Lag0019067 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0019067
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein UPSTREAM OF FLC
Location	chr5: 38244559 .. 38244947 (+)
RNA-Seq Expression	Lag0019067
Synteny	Lag0019067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAAAAGGGATGGGAGAAGAGGAGATGATAAAGTATATGTCGGAGAATCCGAGGTTCGGGAAGTTGCAGACGGAGGAGAAGGAGTATTTCAGTGGCTCCATTGTCGAGTCCATTAGAGAAGGAGAAGATCGACATGTCGTGGAACCGGTGCTCAAGAAATCCACCTCCTATAACCAAGAAAAGTAAGTCCATTTCTTCCCACAAAAAAAAAAAAAAAAAAGTTTAAATTTGAGTAAAAAAATTATACTAAATAACATCTATTCAGGAGCAAGAGAGAAGAGTTAGAAGAACGGAGAGAAGGAGAAGAAGAGAAGGGTGGAATGAAAGCAGCAGGAAGGTGCATTCCTCGAATGATAATATCAAAGCAACCCAAGAAGCCTTGA

mRNA sequence

ATGGCCGGAAAAGGGATGGGAGAAGAGGAGATGATAAAGTATATGTCGGAGAATCCGAGGTTCGGGAAGTTGCAGACGGAGGAGAAGGAGTATTTCAGTGGCTCCATTGTCGAGTCCATTAGAGAAGGAGAAGATCGACATGTCGTGGAACCGGTGCTCAAGAAATCCACCTCCTATAACCAAGAAAAGAGCAAGAGAGAAGAGTTAGAAGAACGGAGAGAAGGAGAAGAAGAGAAGGGTGGAATGAAAGCAGCAGGAAGGTGCATTCCTCGAATGATAATATCAAAGCAACCCAAGAAGCCTTGA

Coding sequence (CDS)

ATGGCCGGAAAAGGGATGGGAGAAGAGGAGATGATAAAGTATATGTCGGAGAATCCGAGGTTCGGGAAGTTGCAGACGGAGGAGAAGGAGTATTTCAGTGGCTCCATTGTCGAGTCCATTAGAGAAGGAGAAGATCGACATGTCGTGGAACCGGTGCTCAAGAAATCCACCTCCTATAACCAAGAAAAGAGCAAGAGAGAAGAGTTAGAAGAACGGAGAGAAGGAGAAGAAGAGAAGGGTGGAATGAAAGCAGCAGGAAGGTGCATTCCTCGAATGATAATATCAAAGCAACCCAAGAAGCCTTGA

Protein sequence

MAGKGMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYNQEKSKREELEERREGEEEKGGMKAAGRCIPRMIISKQPKKP

Homology

[Close]

BLAST of Lag0019067 vs. NCBI nr
Match: XP_038907002.1 (protein UPSTREAM OF FLC [Benincasa hispida])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MAGKGMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYN 60
           MAGK +GEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR  EDRHVV+PVLKKS SYN
Sbjct: 286 MAGKMIGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR--EDRHVVQPVLKKSNSYN 345

Query: 61  QEKSKREELEERREGEEE---KGGMKAAGRCIPRMII----SKQPKKP 102
           +EKSKR E+EE+R+G+EE    GG+K  GRC+P MI+    SKQPKKP
Sbjct: 346 EEKSKRGEMEEKRDGDEENENNGGIK--GRCLPLMILTSASSKQPKKP 389

[Close]

BLAST of Lag0019067 vs. NCBI nr
Match: KAG6600637.1 (Protein UPSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 86/117 (73.50%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MAGKGMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYN 60
           MAGK MGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR  EDRHVVEPVLKKS+SYN
Sbjct: 297 MAGKRMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR--EDRHVVEPVLKKSSSYN 356

Query: 61  QEKSKREELEERRE------GEEEKGGMKAAGRCIPRMI---------ISKQ-PKKP 102
           +EKSKR EL E+R+       EE+ GGMK  GRCIPRMI          SKQ PKKP
Sbjct: 357 EEKSKRGELGEKRDENEETRREEDDGGMK--GRCIPRMISAASALALASSKQPPKKP 409

[Close]

BLAST of Lag0019067 vs. NCBI nr
Match: KAG7031273.1 (Protein UPSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 86/117 (73.50%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MAGKGMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYN 60
           MAGK MGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR  EDRHVVEPVLKKS+SYN
Sbjct: 299 MAGKRMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR--EDRHVVEPVLKKSSSYN 358

Query: 61  QEKSKREELEERRE------GEEEKGGMKAAGRCIPRMI---------ISKQ-PKKP 102
           +EKSKR EL E+R+       EE+ GGMK  GRCIPRMI          SKQ PKKP
Sbjct: 359 EEKSKRGELGEKRDENEETRREEDDGGMK--GRCIPRMISAASALALASSKQPPKKP 411

[Close]

BLAST of Lag0019067 vs. NCBI nr
Match: XP_023525139.1 (protein UPSTREAM OF FLC isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-28
Identity = 85/117 (72.65%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MAGKGMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYN 60
           MAGK +GEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR  EDRHVVEPVLKKS+SYN
Sbjct: 329 MAGKRIGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR--EDRHVVEPVLKKSSSYN 388

Query: 61  QEKSKREELEERRE------GEEEKGGMKAAGRCIPRMI---------ISKQ-PKKP 102
           +EKSKR EL E+R+       EE++GGMK  GRCIPRMI          SKQ PKKP
Sbjct: 389 EEKSKRGELGEKRDENEETRREEDEGGMK--GRCIPRMISAASALALASSKQPPKKP 441

[Close]

BLAST of Lag0019067 vs. NCBI nr
Match: XP_023525148.1 (protein UPSTREAM OF FLC isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-28
Identity = 85/117 (72.65%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MAGKGMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYN 60
           MAGK +GEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR  EDRHVVEPVLKKS+SYN
Sbjct: 305 MAGKRIGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIR--EDRHVVEPVLKKSSSYN 364

Query: 61  QEKSKREELEERRE------GEEEKGGMKAAGRCIPRMI---------ISKQ-PKKP 102
           +EKSKR EL E+R+       EE++GGMK  GRCIPRMI          SKQ PKKP
Sbjct: 365 EEKSKRGELGEKRDENEETRREEDEGGMK--GRCIPRMISAASALALASSKQPPKKP 417

[Close]

BLAST of Lag0019067 vs. ExPASy Swiss-Prot
Match: Q9LX14 (Protein SOSEKI 2 OS=Arabidopsis thaliana OX=3702 GN=SOK2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 8   EEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYNQEKSKRE 67
           E EMI++MSENPRFG  Q EEKEYFSGSIVES+   ++R   EP L++S S+N+E+SK  
Sbjct: 323 EREMIRFMSENPRFGNPQAEEKEYFSGSIVESV--SQERVTAEPSLRRSNSFNEERSKIV 382

Query: 68  ELEERREGEEEKGGMKAAGRCIPR---MIISKQPKK 101
           E+ +  + +EE+   K   +CIPR   M  SKQ KK
Sbjct: 383 EMAKETKKKEERSMAKV--KCIPRTCLMSSSKQIKK 414

[Close]

BLAST of Lag0019067 vs. ExPASy Swiss-Prot
Match: Q8GY65 (Protein SOSEKI 4 OS=Arabidopsis thaliana OX=3702 GN=SOK4 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-05
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 2   AGKGMGEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYNQ 61
           A +G G   + +   E   FG+++ EEKEYFSGS+++   + E    + P LK+S+SYN 
Sbjct: 254 AVRGTGNYRLERAEKELKSFGRVKLEEKEYFSGSLIDESSKKE----LVPALKRSSSYNI 313

Query: 62  EKSKREELEERREGEE 78
           ++S R  L + +EGEE
Sbjct: 314 DRSSRMGLTKEKEGEE 325

[Close]

BLAST of Lag0019067 vs. ExPASy Swiss-Prot
Match: Q9FJF5 (Protein SOSEKI 5 OS=Arabidopsis thaliana OX=3702 GN=SOK5 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-04
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 7   GEEEMIKYMSENPRFGKLQTEEKEYFSGSIVESIREGEDRHVVEPVLKKSTSYNQEKSKR 66
           GEE + K   E   FG++Q E+KEYFSGS++E+ +E      + P LK+S+SYN ++  R
Sbjct: 339 GEERVDK---ELKSFGRVQLEDKEYFSGSLIETKKE------LVPALKRSSSYNADRCSR 398

Query: 67  EELEERREGEEEKGGMKAAGRCIPR 92
                 ++ EE         +CIPR
Sbjct: 399 MGPTTEKDEEE-----AVRAKCIPR 409

The following BLAST results are available for this feature:

BLAST of Lag0019067 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907002.1	2.6e-30	75.93	protein UPSTREAM OF FLC [Benincasa hispida]	[more]
KAG6600637.1	1.9e-28	73.50	Protein UPSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7031273.1	1.9e-28	73.50	Protein UPSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023525139.1	3.2e-28	72.65	protein UPSTREAM OF FLC isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023525148.1	3.2e-28	72.65	protein UPSTREAM OF FLC isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0019067 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX14	1.6e-14	52.08	Protein SOSEKI 2 OS=Arabidopsis thaliana OX=3702 GN=SOK2 PE=1 SV=1	[more]
Q8GY65	3.9e-05	39.47	Protein SOSEKI 4 OS=Arabidopsis thaliana OX=3702 GN=SOK4 PE=1 SV=1	[more]
Q9FJF5	9.6e-04	37.65	Protein SOSEKI 5 OS=Arabidopsis thaliana OX=3702 GN=SOK5 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..84
None	No IPR available	PANTHER	PTHR31083:SF18	PROTEIN UPSTREAM OF FLC	coord: 7..95
IPR010369	Protein SOSEKI	PFAM	PF06136	DUF966	coord: 6..64 e-value: 1.2E-13 score: 51.5
IPR010369	Protein SOSEKI	PANTHER	PTHR31083	UPSTREAM OF FLC PROTEIN (DUF966)	coord: 7..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0019067.1	Lag0019067.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0005886	plasma membrane