Lag0019081 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019081
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr5: 38389223 .. 38389863 (-)
RNA-Seq ExpressionLag0019081
SyntenyLag0019081
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGTTTTGGTGGAGTGGGGTGGAGGAAGATCGGAGGATCCATTGGGTTAGTTGGAAAACGTTGTCTAAGCCAAAAAGCTTTGGTGGTACGGGGGTTAGGGACTTTGAGATTTTTAATCAAGTTTTGCTGGCTAAGTAGTGTTGCAGGATCCTTCAGAAGCCTTCATCTTTCCTTGCTCAGGTTTTGAGGGGGCGGTATTATCCGTCTTCAGATTTTTTGGAGGCTACAGTGGGTTCCCGAGCATCCTTTATCTGGAGGAGTCTAATGTGGGGGAAGGTACTTTTGGAGAAGGGTCTCAGATGGAGAATAGAGAGCGGTGAGAGGATGCATGTTTACAGATCCAATTGGATTCCTTGCGATGCCAGTCGAAGGATTTTATCCGCGGTCACGTTGCCACCAGATTCCCGAGTGGCTGATTTGCTAACGGCATCCAGGCAATGGAATGAGGGTCTGCTAAAGCAACACTTCAGCCCCCATGAGGTTAGTTACATTCTCTCTATACATATCCACCTTGGTGTATGTGAGGACTCTGTTATATGGCATTTTGAGAAGTCTAGTTTGTGCTCGGTCAAAAGCGGGTATCGGCTAGGCCAATCGGGTGTCGTAGCTCGAAATCTGTCCTTATCGTCCCTTGA

mRNA sequence

ATGGCAAGGTTTTGGTGGAGTGGGGTGGAGGAAGATCGGAGGATCCATTGGGTTTTGAGGGGGCGGTATTATCCGTCTTCAGATTTTTTGGAGGCTACAGTGGGTTCCCGAGCATCCTTTATCTGGAGGAGTCTAATGTGGGGGAAGGTACTTTTGGAGAAGGGTCTCAGATGGAGAATAGAGAGCGGTGAGAGGATGCATGTTTACAGATCCAATTGGATTCCTTGCGATGCCAGTCGAAGGATTTTATCCGCGGTCACGTTGCCACCAGATTCCCGAGTGGCTGATTTGCTAACGGCATCCAGGCAATGGAATGAGGGTCTGCTAAAGCAACACTTCAGCCCCCATGAGTTTGTGCTCGGTCAAAAGCGGGTATCGGCTAGGCCAATCGGGTGTCGTAGCTCGAAATCTGTCCTTATCGTCCCTTGA

Coding sequence (CDS)

ATGGCAAGGTTTTGGTGGAGTGGGGTGGAGGAAGATCGGAGGATCCATTGGGTTTTGAGGGGGCGGTATTATCCGTCTTCAGATTTTTTGGAGGCTACAGTGGGTTCCCGAGCATCCTTTATCTGGAGGAGTCTAATGTGGGGGAAGGTACTTTTGGAGAAGGGTCTCAGATGGAGAATAGAGAGCGGTGAGAGGATGCATGTTTACAGATCCAATTGGATTCCTTGCGATGCCAGTCGAAGGATTTTATCCGCGGTCACGTTGCCACCAGATTCCCGAGTGGCTGATTTGCTAACGGCATCCAGGCAATGGAATGAGGGTCTGCTAAAGCAACACTTCAGCCCCCATGAGTTTGTGCTCGGTCAAAAGCGGGTATCGGCTAGGCCAATCGGGTGTCGTAGCTCGAAATCTGTCCTTATCGTCCCTTGA

Protein sequence

MARFWWSGVEEDRRIHWVLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNEGLLKQHFSPHEFVLGQKRVSARPIGCRSSKSVLIVP
Homology
BLAST of Lag0019081 vs. NCBI nr
Match: XP_022149385.1 (uncharacterized protein LOC111017816 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 5.1e-24
Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = 0

Query: 1   MARFWWSGVEEDRRIHW--------------VLRGRYYPSSDFLEATVGSRASFIWRSLM 60
           MARFWW    ED RIHW               L+GRY+ +  FL+A VGS  S+IWRSL+
Sbjct: 366 MARFWWGEFNEDNRIHWGWRIMRDSSSLLALALKGRYFKNKTFLDADVGSNPSYIWRSLL 425

Query: 61  WGKVLLEKGLRWRIESGERMHVYRSNWIPCDASRRILSAVTLPPDSRVADLLTASRQWNE 118
            G+ +L+ GLRWR+  G  + +Y SNWIP D +  + S   LP  S V+ L++AS  WNE
Sbjct: 426 RGRSILQSGLRWRVGDGLNVPIYGSNWIPRDGNLHVHSPPRLPLSSIVSTLISASGGWNE 485

BLAST of Lag0019081 vs. NCBI nr
Match: ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-23
Identity = 64/162 (39.51%), Postives = 77/162 (47.53%), Query Frame = 0

Query: 1   MARFWWSGVEEDRRIHWV------------------------------------------ 60
           MARFWW+  ++ R IHWV                                          
Sbjct: 488 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 547

Query: 61  ---LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIP 118
               R RY+PS  FLEA VG+  SFIWRSL WGK LL KGLRWR+ SG  + VY   W+P
Sbjct: 548 ARIFRARYHPSVPFLEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLP 607

BLAST of Lag0019081 vs. NCBI nr
Match: CAB4262994.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 117.5 bits (293), Expect = 9.6e-23
Identity = 63/162 (38.89%), Postives = 80/162 (49.38%), Query Frame = 0

Query: 1    MARFWWSGVEEDRRIHWV------------------------------------------ 60
            MA+FWW+ V++ R I WV                                          
Sbjct: 1215 MAQFWWARVKDKRGIDWVKWEMLCKSKFAGGLGFRDLEAFNQALLTKQCQCIIQTPESLV 1274

Query: 61   ---LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIP 118
                R RY+PS+ FLEA VG+  SFIWRSL WGK LL KGLRWR+ +GE + VY + W+P
Sbjct: 1275 ARIFRARYHPSAPFLEAGVGTNPSFIWRSLQWGKELLNKGLRWRVGNGESIQVYTNKWLP 1334

BLAST of Lag0019081 vs. NCBI nr
Match: XP_022159057.1 (uncharacterized protein LOC111025497 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 61/159 (38.36%), Postives = 78/159 (49.06%), Query Frame = 0

Query: 1   MARFWWSGVEEDRRIH-------------------------------------------- 60
           MARFWW   + D +IH                                            
Sbjct: 271 MARFWWGDGDADHKIHWVSWKRMCLRKCMGGLGFRDLEFFNQALLAKQGWQIFSDPSSLL 330

Query: 61  -WVLRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIP 115
            WVL+ +Y+ + DF+EA+VGSRASFIWRSL+WG  LL  GLRWR+ +G  + +Y  NWIP
Sbjct: 331 AWVLKFKYFKNCDFIEASVGSRASFIWRSLLWGCDLLRIGLRWRVGNGANIRIYEDNWIP 390

BLAST of Lag0019081 vs. NCBI nr
Match: ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-22
Identity = 62/162 (38.27%), Postives = 76/162 (46.91%), Query Frame = 0

Query: 1   MARFWWSGVEEDRRIHWV------------------------------------------ 60
           MARFWW+  ++ R IHWV                                          
Sbjct: 775 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 834

Query: 61  ---LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWIP 118
               R RY+PS  FLEA VG+  SFIW SL WGK LL KG+RWR+ SG  + VY   W+P
Sbjct: 835 ARIFRARYHPSVPFLEAEVGTNPSFIWGSLQWGKELLNKGVRWRVGSGVSIQVYTDKWLP 894

BLAST of Lag0019081 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-08
Identity = 34/120 (28.33%), Postives = 45/120 (37.50%), Query Frame = 0

Query: 1   MARFWWSGVEEDRRIHWV------------------------------------------ 60
           M  FWWS  E  R+I WV                                          
Sbjct: 25  MTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTL 84

Query: 61  ----LRGRYYPSSDFLEATVGSRASFIWRSLMWGKVLLEKGLRWRIESGERMHVYRSNWI 75
               LR RY+P S  +E +VG+R S+ WRS++ G+ LL +GL   I  G    V+   WI
Sbjct: 85  LSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149385.15.1e-2443.51uncharacterized protein LOC111017816 [Momordica charantia][more]
ONI01138.11.9e-2339.51hypothetical protein PRUPE_6G123900 [Prunus persica][more]
CAB4262994.19.6e-2338.89unnamed protein product [Prunus armeniaca][more]
XP_022159057.11.3e-2238.36uncharacterized protein LOC111025497 [Momordica charantia][more]
ONI09819.12.8e-2238.27hypothetical protein PRUPE_4G011200 [Prunus persica][more]
Match NameE-valueIdentityDescription
P932956.9e-0828.33Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019081.1Lag0019081.1mRNA