Lag0019211 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019211
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Zinc transporter 6
Location	chr5: 39874205 .. 39874735 (-)
RNA-Seq Expression	Lag0019211
Synteny	Lag0019211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTAGGTGGCTGCATTGCTCAGGTCATTTTCGATTTCTGTGTCTAATAGATTCCTGAACTTCTTTTATTAAACACAGAATCTTGCTTGCAGGCAGGATTCAGTTTCACAACGACGTCGTACATGTGCTTCATGTTCTCGGTGACGACGCCGATGGGGATAGTGTTGGGAATAGTACTGTTTTCAATTATAGGTTACGACGACAGCAGTCCGAAAGCTCTGATAATGGAGGGTTTATTGGGTTCGTTTTCATCTGGGATTCTCATATACATGGCTCTTGTTGATCTAATAGCCGTTGATTTTTTCCACAACAAGATGATGAGCTCGAATCAACGGCTGAAGAAGGCTTCTTTTATTGCCTTGTTGCTTGGGTCTGCTTCCATGTCGGTTTTAGCTATTTTTCAAATCCTACCTATTTTTTTTAGTCATATATCTCGTTGCCCCAATATAAATCAAACCCAAGACCAAATAATTGAACCCAAGACCAATAAAGCCCAAGGCCAAGTTGTTAGGCCCAAAAGTCACTAG

mRNA sequence

ATGGGCCTAGGTGGCTGCATTGCTCAGGCAGGATTCAGTTTCACAACGACGTCGTACATGTGCTTCATGTTCTCGGTGACGACGCCGATGGGGATAGTGTTGGGAATAGTACTGTTTTCAATTATAGGTTACGACGACAGCAGTCCGAAAGCTCTGATAATGGAGGGTTTATTGGGTTCGTTTTCATCTGGGATTCTCATATACATGGCTCTTGTTGATCTAATAGCCGTTGATTTTTTCCACAACAAGATGATGAGCTCGAATCAACGGCTGAAGAAGGCTTCTTTTATTGCCTTGTTGCTTGGGTCTGCTTCCATGTCGGTTTTAGCTATTTTTCAAATCCTACCTATTTTTTTTAGTCATATATCTCGTTGCCCCAATATAAATCAAACCCAAGACCAAATAATTGAACCCAAGACCAATAAAGCCCAAGGCCAAGTTGTTAGGCCCAAAAGTCACTAG

Coding sequence (CDS)

ATGGGCCTAGGTGGCTGCATTGCTCAGGCAGGATTCAGTTTCACAACGACGTCGTACATGTGCTTCATGTTCTCGGTGACGACGCCGATGGGGATAGTGTTGGGAATAGTACTGTTTTCAATTATAGGTTACGACGACAGCAGTCCGAAAGCTCTGATAATGGAGGGTTTATTGGGTTCGTTTTCATCTGGGATTCTCATATACATGGCTCTTGTTGATCTAATAGCCGTTGATTTTTTCCACAACAAGATGATGAGCTCGAATCAACGGCTGAAGAAGGCTTCTTTTATTGCCTTGTTGCTTGGGTCTGCTTCCATGTCGGTTTTAGCTATTTTTCAAATCCTACCTATTTTTTTTAGTCATATATCTCGTTGCCCCAATATAAATCAAACCCAAGACCAAATAATTGAACCCAAGACCAATAAAGCCCAAGGCCAAGTTGTTAGGCCCAAAAGTCACTAG

Protein sequence

MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGSFSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLAIFQILPIFFSHISRCPNINQTQDQIIEPKTNKAQGQVVRPKSH

Homology

[Close]

BLAST of Lag0019211 vs. NCBI nr
Match: XP_023007290.1 (zinc transporter 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-47
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLG+VLFSI GYDDSSPKALIMEGLLGS
Sbjct: 231 MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGMVLFSITGYDDSSPKALIMEGLLGS 290

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLAIF 113
           FSSGILIYMALVDLIAVDFFHNKMMSSNQRLK+  F+ALLLGSASMSVLA++
Sbjct: 291 FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKRGCFVALLLGSASMSVLALW 342

[Close]

