Lag0019072 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019072
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome c oxidase assembly protein CtaG / Cox11 family
Location	chr5: 38281706 .. 38282432 (-)
RNA-Seq Expression	Lag0019072
Synteny	Lag0019072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTTTTGCCCCTCCTCTCATACGTTTTGGTGATGGGTGGCCTCACAGTAGCTTAAAATGTAGGCTTCAAAAACCTAAATTTCTGTGTAACTAGTGGATTTAACGAACCAGTAGCTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTATCTTGTCCTATGATTGATTGAATTATTTTGTCCTGTGATTCCTACCAACTGTGATGTTTCATGTTAAGCTAGCGTCACTGCTTCTTGAGGAATGGCATTGTTCCCGAAACTAAGATTTTATTAGCATTGAGTTTTAGTCCACAAAAAATCAGAAGAGTAGGTCATAAAGCATTGACTCTTAAAATTTTTCTTTCTGAACTTTCATTGAGATAATATTTTAATTTAAAGTGATAAGGTTGCCAGAATTTAGACTTTTGTAAAATCCATCTAAATCATAGAGAATGAGATTTTTTTTTTTGCACTTGAACTTTGTTTCAGGCTGCAATCTACTTCAATAAAATACAATGCTTCTGCTTCGAGGAGCAACGCCTCCTTCCTGGGGAGCAGATTGACATGCCAGTAAGTATATGTTTCTATTTTCGGGTCGAGCTTTTAGGCAAGTCATCTGATCCACGACCTGATTCTGCAGGTGTTCTTTTACATTGATCCTGAGTTTGAAACTGATCCAAAAATGGACGGCATCAACAATTTGATTCTATCCTACACCTTTTTCAAGGTCTCAGAAGAATAG

mRNA sequence

ATGTCTCTTTTGCCCCTCCTCTCATACGTTTTGGTGATGGGTGGCCTCACAGCTGCAATCTACTTCAATAAAATACAATGCTTCTGCTTCGAGGAGCAACGCCTCCTTCCTGGGGAGCAGATTGACATGCCAGTGTTCTTTTACATTGATCCTGAGTTTGAAACTGATCCAAAAATGGACGGCATCAACAATTTGATTCTATCCTACACCTTTTTCAAGGTCTCAGAAGAATAG

Coding sequence (CDS)

ATGTCTCTTTTGCCCCTCCTCTCATACGTTTTGGTGATGGGTGGCCTCACAGCTGCAATCTACTTCAATAAAATACAATGCTTCTGCTTCGAGGAGCAACGCCTCCTTCCTGGGGAGCAGATTGACATGCCAGTGTTCTTTTACATTGATCCTGAGTTTGAAACTGATCCAAAAATGGACGGCATCAACAATTTGATTCTATCCTACACCTTTTTCAAGGTCTCAGAAGAATAG

Protein sequence

MSLLPLLSYVLVMGGLTAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVSEE

Homology

[Close]

BLAST of Lag0019072 vs. NCBI nr
Match: KAG6788112.1 (hypothetical protein POTOM_004166 [Populus tomentosa])

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 11  LVMGGLTAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYT 70
           LV   L AA+YFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDP+MDGINN+ILSYT
Sbjct: 269 LVCNSLQAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNIILSYT 328

Query: 71  FFKVSEE 78
           FFKVSEE
Sbjct: 329 FFKVSEE 335

[Close]

BLAST of Lag0019072 vs. NCBI nr
Match: KAG6600641.1 (Cytochrome c oxidase assembly protein COX11, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 16  LTAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 75
           + AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS
Sbjct: 266 MKAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 325

Query: 76  EE 78
           EE
Sbjct: 326 EE 327

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BLAST of Lag0019072 vs. NCBI nr
Match: XP_020552076.1 (cytochrome c oxidase assembly protein COX11, mitochondrial isoform X2 [Sesamum indicum] >XP_020552077.1 cytochrome c oxidase assembly protein COX11, mitochondrial isoform X2 [Sesamum indicum])

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 16  LTAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 75
           + AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS
Sbjct: 153 MKAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 212

Query: 76  EE 78
           EE
Sbjct: 213 EE 214

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BLAST of Lag0019072 vs. NCBI nr
Match: XP_008453787.1 (PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 [Cucumis melo] >XP_008453788.1 PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 [Cucumis melo] >XP_008453789.1 PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 [Cucumis melo] >XP_008453791.1 PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 [Cucumis melo] >XP_008453792.1 PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 [Cucumis melo] >XP_016901543.1 PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 [Cucumis melo] >XP_016901544.1 PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 16  LTAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 75
           + AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS
Sbjct: 276 MKAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 335

Query: 76  EE 78
           EE
Sbjct: 336 EE 337

[Close]

