect = 1.5e-71
Identity = 145/182 (79.67%), Postives = 157/182 (86.26%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RG PR EGG+R
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRG-PRHEGGDR 121

Query: 248 -RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSN 307
            RFGDRDGYR GPR  GGEFGG+KGGAPADY+PSF G G   GFGRGAG Y   A + S 
Sbjct: 122 PRFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAAAPSGSG 179

Query: 308 LP 309
           LP
Sbjct: 182 LP 179

[Close]

BLAST of Lag0019254 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.8e-68
Identity = 145/180 (80.56%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 187
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 188 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGE 247
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR + GE
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGD-GE 121

Query: 248 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSF-GGPGG-RPGFGRGAGSYGGGAAAS 305
           RRFGDRDGYRGGP+  GGE+ GDK GAPADY+P F GG GG R GFGRGAG +GGGAA S
Sbjct: 122 RRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGS 177

[Close]

BLAST of Lag0019254 vs. ExPASy TrEMBL
Match: A0A0A0KUQ3 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 2.2e-94
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGPGGEFGGDKGGAPADY+PSFGGPGGRPGFGRGAGSYGGGAA SSNL
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAPSSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. ExPASy TrEMBL
Match: A0A6J1JA51 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.9e-94
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGP GEFGGDKGGAPADY+PSFGGPGGRPGFGRGAGSYGGGAAASSNL
Sbjct: 122 RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAAASSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. ExPASy TrEMBL
Match: A0A5D3CXK7 (40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004510 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 6.4e-94
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 25  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 84

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 85  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 144

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGPGGEFGGDKGGAPADY+PSFGGPGGRPGFGRGAG YGGGAA SSNL
Sbjct: 145 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNL 204

Query: 308 P 309
           P
Sbjct: 205 P 205

[Close]

BLAST of Lag0019254 vs. ExPASy TrEMBL
Match: A0A1S3BST3 (40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 6.4e-94
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGPGGEFGGDKGGAPADY+PSFGGPGGRPGFGRGAG YGGGAA SSNL
Sbjct: 122 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAAPSSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. ExPASy TrEMBL
Match: A0A6J1J0T0 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481645 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 8.3e-94
Identity = 176/181 (97.24%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKP GRPFGGP GDRPRGPPRFEGGER
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGGER 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRGP GEFGGDKGGAPADY+PSFGGPGGRPGFGRGAGSYGGGA ASSNL
Sbjct: 122 RFGDRDGYRGGPRGPAGEFGGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGGAGASSNL 181

Query: 308 P 309
           P
Sbjct: 182 P 182

[Close]

BLAST of Lag0019254 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 276.2 bits (705), Expect = 3.3e-74
Identity = 141/181 (77.90%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGPPR +G   
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
           RFGDRDGYRGGPRG     G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S  
Sbjct: 122 RFGDRDGYRGGPRG-----GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSGF 177

Query: 308 P 309
           P
Sbjct: 182 P 177

[Close]

BLAST of Lag0019254 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 271.2 bits (692), Expect = 1.0e-72
Identity = 145/182 (79.67%), Postives = 157/182 (86.26%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RG PR EGG+R
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRG-PRHEGGDR 121

Query: 248 -RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSN 307
            RFGDRDGYR GPR  GGEFGG+KGGAPADY+PSF G G   GFGRGAG Y   A + S 
Sbjct: 122 PRFGDRDGYRAGPRA-GGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAAAPSGSG 179

Query: 308 LP 309
           LP
Sbjct: 182 LP 179

[Close]

BLAST of Lag0019254 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 259.2 bits (661), Expect = 4.1e-69
Identity = 145/180 (80.56%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 187
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 188 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGE 247
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGPPR + GE
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGD-GE 121

Query: 248 RRFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSF-GGPGG-RPGFGRGAGSYGGGAAAS 305
           RRFGDRDGYRGGP+  GGE+ GDK GAPADY+P F GG GG R GFGRGAG +GGGAA S
Sbjct: 122 RRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGS 177

[Close]

BLAST of Lag0019254 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 224.9 bits (572), Expect = 8.6e-59
Identity = 119/181 (65.75%), Postives = 130/181 (71.82%), Query Frame = 0


Query: 128 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 187
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 188 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGPSGDRPRGPPRFEGGER 247
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP G              
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPRG-------------- 121

Query: 248 RFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSFGGPGGRPGFGRGAGSYGGGAAASSNL 307
                              G +KGGAPAD++PSF G GGRPGFGRGAG Y   A + S  
Sbjct: 122 -------------------GDEKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSGF 149

Query: 308 P 309
           P
Sbjct: 182 P 149

[Close]

BLAST of Lag0019254 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-49
Identity = 110/135 (81.48%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 172 MQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPTGRPFGGP 231
           MQSFKSKEYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG 
Sbjct: 1   MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG- 60

Query: 232 SGDRPRGPPRFEGGERRFGDRDGYRGGPRGPGGEFGGDKGGAPADYKPSF-GGPGG-RPG 291
            GDRPRGPPR + GERRFGDRDGYRGGP+  GGE+ GDK GAPADY+P F GG GG R G
Sbjct: 61  GGDRPRGPPRGD-GERRFGDRDGYRGGPKS-GGEY-GDKAGAPADYQPGFRGGAGGARQG 120

Query: 292 FGRGAGSYGGGAAAS 305
           FGRGAG +GGGAA S
Sbjct: 121 FGRGAGGFGGGAAGS 131

The following BLAST results are available for this feature:

BLAST of Lag0019254 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146529.1	4.5e-94	97.79	40S ribosomal protein S10-1 [Cucumis sativus] >KGN53350.1 hypothetical protein C...	[more]
XP_022985005.1	5.9e-94	97.79	40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_022985006.1 40S ribosoma...	[more]
TYK16623.1	1.3e-93	97.24	40S ribosomal protein S10-1-like [Cucumis melo var. makuwa]	[more]
XP_008452010.1	1.3e-93	97.24	PREDICTED: 40S ribosomal protein S10-1-like [Cucumis melo]	[more]
XP_022982956.1	1.7e-93	97.24	40S ribosomal protein S10-1-like [Cucurbita maxima] >XP_023521589.1 40S ribosoma...	[more]

BLAST of Lag0019254 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW09	4.6e-73	77.90	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
P0DKK8	7.8e-73	79.44	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	7.8e-73	79.44	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9LTF2	1.5e-71	79.67	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]
Q9FFS8	5.8e-68	80.56	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]

BLAST of Lag0019254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUQ3	2.2e-94	97.79	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049090...	[more]
A0A6J1JA51	2.9e-94	97.79	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111483100 PE=...	[more]
A0A5D3CXK7	6.4e-94	97.24	40S ribosomal protein S10-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BST3	6.4e-94	97.24	40S ribosomal protein S10-1-like OS=Cucumis melo OX=3656 GN=LOC103493145 PE=4 SV...	[more]
A0A6J1J0T0	8.3e-94	97.24	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481645 PE=...	[more]

BLAST of Lag0019254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25740.1	3.3e-74	77.90	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	1.0e-72	79.67	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	4.1e-69	80.56	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	8.6e-59	65.75	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	1.2e-49	81.48	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 128..230 e-value: 6.2E-46 score: 156.6
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 129..220 e-value: 3.6E-42 score: 142.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..308
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 88..308
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 88..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019254.1	Lag0019254.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome