Lag0019201 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019201
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionultraviolet-B receptor UVR8
Locationchr5: 39787423 .. 39787743 (-)
RNA-Seq ExpressionLag0019201
SyntenyLag0019201
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCGTGGAATTCGAATTCTTGCGAGGGAGCAGAGAAGGACTGTCTCAATCATCACCTTCGGAAGAAGATGTATAAGCAACAGGGCGGTTATGAGCTTTGGGGATGGTAGCCATGGCGCAATCGGCTTGCCCACTTCGCTCACGGGCATTGGTGGCGCCGCTTACGAGCCCACCGCCGTCCCGGGGCTTCCTCCCGATGTTACCAGTGTAGCCGCAGGGCACTATCACTCTCTCGCTGTCGATTCGCAAGGCCGTCTCTGGGCTTGGGGCAGAGACCATGAAGCGCAGCTTGGCCGGGGCTTTGATTCCCCTAGGTAG

mRNA sequence

ATGATTCGTGGAATTCGAATTCTTGCGAGGGAGCAGAGAAGGACTGTCTCAATCATCACCTTCGGAAGAAGATGTATAAGCAACAGGGCGGTTATGAGCTTTGGGGATGGTAGCCATGGCGCAATCGGCTTGCCCACTTCGCTCACGGGCATTGGTGGCGCCGCTTACGAGCCCACCGCCGTCCCGGGGCTTCCTCCCGATGTTACCAGTGTAGCCGCAGGGCACTATCACTCTCTCGCTGTCGATTCGCAAGGCCGTCTCTGGGCTTGGGGCAGAGACCATGAAGCGCAGCTTGGCCGGGGCTTTGATTCCCCTAGGTAG

Coding sequence (CDS)

ATGATTCGTGGAATTCGAATTCTTGCGAGGGAGCAGAGAAGGACTGTCTCAATCATCACCTTCGGAAGAAGATGTATAAGCAACAGGGCGGTTATGAGCTTTGGGGATGGTAGCCATGGCGCAATCGGCTTGCCCACTTCGCTCACGGGCATTGGTGGCGCCGCTTACGAGCCCACCGCCGTCCCGGGGCTTCCTCCCGATGTTACCAGTGTAGCCGCAGGGCACTATCACTCTCTCGCTGTCGATTCGCAAGGCCGTCTCTGGGCTTGGGGCAGAGACCATGAAGCGCAGCTTGGCCGGGGCTTTGATTCCCCTAGGTAG

Protein sequence

MIRGIRILAREQRRTVSIITFGRRCISNRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTAVPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR
Homology
BLAST of Lag0019201 vs. NCBI nr
Match: XP_022984599.1 (ultraviolet-B receptor UVR8 [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 95/106 (89.62%), Postives = 99/106 (93.40%), Query Frame = 0

Query: 1   MIRGIRILAREQRRTVSIITFGRRCISNRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTA 60
           MIRGIRILA EQRR +SII FGRRC+S+RAVMSFGDGSHGAIGLPTSLTGIGGAAYEPT 
Sbjct: 1   MIRGIRILAGEQRRALSIIPFGRRCLSSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTT 60

Query: 61  VPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR 107
           VPGLPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGRGF SPR
Sbjct: 61  VPGLPPDVTSVAAGHYHSLAIDSQGCLWAWGRDQEAQLGRGFASPR 106

BLAST of Lag0019201 vs. NCBI nr
Match: XP_038905737.1 (ultraviolet-B receptor UVR8 [Benincasa hispida])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 95/106 (89.62%), Postives = 99/106 (93.40%), Query Frame = 0

Query: 1   MIRGIRILAREQRRTVSIITFGRRCISNRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTA 60
           MIRGIRILA+E +R VSII F RRCIS+RAVMSFGDGSHGAIGLPTSLTGIGGAAYEPT 
Sbjct: 2   MIRGIRILAKEHQRAVSIIPFRRRCISSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTT 61

Query: 61  VPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR 107
           VPGLPPDVTS+AAGHYHSLAVDSQG LWAWGRDHEAQLGRGF SPR
Sbjct: 62  VPGLPPDVTSIAAGHYHSLAVDSQGCLWAWGRDHEAQLGRGFASPR 107

BLAST of Lag0019201 vs. NCBI nr
Match: XP_022929402.1 (ultraviolet-B receptor UVR8 [Cucurbita moschata])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MIRGIRILAREQRRTVSIITFGRRCISNRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTA 60
           MIRGIRILA EQRR +SII FGRRC+S+RAVMSFGDGSHGAIGLPTSLTGIGGAAYEPT 
Sbjct: 1   MIRGIRILAGEQRRALSIIPFGRRCLSSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTT 60

Query: 61  VPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR 107
           VP LPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGRGF SPR
Sbjct: 61  VPVLPPDVTSVAAGHYHSLAIDSQGCLWAWGRDQEAQLGRGFASPR 106