BLAST of Lag0019211 vs. NCBI nr
Match: XP_023532256.1 (zinc transporter 6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLG+VLFSI GYDDSSPKALIMEGLLGS
Sbjct: 231 MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGMVLFSITGYDDSSPKALIMEGLLGS 290

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLAIF 113
           FSSGILIYMALVDLIAVDFFHNKMMSSNQ LK+  F+ALLLGSASMSVLA++
Sbjct: 291 FSSGILIYMALVDLIAVDFFHNKMMSSNQGLKRGCFVALLLGSASMSVLALW 342

[Close]

BLAST of Lag0019211 vs. NCBI nr
Match: XP_022948010.1 (zinc transporter 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLG+VLFSI GYDDSSPKALIMEGLLGS
Sbjct: 231 MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGMVLFSITGYDDSSPKALIMEGLLGS 290

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLAIF 113
           FSSGILIYMALVDLIAVDFFHNKMMSSNQ LK+  F+ALLLGSASMSVLA++
Sbjct: 291 FSSGILIYMALVDLIAVDFFHNKMMSSNQGLKRGCFVALLLGSASMSVLALW 342

[Close]

BLAST of Lag0019211 vs. NCBI nr
Match: KAG6605404.1 (Zinc transporter 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLG+VLFSI GYDDSSPKALIMEGLLGS
Sbjct: 231 MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGMVLFSITGYDDSSPKALIMEGLLGS 290

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLAIF 113
           FSSGILIYMALVDLIAVDFFHNKMMSSNQ LK+  F+ALLLGSASMSVLA++
Sbjct: 291 FSSGILIYMALVDLIAVDFFHNKMMSSNQGLKRGCFVALLLGSASMSVLALW 342

[Close]

BLAST of Lag0019211 vs. NCBI nr
Match: XP_022148327.1 (zinc transporter 6, chloroplastic [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-45
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           MGLGGCIAQAGFS  TTSYMCFMFSVTTPMGIVLG++LFSI GYDDSSPKALIMEGLLGS
Sbjct: 111 MGLGGCIAQAGFSLATTSYMCFMFSVTTPMGIVLGMLLFSITGYDDSSPKALIMEGLLGS 170

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLAIF 113
           FSSGILIYMALVDLIAVDFFHNKMM+SNQ LKKASFIAL LGSASMSVLA++
Sbjct: 171 FSSGILIYMALVDLIAVDFFHNKMMTSNQLLKKASFIALTLGSASMSVLALW 222

[Close]

BLAST of Lag0019211 vs. ExPASy Swiss-Prot
Match: Q6L8F9 (Zinc transporter 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ZIP6 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-40
Identity = 82/112 (73.21%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           MGLGGCIAQAGF   T  YMC MFSVTTP+GI+LG+ +F + GYDDSSP ALI+EGLLGS
Sbjct: 283 MGLGGCIAQAGFGIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNALIIEGLLGS 342

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLAIF 113
            SSGIL+YMALVDLI++DFFHNKMMSS+ +LKK S++AL+LGSASMS+LA++
Sbjct: 343 LSSGILVYMALVDLISLDFFHNKMMSSSNKLKKVSYVALVLGSASMSILALW 394

[Close]

BLAST of Lag0019211 vs. ExPASy Swiss-Prot
Match: O64738 (Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ZIP6 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.0e-38
Identity = 83/116 (71.55%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           +GLGGCIAQAGF   T  YMC MF+VTTP+GIVLG+V+F+  GYDD +P ALIMEGLLGS
Sbjct: 225 LGLGGCIAQAGFKAGTVVYMCLMFAVTTPLGIVLGMVIFAATGYDDQNPNALIMEGLLGS 284

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMS----SNQRLKKASFIALLLGSASMSVLAIF 113
           FSSGILIYMALVDLIA+DFFHNKM++    S  RLKK  F+AL+LGSASMS+LA++
Sbjct: 285 FSSGILIYMALVDLIALDFFHNKMLTTCGESGSRLKKLCFVALVLGSASMSLLALW 340

[Close]

