Lag0019040 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0019040
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCystatin domain-containing protein
Locationchr5: 37918805 .. 37919348 (+)
RNA-Seq ExpressionLag0019040
SyntenyLag0019040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCAGCAAAGTTCGAAAAATTGGACAAGGATTCCGATGCCTATCTGGAATCTTTTGTTTATAAGGAATTTGAGGATGAGATGACTGATGAAGAGTTTCGACAATATAATGTAGCATTTGGAAAGAGCGAGGTTTTTATTTGAAAATTGATCTATTTTTCTTTCTTGGTATGCAATTTTAACATTAAATCTCATTCAACGCTACAATGACGCAGGGTTTTGATGTTCCATACTTTCCTAATAATGACGTATGTGGTATAATTCAGCCTGTGATGAATATAAAACCATTTAAGAAAGACATTGACCGAGTTGGAGAGTTAGCCATTAAACAGTACAATGAGCAAAATGTACGTAGTGTTGTATTGATATCTATTCTATTTGTTTCTTCTCAAGTTTTATTTGATAGTTGTGAATGGATAAAACGTTATTGTTGTTTGTTTGGGTGTAGGGTACAAGCTTCGAGATTACAGAATATGTAAAGGTGAATTCTGGGGTAGCGGCGGTAAGTATTATTATATTACTTTCAAGGCAAAGCTGA

mRNA sequence

ATGGCTTCATCAGCAAAGTTCGAAAAATTGGACAAGGATTCCGATGCCTATCTGGAATCTTTTGTTTATAAGGAATTTGAGGATGAGATGACTGATGAAGAGTTTCGACAATATAATGTAGCATTTGGAAAGAGCGAGGGTTTTGATGTTCCATACTTTCCTAATAATGACGTATGTGGTATAATTCAGCCTGTGATGAATATAAAACCATTTAAGAAAGACATTGACCGAGTTGGAGAGTTAGCCATTAAACAGTACAATGAGCAAAATGGTACAAGCTTCGAGATTACAGAATATGTAAAGGTGAATTCTGGGGTAGCGGCGGTAAGTATTATTATATTACTTTCAAGGCAAAGCTGA

Coding sequence (CDS)

ATGGCTTCATCAGCAAAGTTCGAAAAATTGGACAAGGATTCCGATGCCTATCTGGAATCTTTTGTTTATAAGGAATTTGAGGATGAGATGACTGATGAAGAGTTTCGACAATATAATGTAGCATTTGGAAAGAGCGAGGGTTTTGATGTTCCATACTTTCCTAATAATGACGTATGTGGTATAATTCAGCCTGTGATGAATATAAAACCATTTAAGAAAGACATTGACCGAGTTGGAGAGTTAGCCATTAAACAGTACAATGAGCAAAATGGTACAAGCTTCGAGATTACAGAATATGTAAAGGTGAATTCTGGGGTAGCGGCGGTAAGTATTATTATATTACTTTCAAGGCAAAGCTGA

Protein sequence

MASSAKFEKLDKDSDAYLESFVYKEFEDEMTDEEFRQYNVAFGKSEGFDVPYFPNNDVCGIIQPVMNIKPFKKDIDRVGELAIKQYNEQNGTSFEITEYVKVNSGVAAVSIIILLSRQS
Homology
[Close]
BLAST of Lag0019040 vs. NCBI nr
Match: XP_028071956.1 (uncharacterized protein LOC114274267 [Camellia sinensis] >XP_028071964.1 uncharacterized protein LOC114274267 [Camellia sinensis] >THG16095.1 hypothetical protein TEA_014817 [Camellia sinensis var. sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 0 

Query: 8   EKLDKDSDAYLESFVYKEFED------EMTDEEFRQYNVAFGKSEGFDVPYFPNNDVCGI 67
           EK D  S     ++   + ED      E TD E+++YN    +S+GFDV  FP +  CG 
Sbjct: 46  EKEDPRSKVVFYNYDNSDVEDDSDGMHEFTDREYQEYNRQITESDGFDVMSFPRSFACGT 105

Query: 68  IQPVMNIKPFKKDIDRVGELAIKQYNEQNGTSFEITEYVKVNSGVAA 109
             P+ N+     D+  + ELA+K+YNE+  T+ E  + VK N+ V A
Sbjct: 106 TTPLYNLNEIADDLKALSELALKEYNEKEHTNLEFVKVVKANAAVCA 152

[Close]
BLAST of Lag0019040 vs. NCBI nr
Match: KAF5932436.1 (hypothetical protein HYC85_028607 [Camellia sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 0 

Query: 3   SSAKFEKLDKDSDAYLESFVYKEFEDEMTDEEFRQYNVAFGKSEGFDVPYFPNNDVCGII 62
           S   F   D DSD   +S    EF    TD+EF++Y+    +S+GFDV YFP +  CG  
Sbjct: 54  SKIVFYNYDDDSDVEDDSDGMHEF----TDKEFQEYDRQLTQSDGFDVMYFPRSFGCGGT 113

Query: 63  QPVMNIKPFKKDIDRVGELAIKQYNEQNGTSFEITEYVKVNSGVAA 109
            PV N+     D+    ELA+KQYN++   + E  + VK N G+ A
Sbjct: 114 APVFNLDEIADDLKTFAELALKQYNDKEFKNLEFVKVVKENRGLCA 155

[Close]
BLAST of Lag0019040 vs. NCBI nr
Match: KAF5932428.1 (hypothetical protein HYC85_028599 [Camellia sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 0 

Query: 8   EKLDKDSDAYLESFVYKEFED------EMTDEEFRQYNVAFGKSEGFDVPYFPNNDVCGI 67
           EK D  S     ++   + ED      E TD E+++YN    +S+GFDV  FP +  CG 
Sbjct: 46  EKEDPRSKVVFYNYDNSDVEDDSDGMHEFTDREYQEYNRQITESDGFDVMSFPRSFACGT 105

Query: 68  IQPVMNIKPFKKDIDRVGELAIKQYNEQNGTSFEITEYVKVNSGVAA 109
             P+ N+     D+  + ELA+K+YNE+  T+ E  + VK N+ V A
Sbjct: 106 TTPLYNLNEIADDLKALSELALKEYNEKEHTNLEFVKVVKANAAVCA 152

[Close]
BLAST of Lag0019040 vs. NCBI nr
Match: XP_028121385.1 (uncharacterized protein LOC114318650 isoform X1 [Camellia sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 0 

Query: 3   SSAKFEKLDKDSDAYLESFVYKEFEDEMTDEEFRQYNVAFGKSEGFDVPYFPNNDVCGII 62
           S   F   D DSD   +S    EF    TD+EF++Y+    +S+GFDV YFP +  CG  
Sbjct: 54  SKIVFYNYDDDSDVEDDSDGMHEF----TDKEFQEYDRQLTQSDGFDVMYFPRSFGCGGT 113

Query: 63  QPVMNIKPFKKDIDRVGELAIKQYNEQNGTSFEITEYVKVNSGVAA 109
            PV N+     D+    ELA+KQYN++   + E  + VK N G+ A
Sbjct: 114 APVFNLDEIADDLKTFAELALKQYNDKEFKNLEFVKVVKENRGLCA 155

[Close]
BLAST of Lag0019040 vs. NCBI nr
Match: THF95555.1 (hypothetical protein TEA_013571 [Camellia sinensis var. sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 0 

Query: 3   SSAKFEKLDKDSDAYLESFVYKEFEDEMTDEEFRQYNVAFGKSEGFDVPYFPNNDVCGII 62
           S   F   D DSD   +S    EF    TD+EF++Y+    +S+GFDV YFP +  CG  
Sbjct: 54  SKIVFYNYDDDSDVEDDSDGMHEF----TDKEFQEYDRQLTQSDGFDVMYFPRSFGCGGT 113

Query: 63  QPVMNIKPFKKDIDRVGELAIKQYNEQNGTSFEITEYVKVNSGVAA 109
            PV N+     D+    ELA+KQYN++   + E  + VK N G+ A
Sbjct: 114 APVFNLDEIADDLKTFAELALKQYNDKEFKNLEFVKVVKENRGLCA 155

The following BLAST results are available for this feature:
BLAST of Lag0019040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_028071956.11.1e-0835.51uncharacterized protein LOC114274267 [Camellia sinensis] >XP_028071964.1 unchara... [more]
KAF5932436.11.1e-0838.68hypothetical protein HYC85_028607 [Camellia sinensis][more]
KAF5932428.11.1e-0835.51hypothetical protein HYC85_028599 [Camellia sinensis][more]
XP_028121385.11.1e-0838.68uncharacterized protein LOC114318650 isoform X1 [Camellia sinensis][more]
THF95555.11.1e-0838.68hypothetical protein TEA_013571 [Camellia sinensis var. sinensis][more]
BLAST of Lag0019040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0019040.1Lag0019040.1mRNA