Lag0019080 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019080
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr5: 38386818 .. 38387351 (-)
RNA-Seq ExpressionLag0019080
SyntenyLag0019080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGTAGCTAGGTTTGGATCTGTGTTGTCGAACTGTAAGACAGTAGAGATTGAGAGCCTCCTTCGAGATGTTAAGGATGAATTGGAGTGGGAAAGACATGAGGAGTGGGTGGTCTTGTCATGGGCAATCTGGAGTAGACGAAATTGGTTGCGGCAGAAGGAGGAGGTGATGGGTTTGTGTTTGGTGGAGTGGGTAGAGGGGTACTTAAAAGCCTACAGGGAAGCCAACTGCTGGAGGAAGGAGACGGTGGAGGAGGTGCCAAGGCAGGTTATATGTAGGTGGAGGCCACCGCAGGAGAGATGGTTTAAGATTAATGTGGATGTTGTTTTTCAGTCAGACCAGATGGTAGCTGGTTCGGGGATAGTGATCCGGGAGTCGAGAGGATTGGTGATGGTGTCTGCGGGTTTTCCTCATTTACATGTTAGGGATGTTGATATGGTCGAGGGATTAGCAGCAGTGGATGGATTGAGGTTAGCAGCTGAAGTGAGTGTTGGCCCGTGTGTACTGGAGACAGACTCAATAAGGGTTTGA

mRNA sequence

ATGTGGGTAGCTAGGTTTGGATCTGTGTTGTCGAACTGTAAGACAGTAGAGATTGAGAGCCTCCTTCGAGATGTTAAGGATGAATTGGAGTGGGAAAGACATGAGGAGTGGGTGGTCTTGTCATGGGCAATCTGGAGTAGACGAAATTGGTTGCGGCAGAAGGAGGAGGTGATGGGTTTGTGTTTGGTGGAGTGGGTAGAGGGGTACTTAAAAGCCTACAGGGAAGCCAACTGCTGGAGGAAGGAGACGGTGGAGGAGGTGCCAAGGCAGGTTATATGTAGGTGGAGGCCACCGCAGGAGAGATGGTTTAAGATTAATGTGGATGTTGTTTTTCAGTCAGACCAGATGGTAGCTGGTTCGGGGATAGTGATCCGGGAGTCGAGAGGATTGGTGATGGTGTCTGCGGGTTTTCCTCATTTACATGTTAGGGATGTTGATATGGTCGAGGGATTAGCAGCAGTGGATGGATTGAGGTTAGCAGCTGAAGTGAGTGTTGGCCCGTGTGTACTGGAGACAGACTCAATAAGGGTTTGA

Coding sequence (CDS)

ATGTGGGTAGCTAGGTTTGGATCTGTGTTGTCGAACTGTAAGACAGTAGAGATTGAGAGCCTCCTTCGAGATGTTAAGGATGAATTGGAGTGGGAAAGACATGAGGAGTGGGTGGTCTTGTCATGGGCAATCTGGAGTAGACGAAATTGGTTGCGGCAGAAGGAGGAGGTGATGGGTTTGTGTTTGGTGGAGTGGGTAGAGGGGTACTTAAAAGCCTACAGGGAAGCCAACTGCTGGAGGAAGGAGACGGTGGAGGAGGTGCCAAGGCAGGTTATATGTAGGTGGAGGCCACCGCAGGAGAGATGGTTTAAGATTAATGTGGATGTTGTTTTTCAGTCAGACCAGATGGTAGCTGGTTCGGGGATAGTGATCCGGGAGTCGAGAGGATTGGTGATGGTGTCTGCGGGTTTTCCTCATTTACATGTTAGGGATGTTGATATGGTCGAGGGATTAGCAGCAGTGGATGGATTGAGGTTAGCAGCTGAAGTGAGTGTTGGCCCGTGTGTACTGGAGACAGACTCAATAAGGGTTTGA

Protein sequence

MWVARFGSVLSNCKTVEIESLLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQKEEVMGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV
Homology
BLAST of Lag0019080 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-18
Identity = 64/171 (37.43%), Postives = 90/171 (52.63%), Query Frame = 0

Query: 20  SLLRDVKDELEWERHEEWVVLSWAIWSRRN-WLRQKEEVMGLCLVEWVEGYLKAYREANC 79
           ++LRD +D L W+  EE VV  W++W+RRN ++  K  V    L  WV  Y+  ++  N 
Sbjct: 3   NILRDWRDMLNWKDFEELVVFLWSLWNRRNAFVFNKRRVEDDDLAGWVSTYIATFKATNT 62

Query: 80  WRKETVEEVPR-----------QVICRWRPPQERWFKINVDVVFQSDQMVAGSG-IVIRE 139
                 ++V +           Q    W P +E  FK+  D  F S    AG G I+IR+
Sbjct: 63  NHATANQDVSQSFQQSSQIHQAQNHTIWCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRD 122