BLAST of Lag0019211 vs. ExPASy Swiss-Prot
Match: O23039 (Zinc transporter 5 OS=Arabidopsis thaliana OX=3702 GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           +GLGGCIAQ  F+  + + M   FSVTTP+GI +G+ + S   YDDSSP ALI++G+L +
Sbjct: 251 LGLGGCIAQGNFNCMSITIMSIFFSVTTPVGIAVGMAISS--SYDDSSPTALIVQGVLNA 310

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLA 111
            S+GILIYM+LVD +A DF H K M SN RL+  + I+LL+G+  MS+LA
Sbjct: 311 ASAGILIYMSLVDFLAADFMHPK-MQSNTRLQIMAHISLLVGAGVMSLLA 357

[Close]

BLAST of Lag0019211 vs. ExPASy Swiss-Prot
Match: Q6L8G1 (Fe(2+) transport protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=IRT2 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-20
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           MGLGGCI QAG+   T S + F FS TTP GI LG+ L  +  Y DSSP AL++ GLL +
Sbjct: 261 MGLGGCILQAGYGGRTRSALVFFFSTTTPFGIALGLALTRV--YSDSSPTALVVVGLLNA 320

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLA 111
            S+G+L YMALV+L+A DF   K +  N RL+ A+ +A+LLG+  MSV+A
Sbjct: 321 ASAGLLHYMALVELLAADFMGPK-LQGNVRLQLAASLAILLGAGGMSVMA 367

[Close]

BLAST of Lag0019211 vs. ExPASy Swiss-Prot
Match: Q9SLG3 (Zinc transporter 3 OS=Arabidopsis thaliana OX=3702 GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-20
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MGLGGCIAQAGFSFTTTSYMCFMFSVTTPMGIVLGIVLFSIIGYDDSSPKALIMEGLLGS 60
           +GLGGCIAQ  F   + + M   F++TTP+GIV+G+ + +   YD+SSP ALI++G+L +
Sbjct: 230 LGLGGCIAQGKFKCLSVTIMSTFFAITTPIGIVVGMGIAN--SYDESSPTALIVQGVLNA 289

Query: 61  FSSGILIYMALVDLIAVDFFHNKMMSSNQRLKKASFIALLLGSASMSVLA 111
            S+GILIYM+LVDL+A DF H K M SN  L+  + IALLLG+  MS+LA
Sbjct: 290 ASAGILIYMSLVDLLAADFTHPK-MQSNTGLQIMAHIALLLGAGLMSLLA 336

The following BLAST results are available for this feature:

BLAST of Lag0019211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007290.1	3.5e-47	92.86	zinc transporter 6, chloroplastic [Cucurbita maxima]	[more]
XP_023532256.1	2.3e-46	91.96	zinc transporter 6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022948010.1	2.3e-46	91.96	zinc transporter 6, chloroplastic [Cucurbita moschata]	[more]
KAG6605404.1	2.3e-46	91.96	Zinc transporter 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022148327.1	2.5e-45	91.07	zinc transporter 6, chloroplastic [Momordica charantia]	[more]

BLAST of Lag0019211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6L8F9	3.3e-40	73.21	Zinc transporter 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ZIP6 PE=2 SV=1	[more]
O64738	9.0e-38	71.55	Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ZIP6 PE=3 S...	[more]
O23039	1.2e-21	53.64	Zinc transporter 5 OS=Arabidopsis thaliana OX=3702 GN=ZIP5 PE=2 SV=1	[more]
Q6L8G1	2.9e-20	52.73	Fe(2+) transport protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=IRT2 PE=2...	[more]
Q9SLG3	3.8e-20	52.73	Zinc transporter 3 OS=Arabidopsis thaliana OX=3702 GN=ZIP3 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003689	Zinc/iron permease	PFAM	PF02535	Zip	coord: 1..110 e-value: 3.5E-23 score: 82.4
None	No IPR available	PANTHER	PTHR11040:SF26	ZINC TRANSPORTER 6, CHLOROPLASTIC	coord: 1..112
None	No IPR available	PANTHER	PTHR11040	ZINC/IRON TRANSPORTER	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019211.1	Lag0019211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071577	zinc ion transmembrane transport
biological_process	GO:0030001	metal ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005385	zinc ion transmembrane transporter activity
molecular_function	GO:0046873	metal ion transmembrane transporter activity