BLAST of Lag0019201 vs. NCBI nr
Match: KAG6577213.1 (Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MIRGIRILAREQRRTVSIITFGRRCISNRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTA 60
           MIRGIRILA EQRR +SII FGRRC+S+RAVMSFGDGSHGAIGLPTSLTGIGGAAYEPT 
Sbjct: 1   MIRGIRILAGEQRRALSIIPFGRRCLSSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTT 60

Query: 61  VPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR 107
           VP LPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGRGF SPR
Sbjct: 61  VPVLPPDVTSVAAGHYHSLAIDSQGCLWAWGRDQEAQLGRGFASPR 106

BLAST of Lag0019201 vs. NCBI nr
Match: KAG7015304.1 (Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-44
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MIRGIRILAREQRRTVSIITFGRRCISNRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTA 60
           MIRGI+ILA EQRR +SII FGRRC+S+RAVMSFGDGSHGAIGLPTSLTGIGGAAYEPT 
Sbjct: 1   MIRGIQILAGEQRRALSIIPFGRRCLSSRAVMSFGDGSHGAIGLPTSLTGIGGAAYEPTT 60

Query: 61  VPGLPPDVTSVAAGHYHSLAVDSQGRLWAWGRDHEAQLGRGFDSPR 107
           VP LPPDVTSVAAGHYHSLA+DSQG LWAWGRD EAQLGRGF SPR
Sbjct: 61  VPVLPPDVTSVAAGHYHSLAIDSQGCLWAWGRDQEAQLGRGFASPR 106

BLAST of Lag0019201 vs. ExPASy Swiss-Prot
Match: F2Z461 (E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-05
Identity = 27/75 (36.00%), Postives = 42/75 (56.00%), Query Frame = 0

Query: 31  VMSFGDGSHGAIGLPTSLTGIGGAAYEPTAVPGLPP-DVTSVAAGHYHSLAVDSQGRLWA 90
           V ++G GS G +G+          ++ PT +  L    +  V+ GHYHSLA+   G +++
Sbjct: 95  VFAWGAGSEGQLGIGE----FKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFS 154

Query: 91  WGRDHEAQLGRGFDS 105
           WGR+ E QLG G +S
Sbjct: 155 WGRNSEGQLGLGKNS 165

BLAST of Lag0019201 vs. ExPASy Swiss-Prot
Match: D3ZGQ5 (Serine/threonine-protein kinase Nek8 OS=Rattus norvegicus OX=10116 GN=Nek8 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 25  CISNRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTAVPG-LPPDVTSVAAGHYHSLAVD 84
           C+++R  +M+FG GS+G +G   SLT I     +PT V   L  ++  VA G  H LA+ 
Sbjct: 411 CLTDRGIIMTFGSGSNGCLG-HGSLTDIS----QPTIVEALLGYEMVQVACGASHVLALS 470

Query: 85  SQGRLWAWGRDHEAQLGRG 102
           + G L+AWGR    +LG G
Sbjct: 471 ADGELFAWGRGDGGRLGLG 484

BLAST of Lag0019201 vs. ExPASy Swiss-Prot
Match: Q91ZR4 (Serine/threonine-protein kinase Nek8 OS=Mus musculus OX=10090 GN=Nek8 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.5e-04
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 25  CISNRA-VMSFGDGSHGAIGLPTSLTGIGGAAYEPTAVPG-LPPDVTSVAAGHYHSLAVD 84
           C+++R  +M+FG GS+G +G   +LT I     +PT V   L  ++  VA G  H LA+ 
Sbjct: 411 CLTDRGIIMTFGSGSNGCLG-HGNLTDIS----QPTIVEALLGYEMVQVACGASHVLALS 470

Query: 85  SQGRLWAWGRDHEAQLGRG 102
           + G L+AWGR    +LG G
Sbjct: 471 TDGELFAWGRGDGGRLGLG 484

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022984599.11.0e-4589.62ultraviolet-B receptor UVR8 [Cucurbita maxima][more]
XP_038905737.11.0e-4589.62ultraviolet-B receptor UVR8 [Benincasa hispida][more]
XP_022929402.11.1e-4488.68ultraviolet-B receptor UVR8 [Cucurbita moschata][more]
KAG6577213.11.1e-4488.68Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7015304.13.3e-4487.74Ultraviolet-B receptor UVR8 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
F2Z4614.1e-0536.00E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1[more]
D3ZGQ51.6e-0440.51Serine/threonine-protein kinase Nek8 OS=Rattus norvegicus OX=10116 GN=Nek8 PE=1 ... [more]
Q91ZR43.5e-0439.24Serine/threonine-protein kinase Nek8 OS=Mus musculus OX=10090 GN=Nek8 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 30..46
score: 34.31
coord: 68..81
score: 33.33
coord: 87..103
score: 30.39
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 71..81
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 29..84
score: 13.157299
NoneNo IPR availablePFAMPF13540RCC1_2coord: 68..94
e-value: 1.2E-8
score: 34.5
NoneNo IPR availablePANTHERPTHR22870:SF365REGULATOR OF CHROMOSOME CONDENSATION (CELL CYCLE REGULATORY PROTEIN)-RELATEDcoord: 12..103
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 12..103
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 16..106
e-value: 2.4E-18
score: 68.2
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 28..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019201.1Lag0019201.1mRNA