BLAST of Lag0019072 vs. NCBI nr
Match: XP_022981835.1 (cytochrome c oxidase assembly protein COX11, mitochondrial [Cucurbita maxima] >XP_022981843.1 cytochrome c oxidase assembly protein COX11, mitochondrial [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 16  LTAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 75
           + AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS
Sbjct: 266 MKAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 325

Query: 76  EE 78
           EE
Sbjct: 326 EE 327

[Close]

BLAST of Lag0019072 vs. ExPASy Swiss-Prot
Match: Q8GWR0 (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX11 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.0e-29
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 16  LTAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVS 75
           + A +YFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDP+MDGINNLILSYTFFKVS
Sbjct: 208 MKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVS 267

Query: 76  EE 78
           EE
Sbjct: 268 EE 269

[Close]

BLAST of Lag0019072 vs. ExPASy Swiss-Prot
Match: A3KMZ6 (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Bos taurus OX=9913 GN=COX11 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-18
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 18  AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVSE 77
           A  YFNKIQCFCFEEQRL P E++DMPVFFYIDPEF  DP+M  ++ + LSYTFF+  E
Sbjct: 203 AGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMVNVDLITLSYTFFEAKE 261

[Close]

BLAST of Lag0019072 vs. ExPASy Swiss-Prot
Match: Q6P8I6 (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Mus musculus OX=10090 GN=Cox11 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-18
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 18  AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVSE 77
           A  YFNKIQCFCFEEQRL P E++DMPVFFYIDPEF  DP+M  ++ + LSYTFF+  E
Sbjct: 207 AGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMVNVDLITLSYTFFEAKE 265

[Close]

BLAST of Lag0019072 vs. ExPASy Swiss-Prot
Match: Q9Y6N1 (Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Homo sapiens OX=9606 GN=COX11 PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-18
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 18  AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVSE 77
           A  YFNKIQCFCFEEQRL P E++DMPVFFYIDPEF  DP+M  ++ + LSYTFF+  E
Sbjct: 208 AGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMIKVDLITLSYTFFEAKE 266

[Close]

BLAST of Lag0019072 vs. ExPASy Swiss-Prot
Match: O21243 (Cytochrome c oxidase assembly protein ctaG OS=Reclinomonas americana OX=48483 GN=CTAG PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-18
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 18  AAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPKMDGINNLILSYTFFKVSE 77
           A IYFNKIQCFCFEEQRL P E IDMPVFF+IDP    DPKM  I+++ LSYTFF V +
Sbjct: 123 AGIYFNKIQCFCFEEQRLKPHETIDMPVFFFIDPAILDDPKMSDIDSITLSYTFFNVED 181

The following BLAST results are available for this feature:

BLAST of Lag0019072 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6788112.1	2.7e-27	89.55	hypothetical protein POTOM_004166 [Populus tomentosa]	[more]
KAG6600641.1	4.5e-27	96.77	Cytochrome c oxidase assembly protein COX11, mitochondrial, partial [Cucurbita a...	[more]
XP_020552076.1	4.5e-27	96.77	cytochrome c oxidase assembly protein COX11, mitochondrial isoform X2 [Sesamum i...	[more]
XP_008453787.1	4.5e-27	96.77	PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1...	[more]
XP_022981835.1	4.5e-27	96.77	cytochrome c oxidase assembly protein COX11, mitochondrial [Cucurbita maxima] >X...	[more]

BLAST of Lag0019072 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWR0	5.0e-29	91.94	Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Arabidopsis thalia...	[more]
A3KMZ6	2.3e-18	67.80	Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Bos taurus OX=9913...	[more]
Q6P8I6	2.3e-18	67.80	Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Mus musculus OX=10...	[more]
Q9Y6N1	4.0e-18	67.80	Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Homo sapiens OX=96...	[more]
O21243	4.0e-18	69.49	Cytochrome c oxidase assembly protein ctaG OS=Reclinomonas americana OX=48483 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023471	Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily	GENE3D	2.60.370.10	Ctag/Cox11	coord: 9..77 e-value: 6.4E-29 score: 102.3
IPR023471	Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily	SUPERFAMILY	110111	Ctag/Cox11	coord: 17..76
IPR007533	Cytochrome c oxidase assembly protein CtaG/Cox11	PFAM	PF04442	CtaG_Cox11	coord: 17..73 e-value: 3.3E-26 score: 92.1
None	No IPR available	PANTHER	PTHR21320:SF7	BNAA08G27140D PROTEIN	coord: 15..77
None	No IPR available	PANTHER	PTHR21320	CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED	coord: 15..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019072.1	Lag0019072.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009846	pollen germination
biological_process	GO:1904960	positive regulation of cytochrome-c oxidase activity
biological_process	GO:0010101	post-embryonic root morphogenesis
cellular_component	GO:0032592	integral component of mitochondrial membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0043621	protein self-association