Query: 140 SRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV 178
            RG V+ SA     HV  VD  E LAAV+GLR+A E  + P +LETDS+R+
Sbjct: 123 HRGQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRI 173

BLAST of Lag0019080 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 9.8e-17
Identity = 57/153 (37.25%), Postives = 78/153 (50.98%), Query Frame = 0

Query: 27  DELEWERHEEWVVLSWAIWSRRNWLRQKEEVMGLC--LVEWVEGYLKAYREANCWRKETV 86
           D + W+     VVL WAIW+ RN   Q   + G    LV W E YL+ Y+ A       +
Sbjct: 34  DLVSWQHIGAIVVLLWAIWNARNQTPQHFSLGGSLSDLVSWSENYLQVYQAAQRSSXSAL 93

Query: 87  EEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSGIVIRESRGLVMVSAGFPHLHVRD 146
                  +  WRPP     K+NVD  F+ +  VAG G++IR+S GLV ++A        D
Sbjct: 94  VVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASD 153

Query: 147 VDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV 178
           VD VEG A  +G+ LA E       +ETDS+R+
Sbjct: 154 VDWVEGFAVYEGILLAVEAGFIRFQIETDSLRI 186

BLAST of Lag0019080 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-15
Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 0

Query: 2    WVARFGSVL-SNCKTVEIES--LLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQKEEV- 61
            W+ +F   L  N K  ++    +LR+  + L     EE  V+ W +W++RN     +   
Sbjct: 892  WICKFAEALWINSKFGKLSPFLILRESHESLSKADFEELCVVIWGLWNQRNARAFNDSTK 951

Query: 62   ----MGLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQS 121
                +G+ LVEW   Y   +REA          V       W+PP E  +KIN D  F +
Sbjct: 952  TVFKIGMELVEWANKYAMEFREAK--SNPITGRVTNTAEILWQPPDEGIYKINTDASFLA 1011

Query: 122  DQMVAGSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCV 170
                AG GI+I   RG VM +A     +++ VDM E +AAV+GL+LA+E+ + P +
Sbjct: 1012 SDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVEGLQLASEIGMHPAL 1065

BLAST of Lag0019080 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-15
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = 0

Query: 62  LVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVAGSG 121
           LVEW   Y+  +REAN         V       W PP +R +KIN D  F +    AG G
Sbjct: 3   LVEWANKYVMEFREAN--SNPFPGRVTNTAEVLWLPPDKRIYKINTDASFLASDQHAGLG 62

Query: 122 IVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV 178
           I+IR  RG VM SA     +++ VDM E + AV+GL+LA+++ V P +LETDS R+
Sbjct: 63  IIIRNDRGQVMASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRI 116

BLAST of Lag0019080 vs. NCBI nr
Match: ESR42018.1 (hypothetical protein CICLE_v10013872mg, partial [Citrus clementina])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 0

Query: 3   VARFGSVLSNCKTVEIESLLRDVKDELEWERHEEWVVLSWAIWSRRNWLRQ----KEEVM 62
           + RF S L++   +E  ++   +   L  +  EEWVV   +IW  RN+L      +E   
Sbjct: 67  LTRFSSSLNSTMPMEFSNISIHIASLLTKDVFEEWVVFCCSIWLARNYLTHGNAIRESQD 126

Query: 63  GLCLVEWVEGYLKAYREANCWRKETVEEVPRQVICRWRPPQERWFKINVDVVFQSDQMVA 122
            +   E V   L+A        + +    PRQ    W+   E W+K+N+D + +S    A
Sbjct: 127 AVTQAENVLASLRAGTTQGQVDRSSKTNKPRQT---WQSLPEPWYKVNIDAIVRSKADHA 186

Query: 123 GSGIVIRESRGLVMVSAGFPHLHVRDVDMVEGLAAVDGLRLAAEVSVGPCVLETDSIRV 178
           G G+++R S G VM ++    L + DV+ VE LA   GLRL +++ + P ++++DS+ V
Sbjct: 187 GIGVLVRNSVGDVMTASISQALFLGDVEFVEALALQKGLRLTSDIGLTPAIIKSDSLNV 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139684.14.0e-1837.43uncharacterized protein LOC111010533 [Momordica charantia][more]
XP_022150944.19.8e-1737.25uncharacterized protein LOC111018973 [Momordica charantia][more]
XP_022150918.15.4e-1532.39uncharacterized protein LOC111018954 [Momordica charantia][more]
XP_022140628.19.2e-1542.24uncharacterized protein LOC111011237 [Momordica charantia][more]
ESR42018.11.7e-1330.17hypothetical protein CICLE_v10013872mg, partial [Citrus clementina][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 106..175
e-value: 4.6E-9
score: 36.1
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 77..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019080.1Lag0019080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity